Metagenome / Metatranscriptome Family F073790

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073790
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	46 residues
Representative Sequence	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFR
Number of Associated Samples	104
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.17 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.50 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (59.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (15.833 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.167 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.25% β-sheet: 0.00% Coil/Unstructured: 65.75%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00270	DEAD	9.17
PF00271	Helicase_C	4.17
PF04851	ResIII	2.50
PF03485	Arg_tRNA_synt_N	0.83
PF05036	SPOR	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	55.83 %
Unclassified	root	N/A	40.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	53.33 %
Unclassified	root	N/A	40.83 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	39.17 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2.50 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	39.17 %
Woeseiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	0.83 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.83 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	39.17 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.83 %
Woeseiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	0.83 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	39.17 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.83 %
Woeseiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	0.83 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	39.17 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.83 %
Woeseiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	0.83 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02H0YI9	Not Available	504	Open in IMG/M
3300001098\|JGI12633J13313_106343	Not Available	532	Open in IMG/M
3300001414\|JGI20174J14864_1005337	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300001471\|JGI12712J15308_10088526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	784	Open in IMG/M
3300001546\|JGI12659J15293_10002374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	5813	Open in IMG/M
3300001593\|JGI12635J15846_10128299	All Organisms → cellular organisms → Bacteria → Proteobacteria	1780	Open in IMG/M
3300001593\|JGI12635J15846_10421920	All Organisms → cellular organisms → Bacteria → Proteobacteria	801	Open in IMG/M
3300001867\|JGI12627J18819_10461320	Not Available	520	Open in IMG/M
3300002245\|JGIcombinedJ26739_101724345	Not Available	526	Open in IMG/M
3300004080\|Ga0062385_10281791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	943	Open in IMG/M
3300005994\|Ga0066789_10238763	Not Available	763	Open in IMG/M
3300006176\|Ga0070765_101189116	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300009088\|Ga0099830_11762552	Not Available	517	Open in IMG/M
3300009627\|Ga0116109_1008214	Not Available	1632	Open in IMG/M
3300009627\|Ga0116109_1099692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	617	Open in IMG/M
3300009633\|Ga0116129_1102362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	829	Open in IMG/M
3300009649\|Ga0105855_1288356	Not Available	518	Open in IMG/M
3300009661\|Ga0105858_1141894	Not Available	673	Open in IMG/M
3300010159\|Ga0099796_10211254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	791	Open in IMG/M
3300010159\|Ga0099796_10583266	Not Available	503	Open in IMG/M
3300010341\|Ga0074045_10365918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	939	Open in IMG/M
3300010343\|Ga0074044_10278030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1103	Open in IMG/M
3300011270\|Ga0137391_10954797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	699	Open in IMG/M
3300012203\|Ga0137399_10913434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	739	Open in IMG/M
3300012363\|Ga0137390_10021659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	5979	Open in IMG/M
3300012683\|Ga0137398_10641607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	736	Open in IMG/M
3300012924\|Ga0137413_10304331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1115	Open in IMG/M
3300012927\|Ga0137416_12079129	Not Available	521	Open in IMG/M
3300014165\|Ga0181523_10152981	Not Available	1356	Open in IMG/M
