NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033169

3300033169: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_18_07-R1



Overview

Basic Information
IMG/M Taxon OID3300033169 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356203 | Ga0334887
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_18_07-R1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size526856496
Sequencing Scaffolds21
Novel Protein Genes22
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
Not Available5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum finnmarkense1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA0941

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013948Metagenome / Metatranscriptome267Y
F015885Metagenome / Metatranscriptome251Y
F039153Metagenome / Metatranscriptome164Y
F043672Metagenome / Metatranscriptome156Y
F048873Metagenome147Y
F056356Metagenome137Y
F066219Metagenome / Metatranscriptome127Y
F070092Metagenome123N
F075591Metagenome / Metatranscriptome118Y
F079824Metagenome / Metatranscriptome115N
F080090Metagenome / Metatranscriptome115Y
F084812Metagenome / Metatranscriptome112Y
F088355Metagenome / Metatranscriptome109Y
F089495Metagenome / Metatranscriptome109N
F089688Metagenome108N
F093892Metagenome106Y
F103499Metagenome / Metatranscriptome101Y
F104571Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334887_1000984All Organisms → cellular organisms → Bacteria40224Open in IMG/M
Ga0334887_1002020All Organisms → cellular organisms → Bacteria24078Open in IMG/M
Ga0334887_1003155Not Available16878Open in IMG/M
Ga0334887_1004038Not Available13749Open in IMG/M
Ga0334887_1004282All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii13116Open in IMG/M
Ga0334887_1008067All Organisms → cellular organisms → Bacteria7610Open in IMG/M
Ga0334887_1009537All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia6565Open in IMG/M
Ga0334887_1018395All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3658Open in IMG/M
Ga0334887_1022800All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales3008Open in IMG/M
Ga0334887_1027534All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia2558Open in IMG/M
Ga0334887_1030349All Organisms → Viruses → Predicted Viral2357Open in IMG/M
Ga0334887_1033308All Organisms → Viruses → Predicted Viral2178Open in IMG/M
Ga0334887_1033951All Organisms → Viruses → Predicted Viral2144Open in IMG/M
Ga0334887_1045098Not Available1698Open in IMG/M
Ga0334887_1053252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1484Open in IMG/M
Ga0334887_1055264Not Available1440Open in IMG/M
Ga0334887_1094977All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga933Open in IMG/M
Ga0334887_1096047Not Available925Open in IMG/M
Ga0334887_1104816All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum finnmarkense863Open in IMG/M
Ga0334887_1136243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium699Open in IMG/M
Ga0334887_1181186All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094554Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334887_1000984Ga0334887_100098412F039153MLYSVTTPEREQKYHTEVKFFNNSKQASLLNFSPLHKEIKKWAKSQGYIPKLYLRSAAVECINPCVLKEPECLMMDLIQVIANGQAYLIAVNIFGPSYDNNLHYILEEHAKERKAIYMKAECLDDVICEIQDNEHNHKGLPCVPDIKSRRSFQGDYSILFSPENLTWKTARYERA
Ga0334887_1002020Ga0334887_100202012F075591MQDMAKLNGLAEAEIDGLMADGIIPTPAEIVELNALAWAVESPESRRLLSRGIPIECGCAYLWPLTLYGQEWFDRVGCRLSNPTAALAYAMAKQYDDGEPLALDGRAAEKAVKAFGRALRCTVAQLNVAISQVLQQEEEADTPPSQSGGMSIGDFSAFLASVAGSTPEFWERRCSAGYTHAVLDAVTRQNTAEGRASSSDPRIRAERALGWAVEKIRQSRKAE
