NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033759

3300033759: Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_B



Overview

Basic Information
IMG/M Taxon OID3300033759 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128997 | Gp0330726 | Ga0314869
Sample NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SR_B
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size169462917
Sequencing Scaffolds28
Novel Protein Genes30
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2
Not Available7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR121
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTropical Peatland Microbial Communities From Different Locations
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)tropical biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationPeru: Loreto
CoordinatesLat. (o)-4.5438Long. (o)-74.6258Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002531Metagenome / Metatranscriptome551Y
F003042Metagenome / Metatranscriptome511Y
F005549Metagenome / Metatranscriptome397Y
F008449Metagenome333N
F009996Metagenome / Metatranscriptome310Y
F012904Metagenome / Metatranscriptome276Y
F013119Metagenome / Metatranscriptome274Y
F014210Metagenome / Metatranscriptome265Y
F014308Metagenome / Metatranscriptome264Y
F020248Metagenome / Metatranscriptome225Y
F020332Metagenome224Y
F023020Metagenome / Metatranscriptome211Y
F025454Metagenome / Metatranscriptome201Y
F026299Metagenome / Metatranscriptome198Y
F031960Metagenome / Metatranscriptome181Y
F033098Metagenome / Metatranscriptome178Y
F034688Metagenome / Metatranscriptome174Y
F048543Metagenome / Metatranscriptome148Y
F057478Metagenome136Y
F057709Metagenome136Y
F059078Metagenome / Metatranscriptome134Y
F063546Metagenome129Y
F063980Metagenome / Metatranscriptome129Y
F065625Metagenome / Metatranscriptome127Y
F075965Metagenome / Metatranscriptome118Y
F084287Metagenome / Metatranscriptome112Y
F084640Metagenome / Metatranscriptome112Y
F101786Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0314869_000086All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1611Open in IMG/M
Ga0314869_001140Not Available965Open in IMG/M
Ga0314869_001838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium875Open in IMG/M
Ga0314869_001880All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12872Open in IMG/M
Ga0314869_002910All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria791Open in IMG/M
Ga0314869_003113Not Available779Open in IMG/M
Ga0314869_003531All Organisms → cellular organisms → Bacteria → Proteobacteria758Open in IMG/M
Ga0314869_004734All Organisms → cellular organisms → Bacteria → Acidobacteria708Open in IMG/M
Ga0314869_004800All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales706Open in IMG/M
Ga0314869_004985All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium700Open in IMG/M
Ga0314869_005008All Organisms → cellular organisms → Bacteria699Open in IMG/M