3300014501\|Ga0182024_10319583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2042	Open in IMG/M
3300014501\|Ga0182024_10596982	Not Available	1383	Open in IMG/M
3300015087\|Ga0167637_1055396	Not Available	512	Open in IMG/M
3300017946\|Ga0187879_10344051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	827	Open in IMG/M
3300018026\|Ga0187857_10495678	Not Available	547	Open in IMG/M
3300018034\|Ga0187863_10538773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	655	Open in IMG/M
3300018034\|Ga0187863_10681164	Not Available	580	Open in IMG/M
3300018037\|Ga0187883_10440693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	669	Open in IMG/M
3300018043\|Ga0187887_10364579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	853	Open in IMG/M
3300019887\|Ga0193729_1225502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	617	Open in IMG/M
3300019999\|Ga0193718_1033197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1144	Open in IMG/M
3300020579\|Ga0210407_10443606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1015	Open in IMG/M
3300020579\|Ga0210407_10466051	Not Available	988	Open in IMG/M
3300020579\|Ga0210407_10910253	Not Available	674	Open in IMG/M
3300020580\|Ga0210403_10048832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3384	Open in IMG/M
3300020581\|Ga0210399_11366356	Not Available	555	Open in IMG/M
3300020582\|Ga0210395_10217356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1434	Open in IMG/M
3300020583\|Ga0210401_11082196	Not Available	660	Open in IMG/M
3300021170\|Ga0210400_10568400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	935	Open in IMG/M
3300021171\|Ga0210405_10787780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	729	Open in IMG/M
3300021178\|Ga0210408_11199513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	580	Open in IMG/M
3300021402\|Ga0210385_11174534	Not Available	589	Open in IMG/M
3300021405\|Ga0210387_10298950	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300021474\|Ga0210390_10301245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1358	Open in IMG/M
3300021479\|Ga0210410_10555803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1022	Open in IMG/M
3300022720\|Ga0242672_1125425	Not Available	530	Open in IMG/M
3300023046\|Ga0233356_1021023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	761	Open in IMG/M
3300024288\|Ga0179589_10540666	Not Available	543	Open in IMG/M
3300024295\|Ga0224556_1161142	Not Available	549	Open in IMG/M
3300025359\|Ga0208322_1034107	Not Available	502	Open in IMG/M
3300025612\|Ga0208691_1138391	Not Available	549	Open in IMG/M
3300025664\|Ga0208849_1079520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	938	Open in IMG/M
3300025928\|Ga0207700_10780328	Not Available	854	Open in IMG/M
3300026222\|Ga0209862_1070260	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300026281\|Ga0209863_10110567	Not Available	807	Open in IMG/M
3300026294\|Ga0209839_10134675	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	825	Open in IMG/M
3300027031\|Ga0208986_1027414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	605	Open in IMG/M
3300027164\|Ga0208994_1043649	Not Available	667	Open in IMG/M
3300027432\|Ga0209421_1091739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	619	Open in IMG/M
3300027567\|Ga0209115_1013545	Not Available	1761	Open in IMG/M
3300027574\|Ga0208982_1052124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	814	Open in IMG/M
3300027590\|Ga0209116_1129036	Not Available	553	Open in IMG/M
3300027651\|Ga0209217_1118219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	748	Open in IMG/M
3300027678\|Ga0209011_1164738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	618	Open in IMG/M
3300027701\|Ga0209447_10142267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	659	Open in IMG/M
3300027767\|Ga0209655_10272745	Not Available	549	Open in IMG/M
3300027812\|Ga0209656_10472541	Not Available	552	Open in IMG/M
3300027829\|Ga0209773_10113193	Not Available	1123	Open in IMG/M
3300027854\|Ga0209517_10533684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	633	Open in IMG/M
3300027898\|Ga0209067_10165981	Not Available	1176	Open in IMG/M
3300027908\|Ga0209006_10059675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3413	Open in IMG/M
3300027908\|Ga0209006_10874753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	723	Open in IMG/M
3300027908\|Ga0209006_11151433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	609	Open in IMG/M