Ga0334887_1003155Ga0334887_100315517F015885MTIGCNQIVDCILKNCDNMVQGIKDTVYFINHEHVDKDNCTFDPENPLLLTQLVLKTVSPPAYAYCISGYNQSNEHSVAMVKRRYQKVWDHNLIFRVFDNTPEVKAWVNDVANSRFLVIIENNYNKAGLGRTVYEVLGWDMGLELNAAERNPNDEEMMGAWLLTAGCSDSLKESLPPLTLFVTSIELTRAAVGSLLAPCCPDELTPEPT
Ga0334887_1004038Ga0334887_10040388F043672MVSMKEPEQLTAGVTMIGTSSWGSQTAGIGSIMGSTWSEKIVFDAQPDRVLSKYFLEFTDLVGNNDVTLIIPKIGDIDLMGGRTGSKEGVARVMTKFDTADNITVSLTSADVKLGGCSVSFETASATRVSIVEMAHKQLVRQYLETLETNANACLEGATIGTSNAGSVFGGSTADNSAITSNLAAGDVITVDKIVDMKIILMQKDFGKRPGDSVLILHPIQFKQLLKSSQFTNAAEFGAPEVVRKGVIEEYVGIKIETSTLVTSATQTVAVHYCYMIDPSAAAAIVWKEKAKVKVETKDDERMYNIYLDAWYKMSIINDNAIVIGVFSDA
Ga0334887_1004282Ga0334887_10042821F080090LLEKWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISIS
Ga0334887_1008067Ga0334887_10080676F084812MKKKNTEISLDNHGKGLLIGIISRALSEDKSLAPDDIDKLKEIKKQLQEV
Ga0334887_1009537Ga0334887_10095376F039153MKYTVITPAATKQYNTTVLFLNNSHGARRLNFSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDLPKESELLVVDLIQIIANGQAYLIAIDTLGSSENHLHFILEEHAKERKAIYVTAECLDDVICEIQDNEHNHKGVPCVPDIKSRRSLQGDYSILFSPENLTWKTARYERA
Ga0334887_1018395Ga0334887_10183954F093892MIFLFKYKANQPAEPVKIKTSPFRNLDRTCNLVEEVFKREKSKEKKTYFCRTRGRIDGSI
Ga0334887_1022800Ga0334887_10228006F056356LIILILILFAGCGRDLKQAKRYFEMKSECDSLIAQANLVINAQKVMIDSLRKIRDDFLKAKAQKYKLPEIDRKITNSAEIKSNIENVRKHLIAIKDFAENGEKATKRLIYYKRKYVTYATVIQVHNENIMIQEITNGLSAKQYISKYLPKEKK
Ga0334887_1027534Ga0334887_10275343F039153MLYSVITPEREKKYHTEVKFFNNSKQASRLNFSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDRPKESELLVVDLIQIIANGQAYLVAIDTLGPSENHLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEHNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARYERCKQEQ
Ga0334887_1030349Ga0334887_10303494F104571MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETKEYNLFRKDNGAWVTGAKAYANTGNYQLTIKPIIGNESGKVLLFLQTSLPKIIHGENYQALNNDETMQAIDVIADDLNNRGVGVNLQECKTSRIDLFRMASANNPFSSYAPVFRLLNAKRSHTTDYGTTFTWANTQRELCVYDKATEMRNRGVKASALPTNAIRFEYRLKTSKVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYSKRYGGAFVNRFFRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKLFDEYRMNFEMARGGLGDSTLKDFYLELKDKILPDNRTITGV
Ga0334887_1033308Ga0334887_10333081F070092MAINDRLKPVMELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKKLKSQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKG
Ga0334887_1033951Ga0334887_10339511F089495MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGSGMTALVSTNDGSAYLKKSIDGTTISANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITAL
Ga0334887_1045098Ga0334887_10450981F066219MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSFVIELE
Ga0334887_1053252Ga0334887_10532521F088355MKNIKNKLSVFAGQKGQLVLAILTITLFVLAAGAPNATIGIGR
Ga0334887_1055264Ga0334887_10552642F089688MAINLDLKQYINTYGLHSIKVIATGEGFRNSEPVVKEYNNSPFIIYTDDGIVVTNVQAGVSSIDLYVDEILEKTIEHDAESTEDVLIDFSNTSVIEGSINHFIIVAHTNYGDFTSNNAMTTRVFGVSGMYDSSVALTRTDDSVGKTYTIDSTTGLVTSDFDDEFPFNAMNEVTVGDSLFISIPEMWWRIGKDAEDNITDIAVA
Ga0334887_1094977Ga0334887_10949772F070092MAINDRLKPVMELLETSKQKIDLIISHGMASDLAIEKRKKELYDEVMTAKENAFKEELADLEGEIRKIKDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334887_1096047Ga0334887_10960472F093892MIFLFKYKANQPAEPVKIKTSPFRNLDETCSLVEEVFKREKSKEKKTYFCRTRGRIDGSI
Ga0334887_1104816Ga0334887_11048162F013948MREKLKKIVAYIFRSWEDEPGYTHPRLKILPPFLLELLAYLIGLAILYQIGAYLYGLI
Ga0334887_1117531Ga0334887_11175313F103499ETCGTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE
Ga0334887_1136243Ga0334887_11362432F079824MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRRVISNYKTVFSEYIPIEEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSPCSVDRCEKVHIIYLYMHDPYQYEPITHIRA
Ga0334887_1181186Ga0334887_11811861F048873MVQNDRQQCSTCPAFSVLAGEGGAGTCRANPPVPLQDDKYFRGSSRDLWFGSYQVVGAFPLVHENDFCMAHPGNRGLL
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