NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028079

3300028079: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepB_8d (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028079 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133460 | Gp0293498 | Ga0255305
Sample NameMetatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepB_8d (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size97624726
Sequencing Scaffolds35
Novel Protein Genes35
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
Not Available14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium HGW-Bacteroidetes-211
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11021
All Organisms → Viruses1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_20161
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriverriver water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000344Metagenome / Metatranscriptome1257Y
F001299Metagenome / Metatranscriptome727Y
F004916Metagenome / Metatranscriptome418Y
F007472Metagenome / Metatranscriptome350N
F009078Metagenome / Metatranscriptome323Y
F016245Metagenome / Metatranscriptome248N
F023359Metagenome / Metatranscriptome210N
F023494Metagenome / Metatranscriptome210Y
F026478Metagenome / Metatranscriptome197Y
F039171Metagenome / Metatranscriptome164Y
F049019Metagenome / Metatranscriptome147N
F052593Metagenome / Metatranscriptome142Y
F054052Metagenome / Metatranscriptome140N
F054804Metagenome / Metatranscriptome139N
F058592Metagenome / Metatranscriptome134Y
F058729Metagenome / Metatranscriptome134N
F060853Metagenome / Metatranscriptome132N
F063376Metagenome / Metatranscriptome129Y
F063745Metagenome / Metatranscriptome129Y
F076149Metagenome / Metatranscriptome118N
F079635Metagenome / Metatranscriptome115N
F080126Metagenome / Metatranscriptome115Y
F084131Metagenome / Metatranscriptome112N
F086357Metagenome / Metatranscriptome111Y
F086665Metagenome / Metatranscriptome110N
F091922Metagenome / Metatranscriptome107Y
F095369Metagenome / Metatranscriptome105N
F101271Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0255305_1009241All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1353Open in IMG/M
Ga0255305_1010606Not Available1266Open in IMG/M
Ga0255305_1010716All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.1259Open in IMG/M
Ga0255305_1011815Not Available1201Open in IMG/M
Ga0255305_1014944All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii1066Open in IMG/M
Ga0255305_1015013All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1063Open in IMG/M
Ga0255305_1017290All Organisms → cellular organisms → Eukaryota988Open in IMG/M
Ga0255305_1017298Not Available988Open in IMG/M
Ga0255305_1017940All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage968Open in IMG/M
Ga0255305_1018111Not Available964Open in IMG/M
