NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300032917

3300032917: Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_15MAY2017_LR1 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300032917 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128851 | Gp0330575 | Ga0314721
Sample NameMetatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_15MAY2017_LR1 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size50219000
Sequencing Scaffolds23
Novel Protein Genes28
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae4
Not Available9
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Dichantheliinae → Dichanthelium → Dichanthelium oligosanthes1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Miscanthus → Miscanthus lutarioriparius1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePhyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Michigan
CoordinatesLat. (o)42.3956Long. (o)-85.372Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000412Metagenome / Metatranscriptome1169Y
F000459Metagenome / Metatranscriptome1109Y
F001543Metagenome / Metatranscriptome673Y
F012546Metagenome / Metatranscriptome279Y
F014095Metagenome / Metatranscriptome265Y
F016911Metagenome / Metatranscriptome243Y
F018668Metagenome / Metatranscriptome233Y
F019078Metagenome / Metatranscriptome231Y
F020484Metagenome / Metatranscriptome223Y
F025200Metagenome / Metatranscriptome202Y
F028072Metagenome / Metatranscriptome192N
F032552Metagenome / Metatranscriptome179Y
F034039Metagenome / Metatranscriptome175Y
F034784Metagenome / Metatranscriptome173Y
F042140Metagenome / Metatranscriptome158Y
F042712Metagenome / Metatranscriptome157Y
F060515Metagenome / Metatranscriptome132Y
F061504Metagenome / Metatranscriptome131N
F063291Metagenome / Metatranscriptome129Y
F065372Metagenome / Metatranscriptome127Y
F076725Metagenome / Metatranscriptome117Y
F086518Metagenome / Metatranscriptome110Y
F089752Metagenome / Metatranscriptome108N
F093512Metagenome / Metatranscriptome106N
F094644Metagenome / Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0314721_101859All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae1835Open in IMG/M
Ga0314721_104930Not Available1342Open in IMG/M
Ga0314721_112318All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae913Open in IMG/M
Ga0314721_115226Not Available821Open in IMG/M
Ga0314721_115351Not Available817Open in IMG/M
Ga0314721_116460All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae788Open in IMG/M
Ga0314721_116696All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii782Open in IMG/M
Ga0314721_118182Not Available748Open in IMG/M
Ga0314721_121396All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum687Open in IMG/M
Ga0314721_122486All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae668Open in IMG/M
Ga0314721_124000All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae644Open in IMG/M
Ga0314721_125045All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Dichantheliinae → Dichanthelium → Dichanthelium oligosanthes628Open in IMG/M
Ga0314721_125461All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays622Open in IMG/M
Ga0314721_129217Not Available574Open in IMG/M
Ga0314721_129531All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum571Open in IMG/M
Ga0314721_129913Not Available566Open in IMG/M
Ga0314721_131216All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Miscanthus → Miscanthus lutarioriparius552Open in IMG/M
Ga0314721_131756All Organisms → cellular organisms → Eukaryota → Opisthokonta547Open in IMG/M
Ga0314721_132063All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays543Open in IMG/M
Ga0314721_133677Not Available528Open in IMG/M
Ga0314721_133887Not Available526Open in IMG/M
Ga0314721_133894Not Available526Open in IMG/M
Ga0314721_136008All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0314721_101859Ga0314721_1018592F032552CYHMIMGLIISCSKIGQKPAKTKYLQNICANAKTTNNWTEVRMVSDFDIKFMPLSKLNRG
