Sample 3300029640

Basic Information
IMG/M Taxon OID	3300029640 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128792 \| Gp0224287 \| Ga0206093
Sample Name	Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0128792 | Gp0224287 | Ga0206093

Sample Name

Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	17899695
Sequencing Scaffolds	22
Novel Protein Genes	23
Associated Families	19

Dataset Contents

Total Genome Size

17899695

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa	2
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4

Ecosystem Assignment (GOLD)
Name	Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Ecosystem Assignment (GOLD)

Name

Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	desert biome → desert → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

desert biome → desert → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.3049	Long. (^o)	-116.2547	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: California

Coordinates

Lat. (^o)

33.3049

Long. (^o)

-116.2547

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F000243	Metagenome / Metatranscriptome	1476	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F001537	Metagenome / Metatranscriptome	674	Y
F003861	Metagenome / Metatranscriptome	464	Y
F005444	Metagenome / Metatranscriptome	400	Y
F007073	Metagenome / Metatranscriptome	358	Y
F014836	Metagenome / Metatranscriptome	259	Y
F021791	Metagenome / Metatranscriptome	217	Y
F025222	Metagenome / Metatranscriptome	202	Y
F028190	Metagenome / Metatranscriptome	192	Y
F033058	Metagenome / Metatranscriptome	178	Y
F048649	Metagenome / Metatranscriptome	148	Y
F063225	Metagenome / Metatranscriptome	129	Y
F073141	Metagenome / Metatranscriptome	120	Y
F094695	Metagenome / Metatranscriptome	105	Y
F102215	Metagenome / Metatranscriptome	101	N
F102608	Metagenome / Metatranscriptome	101	Y
F104572	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0206093_101115	Not Available	1350	Open in IMG/M
Ga0206093_101232	All Organisms → Viruses → Predicted Viral	1269	Open in IMG/M
Ga0206093_101272	Not Available	1246	Open in IMG/M
Ga0206093_101670	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	1068	Open in IMG/M
Ga0206093_102014	Not Available	966	Open in IMG/M
Ga0206093_102313	Not Available	899	Open in IMG/M
Ga0206093_102449	Not Available	870	Open in IMG/M
Ga0206093_102773	Not Available	814	Open in IMG/M
Ga0206093_102827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	806	Open in IMG/M
Ga0206093_102851	Not Available	804	Open in IMG/M
Ga0206093_102886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	799	Open in IMG/M
Ga0206093_102924	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	793	Open in IMG/M
Ga0206093_102973	Not Available	787	Open in IMG/M
Ga0206093_103477	Not Available	726	Open in IMG/M