Ga0255305_1019570All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium HGW-Bacteroidetes-21924Open in IMG/M
Ga0255305_1021945All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes868Open in IMG/M
Ga0255305_1023679Not Available834Open in IMG/M
Ga0255305_1024297Not Available823Open in IMG/M
Ga0255305_1025236All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila806Open in IMG/M
Ga0255305_1025759All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102797Open in IMG/M
Ga0255305_1028487Not Available755Open in IMG/M
Ga0255305_1028789Not Available751Open in IMG/M
Ga0255305_1030758All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.726Open in IMG/M
Ga0255305_1031054All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage722Open in IMG/M
Ga0255305_1032730Not Available703Open in IMG/M
Ga0255305_1034908All Organisms → cellular organisms → Eukaryota679Open in IMG/M
Ga0255305_1035289All Organisms → Viruses675Open in IMG/M
Ga0255305_1035869Not Available669Open in IMG/M
Ga0255305_1036133Not Available666Open in IMG/M
Ga0255305_1040281All Organisms → cellular organisms → Eukaryota → Cryptophyceae629Open in IMG/M
Ga0255305_1043366Not Available605Open in IMG/M
Ga0255305_1044474All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016597Open in IMG/M
Ga0255305_1046037All Organisms → cellular organisms → Eukaryota → Cryptophyceae586Open in IMG/M
Ga0255305_1049130Not Available567Open in IMG/M
Ga0255305_1051177All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage555Open in IMG/M
Ga0255305_1051862All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes551Open in IMG/M
Ga0255305_1057086Not Available525Open in IMG/M
Ga0255305_1058097All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage520Open in IMG/M
Ga0255305_1058847All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0255305_1009241Ga0255305_10092411F049019MRTSRKLTHVLFAVFTLAIMSMAALAADPGTSLPASSQASDQKQGSLLIYSHYGSVTSNVSANDTRINITNTHVTSSVVVHFFFVSQACNVADFKTELTQSQTYSFLVSDFDPDTVGYIMAVAEAEDGLPIAMNFLIGDLFVKSSTGPFSANLGAIAFAALWDGTNNGNNPNESGFWRIPGGDATTPSVNITFGSAGNYNALPRTLAVDNIPSFAGGDRALLILLTPVQSFVTGGGAVGTLFGLLFDDAEQSQSFQISGGSCQSTNIISDSYPRTAPRFTTVVPAGRTGWMKVYKTSDLGILGSVIVYNIGGRDVNFHGGHNLHHLTLSGTQTATLPVFPFEL
Ga0255305_1010606Ga0255305_10106064F058592MVILLPVPAAVPPQFPLYHLQLAPAPRVPPTTDSVVLLPRQIVEVPEIEVAGRDVS
Ga0255305_1010716Ga0255305_10107162F101271MTTDLPIGQHERDAMLLLFDFSEAIAHQREALAKRDWAKLQRSIQALQHTMHQIASFPGGAEGVRHQLVASEGEAREAADRLIEKVAIERRSSAELIRLQLQRLQALQAMTSLDDDAGTYTESGATKGRSGRLSTWV
Ga0255305_1011815Ga0255305_10118151F079635AATDPYYDDAHGENDQNVCRDGYVRVMCNGRILQIRENVVNQSQCMNFLASARPADNLSECIHMANELATVENVKVICDWIAAHIEFASRNAPDDERRSFDQRFFLLNAAGHAAYAAATTDAEKADILDSRKDWLRWRVDDPTNEDPKRSKHGGQRTAPFSRGGAAPQDRRHRTYEEIQHIMFVANFLELHPTDWHRTFAQAENERIAAQPPGPFQEYGLDPADKFAETVMELCCHILGDMILGCESPVDMQHRFPTLIGAKALTAKDRYDIATADLWIHGDDFMFEIVPEFQEMQRQEFAAAQAEGMSAQDIEAKYGKPIPDWTYESTQEERAFMKEVPQKEPNEQLKVPAIQVNDSQEADPGFEIGHHWWG
Ga0255305_1014944Ga0255305_10149442F004916MKLTWILFALMALSSLALVFATEVQEDCHPTCRWQCDDPICPAQCHPVCERPKCQVHCEETPCAQFKVHCDKPQCNVRCPKDLCEKSDCPKCETVCAPAQCRTSCVAPNAVCTPMCEETKCDWKCKKPTLCPRPKCELVCETPKCAAKPPAAPAANTTCCACNQANLKASLIQAGEAKGVAPSFLELMNEVKFQEQQGQTPCCACNKQ
Ga0255305_1015013Ga0255305_10150133F091922AELEQLIADTLLPVYEDYCRRYPFSPLAKKISYDVIREIKHAKDPGALLKPRKNLA
Ga0255305_1017290Ga0255305_10172901F007472HDLAVGIQLGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKIEYSYTRVAASDTSLASTLYNYTQTTFDMFGQTVNVQVANTKIVRTSQQTYAQLGASGVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLVVVVAETIAFLAFLGISDKIAKDSPNCLSGPCQKFADTVTTQLGLSDLLVSGGNVAVSLQQVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0255305_1017298Ga0255305_10172981F079635ATDPYYPDNHPEDAQGVCNPGYVRVMCWQSSACLQIRENIVQQSQLMSYLATGREAENPSECIHMANELATADNLKIICDWLAKHIEFAGRDAPDEERRSFDRRFFLLNAAGHAAYDAASNDQEKADILDARKDWLRWRQDDPENEDPKRTKFGAQRTPPFQRQSPVEQRRHRTYEEIQQIMFVANFLELIPTQWQQDFAQKENERIAQQPPGPFQEYGLDPVDKFADSVMEICCHHLGDMILGCLSPVEMQHRFPTLIGAKVLTAKDRYDILTADLWIHGDAFVQEVVPELQALQRQEIAQAQAQGMSPEEIEKKFGQPIADWTLES
Ga0255305_1017940Ga0255305_10179401F001299HGGVATAHNGVADRLLQNDALYNSMKGDWQRTDTNKSGNIKVTTGREDGKFFIKREQNVDEIIRHCREYRAAAEAGIPDPMAPIMPDGKLGYKWMELPRVISIRISDDYFGGMPWDAIKHDKTLKAQFYRVVEREYPQFVCYPRGRLPIPVDVPYPTKRGQQRFFKGI
Ga0255305_1018111Ga0255305_10181111F058729MKKVLLSLTAAAAFVFAAGTVNAQVNGPITGKTQVVQANANLQAEILVTIPSPGADGGAVRFGTVPRNSAINMDPRAVASTNLGFSSAPAMVSITSQPDEPLRIEYPSAVLLSNNTSGTLNYITYRPQISAINDHVALTATNREASKYLGTTNPGRDQVTADGGTGEGSTASTAVNGYVVMSPFTGTPAGKVTLFVGGKLYDGAANTPNISSNIPNTKQVGFYDGEFTLNILYLN
Ga0255305_1019570Ga0255305_10195702F058592MLVPVPVAVPPHDEVYHFQLPPTPRLPPVKLRVVFLPRQIVVVPVIPLAGTDVS
Ga0255305_1021945Ga0255305_10219452F058592VLLQVPSALTKYVVVELGETVILVPEPAEVPPHDDVYHLQLAPVPKLPPLTDSVVFLPRQIVLVPLIVLAGIEES
Ga0255305_1023679Ga0255305_10236791F084131RVGDTVLGRPELKAILRNAEKTLDDDIPARAQFLTQKQEAQKLAHQMFPYLKNKETPEYVLAQQALSQMPWMRNLPNADWIIGVQIEGLKALEAKQKAKPESKPKPAMSSKPPASQSVVSSAGGDVRAPSATKAANQIEALRMQLSKKGGVTANEAAAFLLAREKAKLNR
Ga0255305_1024297Ga0255305_10242972F054804MKIIITTQVYNNYGTKNDPYWKAKGAGDYVVQLPCDYTDEDVKRKVELPKAVIELHNTPMWWETWLGYHVVEDNILTDFESQQLEW
Ga0255305_1025236Ga0255305_10252362F000344MRPIHPHAAESGVGKHTARESESVQACANGKERVTNAH
Ga0255305_1025759Ga0255305_10257591F054052LLLAALLGVASAIYPDDHWSFSKKLTSSNIDDEIKSAVDGGKTMFVRLIASAG
Ga0255305_1028487Ga0255305_10284875F060853KQMAVQQLLDNLYLTPAPWRKWMQTREEIIQDWKAGKDFRIESGPYCSIRDIEYLRSSYNRIYIIHDRGSIEV
Ga0255305_1028789Ga0255305_10287891F076149MNKLLLTTLGMVAAVSAAYAQGTFNANNNFTPAGASAKAFVLGLDGNPLAKANGRVEILSGGTSLSPNGSAGVALTLDGLFFINGLVAPGAGLGGTANLVVRAWDVTTGATYADATSRGSVNVVITSLGGGTTPPATFGNNSDFKGLKLEGGVIPEPSTVALAAQSKKNVNPVHRWGEA
Ga0255305_1030758Ga0255305_10307582F101271MRLLFDFSEAIAHQREALAKRDWAKLQQSIHALQQAMHQIASFPGGAEGVRHQLVASEGEARETADRLIERVAIERRSSAELIRLQLQRLQALQTMTSLDDDAGTYTESGATKGRSGRLSTWV
