NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031484

3300031484: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R1 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300031484 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132857 | Gp0330684 | Ga0314822
Sample NameMetatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R1 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size23322151
Sequencing Scaffolds18
Novel Protein Genes21
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium2
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia1
All Organisms → cellular organisms → Bacteria → Acidobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → land → biofilm material
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Pennsylvania
CoordinatesLat. (o)40.7997Long. (o)-77.8629Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000203Metagenome / Metatranscriptome1619Y
F000344Metagenome / Metatranscriptome1257Y
F001633Metagenome / Metatranscriptome660Y
F001679Metagenome / Metatranscriptome653Y
F002242Metagenome / Metatranscriptome578Y
F005048Metagenome / Metatranscriptome413Y
F008500Metagenome / Metatranscriptome332Y
F011252Metagenome / Metatranscriptome293Y
F013934Metagenome / Metatranscriptome267Y
F015442Metagenome / Metatranscriptome254Y
F016001Metagenome / Metatranscriptome250Y
F026607Metagenome / Metatranscriptome197Y
F030619Metagenome / Metatranscriptome184Y
F030637Metagenome / Metatranscriptome184Y
F048822Metagenome / Metatranscriptome147Y
F053640Metagenome / Metatranscriptome141Y
F059087Metagenome / Metatranscriptome134Y
F099956Metagenome / Metatranscriptome103Y
F105419Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0314822_100504All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus2151Open in IMG/M
Ga0314822_100692All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1873Open in IMG/M
Ga0314822_102643All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1041Open in IMG/M
Ga0314822_103630Not Available899Open in IMG/M
Ga0314822_104510All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei816Open in IMG/M
Ga0314822_104619All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei807Open in IMG/M
Ga0314822_104799All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii793Open in IMG/M
Ga0314822_105561Not Available746Open in IMG/M
Ga0314822_105591All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia745Open in IMG/M
Ga0314822_106752Not Available686Open in IMG/M
Ga0314822_106968Not Available677Open in IMG/M
Ga0314822_108621Not Available616Open in IMG/M
Ga0314822_110869All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium558Open in IMG/M
Ga0314822_110956Not Available556Open in IMG/M
Ga0314822_111150All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
Ga0314822_111749Not Available540Open in IMG/M
Ga0314822_112401Not Available527Open in IMG/M
Ga0314822_113475Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0314822_100504Ga0314822_1005041F030619NTYKRLTLLVKSLPTEQSNTPPRKGVRAHRHRGGDSSPLQQVWTACWSGFVLSGWDSLRVAWFLHSWVVSSVPARGAGWTIGELKKLCHNVRGHALHSKRFKNVPCSIRKDVVDTLCRLAVREPENGFAFSRISRALPEPPVREAVRHLQHAAEMASAAFPTSDAALESLRSFVGVSRFHEHDTKEPRAPRRLPSSSSSCFQWPATRGGIDGYLEHLGHEAEARGATQAEFHQFAGDSLGAFCLRKARVVLRPCQGVAEDLREAYRCAGVLVLREERKLFSMKAEALRAPGYKVRVVGVPDCLTYVEGSWVRESKRLLPYGHWRVDPESREVPGDLQHRHGATFRSLDLSKATDGLSHRAVEVVIEALASRGAIRQCDLPMAKRSLGLGGKATWSFPDPIGEVPFLRGSPMGTPLSFVVLSWVSCWAVARFERSLVHGDDAVGRHRIGSDALDVYADRVSSVGAQLNKGKTFRADHSWTACEVLALPRSWNQERMTLFVAPSIPPPMLKAPVEADPRLENLWLRRMERIMKSRFPWVKCDPRLHLPVEVGGLGYTGRGLAVGRALRSRLGALVSRGPDPVVGAALIGKKPFRETGLFPRPLVRIPRPAAHWRAVKNVDELLAGGEGEESVPLESFETFKCELVESEIRLIEGDKFKRKRVSGRPDRTKGQAVFRRLTVKPARPLSRFHGLASLKRWALSCRQVRVTVDQDVASEIR