Ga0314721_104930Ga0314721_1049301F012546MGPSLALSCNIRSFVIELDYGYRYLLEVYSELSSICFLSWLRYYSMLALHDHPVLEMVNLFFLELYQLL
Ga0314721_112318Ga0314721_1123181F061504MENPSLNLSLLCLAPKYLDLILWALSFGLHWRVDVHKHASNHHGLRSFVRALAFVFLCVI
Ga0314721_114572Ga0314721_1145721F094644MKFIFLSXALRYQRYHSGIWHHCYCCSMPTKCSLHSGYCHTCALRLLCNSNTWILQIXEKDIHLPFASPSSGFQQRMXYCQNHKXLFTHSFIKDLRSMAIYIRMDALECGYHFPSENDQVXQISHFNKSVIVQIHKHRNAKSNIWLNYTSNSLETSEFFGIFXSSLQQATLEKVHISIGNNISLNSYYHMWYVVHYKNSMYLRHDIHILLPCLYMGFNQIEMKHV
Ga0314721_115226Ga0314721_1152262F086518VDRSPELNKVRAIYEPRKPPVEGEAEPPQKRARPAGPMGLGWPAYPLSGSPRSHLSRVDSSHLLEFMSFTIAPLWTSLSWRYLRGKDRIGNPSLNLHLLCLIPKYLDLIFVGSVLWALLEDGCA
Ga0314721_115351Ga0314721_1153511F020484MNLDAARSEIRNRLQRWDKMDITLLFGINLGRIRTRWKEKFVHFAMEQCFSICSVLEIKIKIREDEAAMGQRGIEGGDDDEKQGLGP
Ga0314721_116460Ga0314721_1164601F060515NVKCLSGVDLSDYDFISCTKDGFVSAVIKPMDNRLNHLM
Ga0314721_116696Ga0314721_1166961F063291MSVVAYSLAPPQRSPRAVLVLLFRFIPATQVVLILVFFKKPIGSWELIADMAHLFFSNMLLLRLVFILGPFARIGLFPLLVTAA
Ga0314721_118182Ga0314721_1181821F000412XNXGIFAQTCSTCLERANRKDSSGAHPCRAIDRSXEPRIPSKLSLKDITHATRSKIGSSQSHWNRGTEYYPVAMKTHVEYPNIFFXKYNSPYHFEIGTYVLINLLXAGGSVSPVQPTSLRRNXGFFAETCSTCLEAPNRKDSSGAHPCTAIDRAXEPRIPSLCSLKAITHATGSKIRSSRSRXNRGTEYYTIGMKTHIQYPDIFFXKYNSPYHIEMGTYVLIDLLXAGGSVAPAQPTSLRXNXGIFAQ
Ga0314721_121396Ga0314721_1213962F025200LSPLQVGDDIFGHPNGVVPTPFLLPNLVSNHLAIGLLFDYIGGAIAFVPPVGLGVDERTFDCELLLVLLIRKLLPWLRTLVGLVAFFVAL
Ga0314721_122044Ga0314721_1220441F000459VRSGVLKRVDKVKRGRGRPKLTWDESVKRDFKDWDISEELALDRSAWRLSINVPEP
Ga0314721_122486Ga0314721_1224861F016911FMAIAHYGYLVLKMPSPAGVLTVRGDRTAAVAAVEKLHALAAEAARSEEDTPSTSQARAPARAPKVQPSDPDNVPVKTVQVGADSSRTTRIAGNLEEK
Ga0314721_124000Ga0314721_1240001F042140YVNKKKTNGKVFDHKVGKQERSCNHSIWVPKDVITNKKGPQMVWVPKET
Ga0314721_125045Ga0314721_1250451F014095VCNNNNQFHTLYCKICGILHPLDCFVDPISSGLIGILPDSTAGLLRFKCVLTLVAVSVMVSALKPD
Ga0314721_125461Ga0314721_1254611F065372VHPTARHSAADCREIQKLAKRVSGRRDQSSKDSSPPPRQRPGKEKASDSGAADGEKELGYQSPARELKGVYHDD
Ga0314721_125542Ga0314721_1255421F000459PVRNGVLERVDNVKRGRGRPKLTWDDSVKRDFKDWNISKEIALDRSVWRLAINVPEP
Ga0314721_129217Ga0314721_1292172F034039GTCFTRLMVYMYLLFRGTVLDREVQCLKVLGLNLRDPAVVVPDGVQVVANTTLDSVVVFHLTALADHVSPLVVIAFLKWDLACLVFFLTLFQGI
Ga0314721_129531Ga0314721_1295311F001543VVFIKTGTKHASKGGIELDVFKAFREVLIEVLSFGLGVAELVLVCLIAILLVDGLSFVHSVIYDVYKQAHNQEKEIKALSLSSIRK
Ga0314721_129913Ga0314721_1299131F089752MGFGQRVISAISPLTCLVKVVHLLGVPERGPGRCDNTSVGVVCPWGEYFEARASLFVCLKDKTCLRAEGGQGDDGACCSAAGAFVVLSRASGHRPWLPWLLCGAPFEGGRPEPMLYRLVSKGSAPLCFVWSCLGAVTEEILYSWSTAS
Ga0314721_130924Ga0314721_1309241F034784MQAHLQAMGLNVWRVVSEGVKNNNQQGKQNDVTTKCIILSSLSDIVFNRVYSCENAKKLWQTIIENHEGMEDVANEIYHV
Ga0314721_131216Ga0314721_1312161F028072ENINIRCRINSSEEHTWHTSHGQTNLIVDLIHNFYITWGKRQDDLELKFEKLQKEHKHLEEQYLVANKKLELALQAFEESKIFLGKISQNSDYIKRDISYLFNKLESTNIAEHSKEIVLSSSGILEVTRSLNSDKWKYLIASLEDTSVSK
Ga0314721_131626Ga0314721_1316261F000459VRSGVLKRVDKVKRGRGRPKLTWDESVKRDLKDWDISEEVVLDRSAWRLAINVSEP
Ga0314721_131756Ga0314721_1317561F018668SLHFNTTITFASSTLFTKPTQSTKMAFFKTLLIASVAAVAFASPQGASDGNTKVTGKTMASDAVCGNGQKLACCNSGEDLIGANCLSIPILAIPIQQSCGSNVAACCQTGDAKGNLINLELNCLSIPL
Ga0314721_132063Ga0314721_1320631F042712MEYFLDESGCQKFLQLLADRPALELVEASQALLHRLGVGSDIKGVLGDLPRHARHVRGAPREDVCVGAEKVDEHHFLFAVEGGADLERLVVGAIRVEGHLLDTLGGF
Ga0314721_133677Ga0314721_1336771F093512MSKDDWKAVYTKDDDLKLTKAGGNKIIRIMTPPIFSSGMLDILLVE
Ga0314721_133887Ga0314721_1338871F076725EFSLFSNPRGTSTLVAATKICIELLDYRTGPDPLAAGEGSGPLGTYSGERVLVSWGGSEPSVAA
Ga0314721_133894Ga0314721_1338941F000412ITLATGSKIGSSQSRWNWGTEYYPVGMKTHIEYPNILFXKYNSPYHIEMGTYVLIDLLXAGGSVAPAQPTSLRXNXGIFSQTCSTCLEESYRKDSSGAHPCRAIDRAXEPRIPSPCSLKAISHGTGSKIGSSRSLWKWGTEYYCVGMKTHIEYPDIFFXKYNSPYHIEMGTYILI
Ga0314721_136008Ga0314721_1360081F019078LCFLFAPAQMSTEQKDLGDSAVGDGEKACPCCHFYGVPCRQVRATEDETTTRRNQSLFSGIKRKRSHQEQLTENSIFLDNPSVDELQTIQKRKDPECSRDTQVKNQALYDYVDGLTITMNVIQPHGHKESKEQATEIMQDVMLSSHGGQPSSAIHHHHMCYQCGQKGH
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