Ga0255305_1031054Ga0255305_10310542F052593MAYIYPAPGVANVELTLEIEVSGDTNALAIPALQDITINNANDVFTWTQLDSGSKFNIPTTASNSIDMNLVVDQTVFFGSGSGADVAVNKGLFGLSKDKKLISFSLYMGDTNSGGSGKTISGTGYVVGLAPTVSADSPVWITPVSITVVGDYTV
Ga0255305_1032730Ga0255305_10327301F080126LVGLYAGTASAQCDFNSAPAKGVKGSMVRNYAPCPGTEHPTSNTETEGGTEACTPVVPAEVGGNGTTYTYGDKGKCDVTTSAKLVKDCSLAVDANGQSLGLQAGPCHITYVSSKCSGVYLADGITPIGTADDGWSLATLTRATFNDATNQDMTVIDFPVTFAYSTPSGGKMAVKSSSAEALIPLVGQNNADLPACTSLEIVDVSIKDPDGLPFAKLGGATKP
Ga0255305_1034908Ga0255305_10349081F063376WTNLKIDYEAFAYDKLPVPQTDAFASWLKKQLVQGHVVAWMIMWNGQTYPIYDLTPPAGMYGHIEPVIGIQSSHPLNDSTVYDDDVVLHFTDGGTNTVHRTISSLPCKWAGLNQAADCNGFEYGIGYPFGFGWAAKGFAADSKPFVPAALKIQPYLYEPDTRSGKKPEQLKGTLTASELIAGASYAIYRWDSVAEALTYTDSYKVLSFTATGSVFVYSDEKTFIS
Ga0255305_1035289Ga0255305_10352892F063745MDQLIIDTINSALKPNQHPQTPTKLSPRFKALARECGFVFWQNEPHGPGPGNIDWSCDYTSEFEHYSRELVTWTCELMRQEIVRDYAFGAARRTYEHIVVQD
Ga0255305_1035869Ga0255305_10358691F080126MKKVTLPLAAIALVGLYAGSASAQCAFDIAPAKGVRGSMVRNYAPCPGTENPTANTTTQGGTDSCTPVTPAEVSGNGTLYSYDVKGKCDVRTSAKLVSDCAEVEDSAGNNLGLAPGACHVTYVTSKCSGILGQDGVTPAGASDDGWALATLSRATLDDPTNGDMTVIDFPVTFLYSTPEKGKMEVDSSS
Ga0255305_1036133Ga0255305_10361331F086357TESRVEVTGDKSAKPTVQESTPVENNVVELKRLAGLK
Ga0255305_1040281Ga0255305_10402811F026478IQAKDFALKEIIKLSDSYRDMKIAKLISAEKARSAFSDGTNFFLKMELSCVSKCEAPLSPASTCRRGKYKGTNEIIVFWKDDGHYDGIAIDEFPQMDGEFHPCTPSYKGSEKCNPAEHRTPEQAALFMDDPEDDSVPRKEDL
Ga0255305_1043366Ga0255305_10433662F095369VAHIIRDGEIVPIPIPLNQRVKIGRHYQPPQLNYLANDQLWIQDVYTFKQIPWYMIKNRFERYLLYATLYGAIVVMLTMIGRYWLGAPH
Ga0255305_1044474Ga0255305_10444742F023359VVSFVLTVLLTLFQLDRVRNWFIFSIGMSFTRIAITLLAALVLLSSVIAFLSFLGLPQAFKDEIPNCVDGPCREFSNSIKLSDLLEVQGANTYSLVNTRTWGPVEGWFIVLGIIPVSVVLLALVVLNKFPLPIDSEASSGEAL
Ga0255305_1046037Ga0255305_10460371F086665QFFSVDDAPLRSVLWSHDSRVVIFPPFESYPQISAKGFTDLRAYVAAGNNVVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGGFSLYDSLGSVVVFYVRYDLGTIVYIGYQFDNPYQIDSWVRVIHAAMAM
Ga0255305_1049130Ga0255305_10491302F009078MVHLRKPAHLREEAITDKTGSGNRDAECSGKNVGRQARKGNLGQWKVTGGADFTTKPIRLSGMGKGSVLV
Ga0255305_1051177Ga0255305_10511771F039171ATWPEGYVYGTLREYYIKRHNSDDATMYEAKFQNAWDTVEDQNNLGKWSGGHTRLTSVWQPRQYRQYNIK
Ga0255305_1051862Ga0255305_10518622F058592VVEAGATVTLLPVPTDVPPQLPLYHFQLAPTPKLPPVVLSVVLWPLHIVVVPLIEVAGTDVS
Ga0255305_1057086Ga0255305_10570861F016245TLVGAGFACSASTTVTFVSPADGSGYVSISAGLVLTLQLSGGTFSAGQAVEFVFGGVTNPNSNQSHISNIHAATLNAPGNIVGASVTGYLPAIVNGLGALVVGLSNTVRQGTGIVMTVSFTPVDAVPNDGRFVLTLVGAGFACSASTTVTFVSPADGSGYVSISAGLVLTLQLS
Ga0255305_1058097Ga0255305_10580972F063745VDQLIIDSINSALKPNQQPQTPTKLSPRFKALARECGFVFWQNEPHGPGPGNIDWSTDYTSEFEHYSRELVTWTCELMRQEIVRDYAFGAAKRTYEHLVIQ
Ga0255305_1058847Ga0255305_10588472F023494MKGKAALNRAFVSFPQLNRLVTTTNFIDKKSRVREPLSITSLQLNQLSKVKTKEL

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