Ga0206093_103549	Not Available	719	Open in IMG/M
Ga0206093_103854	Not Available	688	Open in IMG/M
Ga0206093_103966	Not Available	679	Open in IMG/M
Ga0206093_104238	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa	658	Open in IMG/M
Ga0206093_104247	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa	657	Open in IMG/M
Ga0206093_105072	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	604	Open in IMG/M
Ga0206093_105920	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	560	Open in IMG/M
Ga0206093_105986	Not Available	557	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0206093_101115	Ga0206093_1011151	F063225	RGVVSLAIGQKDQLPNITVSVWADPVNPALFLRNGSSLPSPQFTTFTDSKGYFTVNTLSFLDTPSNNQTSGQTKRRFYFSLTGTADDRSSSVQTTFSLLPLWWNFELTNTQWSGTGSLNNTNSSPTLYFYMSPPFSTSEALVRVILSWGTLISNPASSLPDVDLVVAGPVEPQSIQVYGTGIVNFQNKILHGSVQVIPFVRLVADSAQGFGPEVMDFYGQPSSSSSSALSLGFSSTYASGALANAYEIWVDRPNSSPNLDSAFTYLFDTNSFIVVYQNDGTSGGNNQVLFDQITNVPFAFGFYNGDQWNKIPSDATLWHVFDFSQVAGGLVFNGFPGENGTIVNPTPPGAKYGYSAQFFESSKTIPCGHVAVRGANPAYCPATLTYPQI
Ga0206093_101232	Ga0206093_1012321	F063225	TYNFNVSAQGYTTKVQPVAVSTTTTSITVCLDEAAFCGDGFCAGNETALPTASTRCFDCGRLRGVISLAVGQKDQLVNITVSVWADPVNPALYLRNGTAVPAPHFTTISDSKGFFSINNLSFDAGVATRTAGQARRRYYFSLTGQYTDRTTGTDNVTQLLPLWWNYELTNTQWSGTGPLTATNNSPSFYFYMTPPFTTNDALIRVILSWGTLISNPANSLPDMDLVVAGPVDQSSITTFGTGIVNFQNKDQHSSLRVLPYAKLVTDSAQGYGPEVMDFYGQPGQFALGFSSTYAPGAAANAYEIWIDRPNSSPNQDSSFTFLFDTNAFIVIYQNDNVANKQVLFDARTGVPYAYGFYNTDQWNKVPDEATLWHVIDLSQAAGGVLYNGFPGENSTDQTAVAGAKYGYDAKFFESTKSIPCGH
Ga0206093_101272	Ga0206093_1012722	F048649	MKKLIIALAAFMASVAAYGQGQFVFNNRIGTEVQARFILPTDPATGTSSSVGSPDWTVQLFGGTQGTPAAQLVPLNPASTGFRGAAGTAAAGFVTGITPEVPGVAPGGAASILVRVLGPGGIQADFGPYNVTLGGGTITPPNLALGTTPLVVPEPTTLALGALG
Ga0206093_101636	Ga0206093_1016361	F000237	XFHYIVALGISLSATHLSDLTLTIIANIYXSLFNNIYKTYYIIFTNKHLNVDQMTRLMILHYFTPXYYLYLVQLHILFCHESXDSDSGESTYEDKSGSYISXFYDAFLKEIQDAXYXTMFVFIYFXLHHFNPSTVNYFFFERXNIAELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMGLFFILLTFLPIIYNXYNVYNKAVPTIPMQNSLIQTSAFIIFMLSLFCSASMLPCGRYYYEPEGGYVGNPXVKFSYQYIYLYMAXFIHHLDLIDHYIFQFFQTFIRKCLKLYKKNTNILKNTISKFINFKDLNKNYFNLLIKNNHYKKDEIKA
Ga0206093_101670	Ga0206093_1016702	F028190	MPTMANITVKKFDGTTDIVYDALSASGGDGSPAVWRQDTGAASGLPVGLRKLFKLWTSWNGPRTARQMKYNFVSPYAVQDSTTTLYSAKDRVVFDGVVTIPQGLPANEINEAIYQGLNLLASTLVKQSGSSGYAPN
Ga0206093_102014	Ga0206093_1020141	F073141	MADVKIQETKQVTSDNDLNIFLTQLYDVSKIAEEEIEAWYDAYSYKGFDRKKVLKDLMIKVNDIKVIQQIIMICGLLGPQRAALTKLMNGRTIGSYGIPASGMKGSGGVSCQRITAATADLCAYFLKKVDAPKRLNLPCPGWLQFPSAGSIKLPGELREMHIEFSRRFSTVIGGIFNEQIYQQMMNNSYLDPKLKLFDEQITITQDPTIPIPAPAPSFNPARGDVGPPKTTASDRVRRP
Ga0206093_102313	Ga0206093_1023131	F094695	LPDGGITACSVRDPYFRENFGSRSEVSSGKSIGPSWVRPFPVRRLPFRAASFRFSLSTVGQRFSRPCHASLRVTRLLEALPPVHRPRMRVREHLSCDFVPYSVRQKQAPVSPGDSNLRHRPSSGFLTLSTSCFACNPRGLVSSRLRSWGSTGSADSHQPFDQCRATRFRPSSSRLSLSP
