| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028035 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0306254 | Ga0265347 |
| Sample Name | Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE5 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21507617 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → valley → plant litter |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Norway: Oslo | |||||||
| Coordinates | Lat. (o) | 59.9989 | Long. (o) | 10.7903 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000664 | Metagenome / Metatranscriptome | 950 | Y |
| F007270 | Metagenome / Metatranscriptome | 354 | Y |
| F013334 | Metagenome / Metatranscriptome | 272 | Y |
| F016196 | Metagenome / Metatranscriptome | 249 | Y |
| F017737 | Metagenome / Metatranscriptome | 239 | Y |
| F047249 | Metagenome / Metatranscriptome | 150 | Y |
| F073790 | Metagenome / Metatranscriptome | 120 | Y |
| F089142 | Metagenome / Metatranscriptome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0265347_100790 | Not Available | 839 | Open in IMG/M |
| Ga0265347_102551 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium | 592 | Open in IMG/M |
| Ga0265347_103045 | Not Available | 565 | Open in IMG/M |
| Ga0265347_103725 | Not Available | 534 | Open in IMG/M |
| Ga0265347_103882 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei | 528 | Open in IMG/M |
| Ga0265347_104545 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 507 | Open in IMG/M |
| Ga0265347_104697 | Not Available | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0265347_100790 | Ga0265347_1007901 | F016196 | MSDVYVYHFMRRGRAGENILSRRCATLETINGKGEAVMESQIVVDHTEVDGNGYLVGRNGNESHLTDERWAQIRSLERRANSRDSEALTLNESGEGARSYLLRMESRELRKEAQRLRKQRADSMVGELGNRIDSQVFVEFRGDPTTG |
| Ga0265347_102551 | Ga0265347_1025511 | F089142 | MNFTTFVRKPFVVDAIEVTSENIAEVAKYVGDLREKEDGTPYILVDRRLVPNVFRVYPGFFMTKMGENVRCYSRKIFKEQFIVQTAEIKPWVEIMGKNDT |
| Ga0265347_103045 | Ga0265347_1030451 | F000664 | MTGTFKIPQDLLSEAKRTKPKNDRLHVEGWRNSWLSRLAEMLVGKD |
| Ga0265347_103045 | Ga0265347_1030452 | F007270 | MRLARPVYESLPLIYMLIGAAAIFLFYINPPGFAGKAAFLIGVFAETAALTLFLRRQDCRELSREYSGETIDLPSNLNS |
| Ga0265347_103725 | Ga0265347_1037252 | F073790 | MARFDTLNSGWMVWDNPAPAPEGAVLEYTRELEKFLADIERR |
| Ga0265347_103882 | Ga0265347_1038821 | F013334 | MGRNKVKPEQASKVLMRMPTLRSFGEGRTCGEAIDTRTHAIRRGSGHGTSVGWFAVTGGDPSRARVAASTSRKAAAMAGVGRGSMTVEAG |
| Ga0265347_104545 | Ga0265347_1045451 | F017737 | MNARTITPGKSAPVSPAKATPVSPRFDRKFIEDHKLIERYLENKLPFKGARDLEQWCRSHPDYLNDLKLSERAHLSLKLLEASGQPQDLGEPKAPWWKSIFVLVGLAAVTFICLMAVMSL |
| Ga0265347_104697 | Ga0265347_1046971 | F047249 | MYPQRGAAQYQSVRNHGLVADASPTRLVQVMFEQILAQLAIAQG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |