NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028247

3300028247: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8d (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028247 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133460 | Gp0294635 | Ga0256346
Sample NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8d (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25215426
Sequencing Scaffolds10
Novel Protein Genes14
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
Not Available4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_20161

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000212Metagenome / Metatranscriptome1580Y
F000344Metagenome / Metatranscriptome1257Y
F001360Metagenome / Metatranscriptome714Y
F008023Metagenome / Metatranscriptome340Y
F023359Metagenome / Metatranscriptome210N
F025755Metagenome / Metatranscriptome200Y
F025928Metagenome / Metatranscriptome199N
F032498Metagenome / Metatranscriptome179Y
F056563Metagenome / Metatranscriptome137Y
F076149Metagenome / Metatranscriptome118N
F078620Metagenome / Metatranscriptome116N
F085600Metagenome / Metatranscriptome111Y
F099393Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256346_100641All Organisms → Viruses → Predicted Viral2036Open in IMG/M
Ga0256346_100806All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1892Open in IMG/M
Ga0256346_103014Not Available1124Open in IMG/M
Ga0256346_103038All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1120Open in IMG/M
Ga0256346_104910Not Available894Open in IMG/M
Ga0256346_106187All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila798Open in IMG/M
Ga0256346_107161Not Available743Open in IMG/M
Ga0256346_108528All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus686Open in IMG/M
Ga0256346_109041All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016667Open in IMG/M
Ga0256346_114968Not Available521Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256346_100641Ga0256346_1006413F008023VANKATSPLDATGVAAEKAAKKNAAELKKRQEEISIANKLEAESLERDVFDPKKPDAPLVLDEIESVGVSVSNEYVVVRTITDIEEMTFGVVNGTPQSYSFKTGVKYRVPK
Ga0256346_100806Ga0256346_1008061F001360MSLAKFRKVGTKTGAGRLVVSEGIAPAAYLLPAAGLPTWYLDSEDDRFEIVIPKGTILSVVANASTGDAEVAPANGTGSSVTWGDSMPSSWDPMDGATPSYSSGATDTVVVPARSVPVGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVDGINADVTVGSVVRADHMGRPVKAAAADFYNSSAVYSYLQVGKVVEVEKFATNFDDGLLSYVQLRSDPGALKTVFELTRSGTYSGKLGIRSNLDVHNVIGAFRVNLTL
Ga0256346_103014Ga0256346_1030141F025755IRKKMNKVVKTIGVLSIASLVSTSAFSQITISGYAEVGFITGSADGTRGTSTSKGMGSEFLVTVAGKGKMSNGWEYSAYQNFDTDEVGNGRDVANSNPMTTRAVELSPSKDFKLFYTYDGVYGGEIARTAVPTVTERAVDLTGQSTLAEFIDVTSGTHAVGFEVLNVGPAGRLSVAYAPNLDATQSQSSDRVYAATNYVTGGRNTASGYSIGY
Ga0256346_103038Ga0256346_1030382F076149MNKLLLTTLGMVAAVSAAYAQGTFNANNNFTPAGASAKAFVLDPNGSPLAKANGRVEILSGGTSLSPNGSAGVALTLDGLFFINGLVAPGAGLGGTANLVVRAWDVTTGATYDAATARGSVNVVISSLGGGTTPPATFGNNSDFKGLKLESAII
Ga0256346_103860Ga0256346_1038602F085600MMQTDVKGATCAANGSTTAYNGRTRLKGLWYSATGAGTIAVKDNATTLFTLTIGGAESNYVLLPGEGVLVQTSLVITNSAAV
Ga0256346_104102Ga0256346_1041021F000212PQCAWKCDDPKCPAICEPVCEQPKCHTSCAEPRNAVCDVKCEQPHCTIKCPDKGCAALDCPKCVTVCSQPNCVTHCQAPKPECEAVCEEPKCDWKCHKPQCPVPKCELVCENPNCSPQVNCCACNNAQVGVFNGMVFKEAEKNPYCCPCNGQNQ
Ga0256346_104102Ga0256346_1041022F000212MVKINEILNKCHPQCAWKCDDPKCPAICEPVCEQPKCHTSCAEPRNAVCDVKCEQPHCTIKCPDKGCAALDCPKCVTVCSQPNCVTHCQAPKPECEAVCEEPRCDWKCHKPQCPVPKCELVCENPNCAPQVNCCACNNAQVGVFNGMVFKEAEKNPYCCPCNGQNQQH
Ga0256346_104910Ga0256346_1049102F078620VVHAASLKNLNSAAAPHDETFMYHGVDCGPIVMFKNRKQWPTPPTKGFTETIDALDNTAQLLSEYQLKEKLPGTGLDEPFEAGADVTGGGTTVAEEA
Ga0256346_105747Ga0256346_1057471F025928GNMSLLNGKKGKDLAFSDYVSSAVRGLFMPYFSLPIILLGVAVGYATDLVLKPILADGFANVGSIGAMAGPIATASGISIVTGIFIAVYGQIYGSLATTAKGATPTIGETVSVIGQRGLSVFAAGLLVTLATVGIFVVGLVVVIGGAVAANDAGVTTGLFALFLIVYIYLMMRLGQAGWFAADGMGAVDAVKASWSGTQGHLMKIFFWSLGGGIVFLLIGILVGLLTNSLPAAIGSSIGTGIGLVFTYASGAVLYRRITAK
Ga0256346_106187Ga0256346_1061871F000344MRPRHPHAAESGVGKHTARESESAKACADGEERGANAHS
Ga0256346_107161Ga0256346_1071611F099393PQRERETLMLVERGMPMRQIFLHGETQAPNSACGQVTGSGPLAGRVKKVVFFSVCLPALLIALGAGGSLNLAYGQGESNTAVSTAVRATESGVSDQTRSTRERSEPTVTGAAMHVALFVPRN
Ga0256346_108528Ga0256346_1085281F032498GFLTDYPGMLHVPAAVRGSVDWTNAFIRSRIGKKWGFLPSQHGLHPKSYPAFCRERTMSNRLFTCLPEPPKVDSTLLLAVRRRLDPDETLAMFLHEWEHGREGGKKRDVYKPSVGCVRRTYAYRAVKLWSRFTFLSKLASLKVTARREEESLRFLPADYVSKREDEVLKELKLYGSKCFEDL
Ga0256346_109041Ga0256346_1090411F023359SIVESYSTYDSNSGGYVKGYFKTSQAFVVIVLVVSFVLTVLLTLFQLDRVRNWFIFSIGMSFTRIAITILAALVLASSVIAFLSFLGLPSGFKDEIPNCVDGPCREFSSSIKLPDLIETQNSQKYTLVNTRSWGPVEGWFIVLGIIPVSVVLLALVVLNKFPLPIDSEASSGEAL
Ga0256346_114968Ga0256346_1149681F056563VVSVSSGSTIAPESDPRPAVLNIGKQITAALSKLQ
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