3300027965\|Ga0209062_1080787	Not Available	1424	Open in IMG/M
3300027986\|Ga0209168_10245437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	887	Open in IMG/M
3300028035\|Ga0265347_103725	Not Available	534	Open in IMG/M
3300028047\|Ga0209526_10933317	Not Available	525	Open in IMG/M
3300028565\|Ga0302145_10304428	Not Available	527	Open in IMG/M
3300028773\|Ga0302234_10074457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1509	Open in IMG/M
3300028801\|Ga0302226_10268105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	722	Open in IMG/M
3300028813\|Ga0302157_10516983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	623	Open in IMG/M
3300028879\|Ga0302229_10276553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	757	Open in IMG/M
3300029883\|Ga0311327_10691041	Not Available	604	Open in IMG/M
3300029922\|Ga0311363_11079010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	693	Open in IMG/M
3300029944\|Ga0311352_10661611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	828	Open in IMG/M
3300029951\|Ga0311371_11047101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	964	Open in IMG/M
3300029951\|Ga0311371_11088308	Not Available	938	Open in IMG/M
3300029954\|Ga0311331_10383531	Not Available	1437	Open in IMG/M
3300029954\|Ga0311331_10685556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	949	Open in IMG/M
3300029954\|Ga0311331_11194411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	642	Open in IMG/M
3300030007\|Ga0311338_10889778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	877	Open in IMG/M
3300030503\|Ga0311370_10068453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	5139	Open in IMG/M
3300030844\|Ga0075377_11008207	Not Available	505	Open in IMG/M
3300030946\|Ga0075379_11155203	Not Available	619	Open in IMG/M
3300031057\|Ga0170834_106757801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	938	Open in IMG/M
3300031231\|Ga0170824_106275659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	874	Open in IMG/M
3300031258\|Ga0302318_10014653	Not Available	2535	Open in IMG/M
3300031474\|Ga0170818_104912553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1038	Open in IMG/M
3300031525\|Ga0302326_10193955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3405	Open in IMG/M
3300031525\|Ga0302326_12777576	Not Available	606	Open in IMG/M
3300031708\|Ga0310686_100111975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	713	Open in IMG/M
3300031708\|Ga0310686_103648736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	844	Open in IMG/M
3300031715\|Ga0307476_11167781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	564	Open in IMG/M
3300031718\|Ga0307474_10106524	Not Available	2098	Open in IMG/M
3300031754\|Ga0307475_10758459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	772	Open in IMG/M
3300031823\|Ga0307478_10198728	Not Available	1612	Open in IMG/M
3300031823\|Ga0307478_11272105	Not Available	612	Open in IMG/M
3300031962\|Ga0307479_10525243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1167	Open in IMG/M
3300031962\|Ga0307479_10595387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1088	Open in IMG/M
3300033828\|Ga0334850_040796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	870	Open in IMG/M
3300034163\|Ga0370515_0172188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	926	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.00%
Aquatic	Environmental → Aquatic	15.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.50%
Peat	Environmental → Terrestrial → Peat	16.67%
Freshwater	Environmental → Aquatic → Freshwater	14.17%
Sediment	Environmental → Aquatic → Sediment	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.83%
Loam	Environmental → Terrestrial → Soil → Loam	17.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	16.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	16.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.00%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.67%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.50%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	15.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.33%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.83%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.50%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.67%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.67%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.67%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.83%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300001098	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1	Environmental	Open in IMG/M