Ga0206093_102449	Ga0206093_1024491	F007073	IILVVFGLACAVAALDAVGEGFASTPDQVVNPPNWHGTWTANGRYGGVMYACPVGERVYGVYSNAGFFIGRVNGREMEGTWYEGGRGDRNDWQGSFKITLSADNLEFDGFWYRVTQDGTELRWHEQRLGAPHPSAPTHEQCLVPYDKESLVGTHYSVPGYGREPVTYSLCRDRWDQIYGSFGSPDGYVEGWSVDSGSGFQGYKYDSNGRSGAFILRNISPTEARGFYWRGRLATQNLATAEEVVLHRTSYTGNLEDCERVGPGFLERLRGPTNSAGALSISLALVAVLF
Ga0206093_102773	Ga0206093_1027731	F000344	MRPKHPHAAESGVGKHTARESERVQACAAGKERVTNA
Ga0206093_102827	Ga0206093_1028271	F000344	MRPKHPHAAESGVGKHNARESERVQACAAGKERVTN
Ga0206093_102851	Ga0206093_1028512	F000344	MRPKHPHAAESGVGEHTARESEAPNVCVGKERVANAHP
Ga0206093_102886	Ga0206093_1028861	F000344	MRPKHPHAAESGVGKHTARESESAQACAAGKERVANA
Ga0206093_102924	Ga0206093_1029241	F104572	MRPIALLAATNGVGDPAAHLRRGRPMSEHGKESVASS
Ga0206093_102973	Ga0206093_1029731	F033058	LAWFAGRWRNHQSKQAEKPHSTIHPRERLDGPATRPITPLAVENGVGKLPALSGAPNGSMGKRE
Ga0206093_103477	Ga0206093_1034771	F102608	MNQIQFFVVFFVSLFVSSQAQNGCQYYDSCGVCNGDDSTCCQDYLGFEPAEVDVELLKWTNQQLIGEIDQLQEHLNATRDALQDSYINEIDGGRLDLSEYIDAIHAFCAGCECSAEDCDSGRTGCGEEECKLDCECLSLSQFEFLQSAFLGAIRSVNSI
Ga0206093_103549	Ga0206093_1035491	F014836	LLALVAIIFGTVDCTCPAVQGYCPQEMIYQGCHCFHEWNDANRVGNWTFPENWLQLYEPAWVSFVSIAGDNTVTVDVERRVNELYVGSNRWDTTRLVIDEDLTIVYDDVPVISAVRGYRLPNGVVRLVIQGKGFGFVSEAIQVTVHEHYEIDGDSNVEDREEFVYDCQHVTLTYRDAKIECNIAPTRPMPYTLQVQVAANNMVTDYQFLSKYIE
Ga0206093_103854	Ga0206093_1038541	F001537	DNETTSDFQFAPFTIFLLFNYSPNMSIINRIVGVIHLVLYAVLAALVGRVLNHIFNGASGYSNNVTLFMAGLATVAIICNGAWALVLLTHGHRSWKLGAALSAISGLLLLAVSAKHLEVGGGYDRLTKATVAWSIISGGAAVLTGLALLLTRDHRHHDEHVTVHHPKTATTGPAVV
Ga0206093_103966	Ga0206093_1039661	F021791	RIKPHAPPSEQIPANSFKSRPCDITPQVEYLRVSLSLFN
Ga0206093_104238	Ga0206093_1042381	F003861	SVVVAVLVCFCVVAAYSLPLKPLWPKAFSSTVAVRRTRDPFPSFFRWFWDERQNKDRLDGVVQFADELYFATLIFDHANGTEYHVYYQESTAVCFTSKIKTDLPKPNFDNLQYIGKALIDYTPVYHWYIENKARDLFFQVYDNQENREVLRIDFDNGRRERAESWTFLELDIGAQGKEIFEVPTNILPQCTPFPSEQESKLSFF
Ga0206093_104247	Ga0206093_1042471	F005444	KLIVVLLLCVAVCALAQTPQKPIWPNGWSATVRVHRSDERHPSFFRWFWDRSQNKDRIDGVAKWKDEFYLAERIFDHNAGKAYDIFYQEDAVNCFDRKINQTDLPKPTFSQFQYIGKALVNYQPAYHWVYEDKLRGFLFALYDRQDNREILRIDIDVITRRRAESWIFLEYDIGPQGKEIFEIPQIILDQCNDF
Ga0206093_105072	Ga0206093_1050722	F025222	MIACDAMAPAPMAFLSERYTRSAGDARQGVPDEALIDALGFDERVTKRIQRALEREGFVELTTVPPMTHLGRPVMDHASRHRRQQTIGMTPRGMRLMEDLLAARADTARPAPSASAPA
Ga0206093_105920	Ga0206093_1059201	F000243	FLAAIATAMPLVEVKPVMTTLLPEFAVPNAGVYFDRTVNTLVHATGSVTFNKGCTATDQYGSNKCSWDWNEDLTVTLAGALQEDITSGKLVVDLKLNNVIPFSFSCPLCGANCTFDIPIIKTPVSFKMPDCPIKAVTIPSKTDPFKLPDKNPLGIAASVTGTVQIADQTGGVIAKLSLDAKVS
Ga0206093_105986	Ga0206093_1059861	F102215	AAAFAGVTERDDHISANFWDKYQEPAAHQIKTIVRRSVDQLVNARQTAAVNFTTWCFEYQQYIDQFKWGLAATDPETNTEYFHGIVEDSSTDPAVVVGYIYGYSLDNQRLVQMAVDYNDNGYMRLFSFQFNPRNERYSDAFTVFSNADTTLTPQFLGSPEYTSLTKCA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029640: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences