| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029666 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114292 | Gp0306343 | Ga0265600 |
| Sample Name | Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_80m (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 51898341 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 7 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Canada: Sakinaw lake, British Columbia | |||||||
| Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | N/A | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F033389 | Metagenome / Metatranscriptome | 177 | Y |
| F046170 | Metagenome / Metatranscriptome | 151 | Y |
| F071959 | Metagenome / Metatranscriptome | 121 | Y |
| F076133 | Metagenome / Metatranscriptome | 118 | Y |
| F088317 | Metagenome / Metatranscriptome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0265600_107919 | Not Available | 1130 | Open in IMG/M |
| Ga0265600_114177 | Not Available | 812 | Open in IMG/M |
| Ga0265600_122566 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 621 | Open in IMG/M |
| Ga0265600_125034 | Not Available | 584 | Open in IMG/M |
| Ga0265600_126404 | Not Available | 567 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0265600_107919 | Ga0265600_1079191 | F046170 | MIRIEDFGEIGYGGLVTLTEWWDNKRIDEGKIGAKDVFKKASFYTYLGVGLTATLMSVFGWMKRYERWEEHVSHGFLYDLPRFAYGLTKALGAGGKRGSDSSAVQEAQRILNEKMRAKALGSGRTADRSYQQEFETVAPHAF |
| Ga0265600_107919 | Ga0265600_1079192 | F071959 | MASRNYLVMSNDMTFTDKKEYRTKALAAGLERCGTKSIGDINSDVPGLQAIPIANKSARVAAIKAYIETGAWPKTIDQRELAPLTDFVAAAAQDFWQTIALGAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVGGNIQAQFDMQPLGTRLETAAFFSEPVVIDPQELF |
| Ga0265600_114177 | Ga0265600_1141772 | F000344 | MRPIHPHAAESGVGKHTARNCESAQACAAGKERVANAHP |
| Ga0265600_122566 | Ga0265600_1225661 | F088317 | PEENVKYPERPKLTSADVNKAAPKTRRDHYKGAQTPPMPEMDKSQIMEWVETGKPEDPSRYVMMPPREVPYRKLPLAVKFVSCNTRHLKEIGAFRTMLPEIFGDAGYKAVDDAYASFADGEFRTAQSRGMLKNAPNCSLQEIAAHICTVYDIQNFPIVIAEADYDNEIVRIQLYKGLPRHCPYDVREGDYRLCAATAGYERELVKM |
| Ga0265600_125034 | Ga0265600_1250341 | F000344 | MRPRHPHAAESGVGKHTARESESAKACAAGKERVANAHSHKL |
| Ga0265600_125034 | Ga0265600_1250342 | F076133 | GGFDPCADAVTPEGFGCYCADQNAVTVSGGPTPPKGLARSTSEARKEIGTAGRERTWQSP |
| Ga0265600_126404 | Ga0265600_1264042 | F033389 | MVSHRAKNKTNAKKLATKMRRKGFASNVFKKKKGYGISVTRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |