x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 3300029639
3300029639: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300029639 Open in IMG/M GOLD Reference Gs0114292 | Gp0306340 | Ga0265597 Sample Name Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 7551858 Sequencing Scaffolds 5 Novel Protein Genes 6 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei 1 Not Available 3 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling Type Environmental Taxonomy Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Alternative Ecosystem Assignments
Environment Ontology (ENVO) aquatic biome → lake → saline water Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
Location Information
Location Canada: Sakinaw lake, British Columbia Coordinates Lat. (o ) 49.68 Long. (o ) -124.009 Alt. (m) N/A Depth (m) 36 Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F000344 Metagenome / Metatranscriptome 1257 Y F004323 Metagenome / Metatranscriptome 443 Y F041277 Metagenome / Metatranscriptome 160 Y F053640 Metagenome / Metatranscriptome 141 Y