Ga0314869_005923Not Available674Open in IMG/M
Ga0314869_006121Not Available669Open in IMG/M
Ga0314869_007720All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria634Open in IMG/M
Ga0314869_007872Not Available631Open in IMG/M
Ga0314869_012448Not Available568Open in IMG/M
Ga0314869_012561Not Available567Open in IMG/M
Ga0314869_014006All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
Ga0314869_014218All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium551Open in IMG/M
Ga0314869_014599All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium548Open in IMG/M
Ga0314869_015013All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii544Open in IMG/M
Ga0314869_016194All Organisms → cellular organisms → Bacteria → Acidobacteria535Open in IMG/M
Ga0314869_018228All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii520Open in IMG/M
Ga0314869_018534All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria518Open in IMG/M
Ga0314869_018689All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
Ga0314869_020296All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis507Open in IMG/M
Ga0314869_020523All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium506Open in IMG/M
Ga0314869_021051All Organisms → cellular organisms → Bacteria503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0314869_000086Ga0314869_000086_1_156F014308SIGIQIIMPKTGTSPKSTPAQQANEREAATPPVTRQAPPPPGMGKFVDKTA
Ga0314869_001140Ga0314869_001140_570_887F002531MASSAIASEGTLRIHRSIAGTSAPFRVTYQAYQDGDEPSPAAERAFYHLQDVREFLNVLGIGAQYVREALRELTAGRSAFLTNIALTEKAIKNAGFNSLLAAARG
Ga0314869_001838Ga0314869_001838_1_522F009996QIGRVNKNKVPANAITLQTVIATALAILVFFILGAGGSDPYKVFYALYAGVTIVWCISTALLFLDIFFAKRADPERFERERRAPLGWLYACGAAGFIVNILAVLFIFVGSWYPTGFPKLWVWNMWMTGITVVSVAAAIVIYLISQRTRHGETDVEFIAEGAVAQEIAEDSPPA
Ga0314869_001880Ga0314869_001880_695_862F020332VGSGVHATVAEAVDAFVRFQPEEHQPDPERREAYDDAYRRYREVYFALKPVFAAG
Ga0314869_002601Ga0314869_002601_414_809F084287FNLAAPAFEKDPTFAQSLGAAAEKVSELTPAVKLYNEGEYETAIPILWRIFQADRENQDARSYLLRCYYNQGIAQLQNGLYGKAADSFKEVIAIDPADADATRNQKFAQHYAKGDLDLMGRIYVRHVQQRP
Ga0314869_002910Ga0314869_002910_585_791F084640IGWLWRDVQHLSLAHDVSDGGLAHALAEASTFSGQRFEAPGDAPRGSVVLSAAETPSWPDLRELGTIA
Ga0314869_003113Ga0314869_003113_188_592F048543MANEKQSKSDHAQNYPASILRNFALLALPWVSFQSDMLKILKKGIKDTSHVKPLQKLTLLELHGLMMILDPSRTWRSRVDGDFEKKIEETYNEIFPKILDSSTHFIEAQDTVLEHMHNALMTWKNGNKAKGHSK
Ga0314869_003531Ga0314869_003531_468_737F020248LFVALCAATAAHAFTIENQGGPGGGQGFKDSDSTSTVPDRHVPVSPFNSNNGQTTVKQGNTTLQFGGQRSFSDRYNTDNIFNPYTREGR
Ga0314869_004734Ga0314869_004734_176_706F003042MAAPANSKHSGPDRPTQLARRLSESLLRERLVPRFVDSYVVEHGRYGLQVHAALYRDLLSLIQREALLAISACALDFVTRPSLARGERNFQVLKRKEISAFRQRFLSALARQQQWNAGAALEFQSDLQMYEGILAKSAQERRRRKPFEVANHPFVDRCAFLLDSSFLENARLAASRA
Ga0314869_004800Ga0314869_004800_531_704F057709MSEFALKVALAIFVAKLFDPFAALPALVAGYFCRSWWQVVISAAAVGIIVEMILAALQ
Ga0314869_004985Ga0314869_004985_285_698F033098MAINTKSIRTKMLGLLAFIALVVGGVSVLYDLRAGGGLIRDEIVKRGRYVASNLAFNAKYGVLTEDKPLLTQFLEGAAAPGGVGERSDVVGALIRDGKGAVLAQTGKAIRDLPGALPAALEEREGATTDGESVILFRA
Ga0314869_005008Ga0314869_005008_542_697F031960PPQTLIADPDAPEADSYKNKDYEFYSLKTFITLTRKSHGTVVKFYDTCRVE
Ga0314869_005923Ga0314869_005923_402_674F026299MARMFIVAWQGTPPPDKADWIRILREVLANETGSYRIVFDRAKRGWRFTLDWREGERARDEGLVANSPESVAYNIYASLAGGGKPVDAAWK
Ga0314869_006121Ga0314869_006121_3_668F101786GRLLHSAGDAPAAIAELESLATTLPPGLLRARALYHHMYVLRLSGALERAIDYGEQAAVEASADPLLQAEVYQLLSRLSDNDVGRKLATARKALEAVAGLAFPDPDVLFYVRAAMVEAEFYAGLGIHLHRLDGVEPDSRLPFPPTRGASRGDDLVGRLLTFAGRIDEGLAVLRGFYERAAVASRSTLPATLGWMAEAQLLAGRFAAAAELTREAIDRAEEIG
Ga0314869_007720Ga0314869_007720_16_270F065625MLVAAGSPPKAPASIDIWRAKHPDLHPHGVVLEGLRERYDERVLEWVPYFHRWLRGPSSEALETSLIAAGAFRAIGWRWVGVRR
Ga0314869_007872Ga0314869_007872_46_279F063546MSDWTLGDIKARNMEIVALCEQESCHHLFVFNLDQLIEGVSAGYKLADFPPMACPACGAEPLAIRLSFADTPPDEDG
Ga0314869_008769Ga0314869_008769_1_615F014210LFVRQTGLVCNQCHVTWTPTPDMTFTGVKFRLNGYRTPWVAEKIEAGEEGAMNGRRLLLGVTGYLSYHMRSNLFQQSKAASDPTLPEPDAGPVSSNPFSSLAWDYAGPIAENVGIWTEWYSTNFNPVTTGDASIGNQFGAVRNDEFDVRMAWNPGEGGNIITVFYNNQAQNAPFFGAFGSGAPAGGQGQFIHFGVGGWLRDRVAI
Ga0314869_012448Ga0314869_012448_2_157F057478MQYLRSLVYTILFFATTLLFGFAVLVAAMLPLSLEQRYVIPRNWGRFLTWLA
Ga0314869_012561Ga0314869_012561_290_565F034688IVSSFFVVVVAASLFLGAVMMIGTFHDQDSELRASGRTTRIARALHDGTLCHYVVIDNRTAQALEDRIGRCDENKPKPKPITVPTFRWGGG
Ga0314869_014006Ga0314869_014006_249_413F025454MLEEAGLDRERARKLRRQILEGIILLCQWQLERMEASPAPPPSGGRRARKVTVD
Ga0314869_014218Ga0314869_014218_197_343F063980VFALVLAYVLIMALKLQRLERDVDELAARAPADDVDEEEARRETASVG
Ga0314869_014599Ga0314869_014599_216_548F013119MDIEQGAERRLSRQDLLKWAALAGGAGLVAGRTGVADAMRAFDVAESGRLQVMDWAGYGNDGGQAMFAQYVKQHPNNKPQFTYMTNESDALAKLHAGLKADLFRPYVGWTK
Ga0314869_015013Ga0314869_015013_3_347F008449AYASKFQKFFALLKERGYKVPANITKCWAPQGTHVAGSNHYIGAACDIQTGWNRGPAFVYHMSDIVEQAGLYNGCSFHDCGHVEAVRGTHNKAPNLYAAMEKFKSEQSTANYQP
Ga0314869_016194Ga0314869_016194_1_534F023020VDKDGTNNLPSVARSESATPLQEQLINLRVRHLEIKDGWFLYNDVKKLVAVEGGDFRLEINLSGTAERPFYVGALKWEEIELARRRDVPIPANVSAKFSLSRDGFSVEQAIVNAGRSHIDLRAQAKDLESPLWTYRYRAWLDLLDIRETFRTPEVPLGRIDLRGEGTIDPEGIKGKGV
Ga0314869_018228Ga0314869_018228_28_519F008449ATNTEVAIHTEAGPTAAKAAPFASVRDANGNSTMVTVQTAYGFNITVNPAYASKFQKFFALLKERGYKVPANITKCWAPRGTHVAGSNHYIGAACDIQTGWNRGPEFVYHMSDIVEQAGLYNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTASYQP
Ga0314869_018534Ga0314869_018534_226_333F012904VTREQQRDNLRTAAVLGSIALVFFLGIMLKYFLLK
Ga0314869_018689Ga0314869_018689_1_204F059078VRCRIAGWKVAEVVVQHFPREAGQSIHRPFRMLGTIWKVLRYLFALRAEMHQAERLRRLVEGRRTAS
Ga0314869_020296Ga0314869_020296_365_505F005549MKYLRKYTAIPAVKYSLIAIASLLWFVGFADQLPDVTQTAKYVGISL
Ga0314869_020523Ga0314869_020523_160_327F014308MSDCSIGIQVIMPKTGTSPKSTPAQQANEREAATPPVTRQAPPPPGMGKFVDKTA
Ga0314869_021051Ga0314869_021051_230_502F075965FLAQYCAGKNISAALCRDVKWWALGLAALLAVVVVWWILGKIAMAFDNRRSRRLHAKIADPETMKEHVWAGHDAHLPSSDQRARRDQRPR
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