Ga0314822_100692Ga0314822_1006922F059087MGVHISFTHPPSAIRSPMGAVAFAIGLKLLVPTPGKNGSWAVKDTIE
Ga0314822_102643Ga0314822_1026432F105419MRKFIALSALLVAAAASNGCISTTMYGCEITETLAPGASEGEVVMKHGAPDNIVYLGGQYFNPQTGERGEVDKYLYEYRIGGGTTLLGQVFASDEFHNIAYLIEGGRVMGGGYVGEGKGSIILGMGGILSTPLGVIDLRMGGFLHPKARAGYGGDGNP
Ga0314822_103630Ga0314822_1036301F030637VTSFPLRRFEDSMRCPVLCRQNAGTSHEVGCSPEFYERRPCGPIGLSAATSTLRFLARPGGSTSCVVPRSLAKTGSSSPELGLLFRVRTASNLPHARMRRAPSLGFRSQSRHQLRRSTCERGSQPRPMFRPRCFAHPRRFALSTALWACFIPLPRPGFTFQGFVPAAWPARLVDESFPHVVGRRHLPSSFLGGSSSGSLAFRALIRAAIRSNRRGV
Ga0314822_104510Ga0314822_1045101F001633WAFVTRSFPAAHAWTRSLFAGGVLPDATLRGMRMFRSHGGTVLTVAGRELSSEASAPGSDAPCRERRAGRGVDTPATFIFRVGTFYRGVGISLWLIVGPALRV
Ga0314822_104619Ga0314822_1046191F000344MRPKHLHAAESGVGKHIARESERVQACAAGKERVTNAH
Ga0314822_104799Ga0314822_1047991F002242ECSVRCPKDMCEKDSCPKCETVCAPAQCHTTCVAPKANCAPLCEETSCSWSCAKPTTCPRPKCELQCSKPACDVKDKQKCCKCGAKGAKRAIAAAPRFEEVHSDAEMMPSFMEVVASFKHAAENGVEECCPCKAK
Ga0314822_104905Ga0314822_1049051F000203VRHSLFPVPALGANLAAGFPTLFSTASGVSGLVAGPSSVLQRLDFE
Ga0314822_105561Ga0314822_1055611F016001VFSRRLDPIPSWACLLQVFALDAVGTPSRSLTLMILMATLSSHCRHRPSAFRHRAWLASLEAAYLLEVSHLPAMLSCPNISDEVRRSAST
Ga0314822_105591Ga0314822_1055911F053640EQSKRGGLKYSAESTTGIIPGDRGKAGGNWCRPPLMPAKAVMRHISPVPLAGVVSGQSTHELGTEPQAAIRNRVEWSQATQGVSTCASTQLPQRLRLLLRRPERHRVSRRDDPAKRPHSPHEWGAQGTYGGGERTDLGKVREPPHRGGVKHTSPSCKRQRSLRGKRSDP
Ga0314822_105591Ga0314822_1055912F001633VLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASAPGSDAPCRERRAGRGADTPATFIFARRHPYHGDGTGLWPVVGPALRV
Ga0314822_106752Ga0314822_1067521F013934DKANIERIQLLLRRHEQVVEEKRTHPEEFLRQNEQFQEAFGRIARATIVPVLEEVKDILVGKVESASIFHRRTAGGLRVKLDRWEDFERSLLFFGDASTQSVRVTHEGVGFSLLSQKLSLSQVTAELVEEEAMKFLKRLFGQEQLRRPMHVPDPADRRRPMSSSPASPVRLDYELVRV
Ga0314822_106968Ga0314822_1069681F005048VGLKFEHTTPIAEDCLQDVVVETFARAKADDGLIALVVEPRHVERQALVRSLRELGRRAIGVATALDAVQLLGREGEHVDTVFIEAESSSLPSLELVEFLAHNHPHVRRVLVGEPSEIAASWVAQATGEVHALLETPCDQDAVHRVLHRLQFTPHDGALS
Ga0314822_108621Ga0314822_1086211F026607MMKRFVSTTVALALALSASVALSATYVTGPLPSEFGGGFIPPNPAILKNVQKANKEGAKLAASVEKCYSKGAANYSKGKATGVSTCLNDPAKGVLPKFNAKIAGIAAKAPGLPPCHDFASDGALIAGLVKGFNGLTYCQSPSGAFVDGTASF
Ga0314822_108673Ga0314822_1086732F099956MTDRERHPGPASTFHLASGVKLEPLGDGSAVLYSKELDQSLSLNHTAALLCSYA
Ga0314822_110869Ga0314822_1108692F001679MSWRQKAMKGVEDCEKLGGTVKQVMIPGFPNQRILNS
Ga0314822_110956Ga0314822_1109561F015442LRASERPLREIGSGQVVRAGGLGSVNPLSLKGGSGESTRNRSGNLFAKLGAGHAGGER
Ga0314822_111150Ga0314822_1111501F011252VSEYTFIEPNAAFPLPATFNFDEYIETERELWALFPETDGRRVNFVQIGLTAMIYAEVPDTGAELGFDETYILMPCEDFAMRPIRMRACRRLTLSEYRMGHLTAIKLVGKVNEAGEVMREIGCQILGDEVLSEAQAR
Ga0314822_111749Ga0314822_1117491F008500NNFRAVTSVSCSNCHAAGFIPVIDEVRDIALANAREIGLNRDEVEQLESIYVTPQEFARQVTDDSQNFYQRALQTASLPVQGGDPISATFLRFDQDVRIEDAAGDLGLTPDELADTLNLLNPVLSVLDRGVLDRDDFTDVYVDSLCILSTNLENQPDVAVCDAAAALLEQ
Ga0314822_112401Ga0314822_1124011F005048DFVVETFASAKADDGLIALVVEPRHVERQGLVRTLRELGRRAIGVATALDAVQLLGREGEHVDTVFIEAESSSLPSLELVEFLAHNHPHVRRVLVGEPSEIAASWVAQATGEVHALLETPCDQEAVHRVLHRLQFTPHDGALS
Ga0314822_113475Ga0314822_1134751F048822VLAAAVAGIVSGTAVAQGQWREHGYANQGFGIAWPAEPNIQEVEKFEAAPGKMVPATIYSLDYNKSLLKVTVIEGRDANLNEDAVIRHQVAKVVQGGRVTFDFPHRIYRIYGRQMSVARPNDSVTQAVFFFANERLYLVESTRMRGGEDIDLIKFQLSLTFDRNVRNRT
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