3300001414	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015087	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6A, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025359	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10 (SPAdes)	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026222	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061 (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027574	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028035	Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE5	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028565	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030946	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300033828	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_00907440	2170459003	Grass Soil	MARFDTLNTAWMVWDGPAPTPQGAVLEYTKELEKFLAEIERRAFRMAQIALR
JGI12633J13313_1063431	3300001098	Forest Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMA
JGI20174J14864_10053371	3300001414	Arctic Peat Soil	MSGFDTLNAAWMVRDGPAPAPGEAVLEYTRELEKFLAEIERRAFRMAQVALRDPD
JGI12712J15308_100885261	3300001471	Forest Soil	MPRFATLNQAWMVWDGPAPAPEEAVLEYTRELEKFLAEIERRAFRMAQIALR
JGI12659J15293_100023741	3300001546	Forest Soil	MPGFGTLNSAWMVWDGPAPAPEDEVLEYPRELEKFLAEIERRAFRMAQVALR
JGI12635J15846_101282991	3300001593	Forest Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQVALRDPDDALD
JGI12635J15846_104219201	3300001593	Forest Soil	MGRFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEVERRAFRMAQVALRDPDDA
JGI12627J18819_104613201	3300001867	Forest Soil	MAPFDTLNAAWTVWDNPAPAPEGAVLEYSKELEKFLAEIERRAFRMAQVA
JGIcombinedJ26739_1017243452	3300002245	Forest Soil	MSRGRVMPRFANLNQAWMVWDGPAPAPEEAVLEYTRELEKFLAEI
Ga0062385_102817912	3300004080	Bog Forest Soil	MPRFDTLNAAWMVWDGPAPAPEEAVLEYTRELEKFLAEIE
Ga0066789_102387631	3300005994	Soil	MPRFDTLHTAWMVWDAPAPALRGEVLDQTRELDRFL
Ga0070765_1011891161	3300006176	Soil	MPRFDTLNPACMVWDGPAPAPGGVALEQTRELDRFLAEIERRAFRMAQ
Ga0099830_117625522	3300009088	Vadose Zone Soil	MPPFDTLNQAWMVWDGPAPAPEDAVLEYTRELEKFLAEIERR
Ga0116109_10082142	3300009627	Peatland	MPRFDTLPHAWMVWDVPAPARGGAVLDQTRELDKFLAEIERRAFRMAQVALRDPDDAM
Ga0116109_10996921	3300009627	Peatland	MSRFDTLHTTWMVWDGPTPAPEGVVLEYSRELEKFLAEMERRAFRMAQIALRDADDAL
Ga0116129_11023621	3300009633	Peatland	MEMIRMARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQVALRDPDDAL
Ga0105855_12883561	3300009649	Permafrost Soil	MPRFATLNRAWMVWDGPAPAPEEAVLEYTRELEKFLAEIERR
Ga0105858_11418941	3300009661	Permafrost Soil	MEMIRMARFDTLNTAWMVWDNPAPAPEGAVLEYTKELEKFLAET
Ga0099796_102112541	3300010159	Vadose Zone Soil	MPRFDTLNHAWMVWDGPAPAPEEAVLEYTRELEQFLADIERRAFRMAQVA
Ga0099796_105832662	3300010159	Vadose Zone Soil	MPHFDTLPDAWLAWDVPAPAAKGAVLEQTRELDKFLAEVERRAFRMAQVALRNPDDA
Ga0074045_103659182	3300010341	Bog Forest Soil	MPRFDTLNTAWMVWDDPAPAPEEAVLEQSRELDRFLAEIERRAFRMAQVALR
Ga0074044_102780302	3300010343	Bog Forest Soil	MPRFDTLNAAWMVWDDPAPAPEGAVLEQSRELDRFLAEIERR
Ga0137391_109547972	3300011270	Vadose Zone Soil	MPPFDTLNQAWMVWDGPAPAPEDAVLEYTRELEKFLAEIE
Ga0137399_109134342	3300012203	Vadose Zone Soil	MPPFDTLNQAWMVWDGPAPAPEDAVLEYTRELEKFLAEI
Ga0137390_100216595	3300012363	Vadose Zone Soil	MPPFDTLNQAWMVWDGPAPAPEDAVLEYTRELEKFLA
Ga0137398_106416071	3300012683	Vadose Zone Soil	MEMIRMARFDTLNRAWMVWDSPAPAPEGAVLEYTRELEKFLAEIERRAF
Ga0137413_103043311	3300012924	Vadose Zone Soil	MARFDTLNHAWMVWDGPAPAPEEAVLEYTRELEQFLADIERR
Ga0137416_120791292	3300012927	Vadose Zone Soil	MPRFDTLNQACMVWDGPAPAPEEAVLEYSRELEQF
Ga0181523_101529812	3300014165	Bog	MPRFDTLNTAWMVWDDPAPAPEEAVLEQSRELDRFL
Ga0182024_103195832	3300014501	Permafrost	MEMIRMARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIE
Ga0182024_105969821	3300014501	Permafrost	MSSFDTLNAAWMVWDGPAPAPEEAVLEYTRELEKF
Ga0167637_10553961	3300015087	Glacier Forefield Soil	MEMIRMARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMA
Ga0187879_103440512	3300017946	Peatland	MPGFDTLPSAWMVRDVPAPARGGAVLDQTRELDKFLAEIERRAF
Ga0187857_104956781	3300018026	Peatland	MLWGRGMPAFATLDQAWMAWDGPAPAREDAALDQTRELEKFL
Ga0187863_105387731	3300018034	Peatland	MPRFDTLPFAWMVWDLPAPARRGAILDQTRELDKFLAEIERRAFRMAQVALRDPDDAM
Ga0187863_106811642	3300018034	Peatland	MPPFDTLTQAWMVRDGPAPGPEGAAVLDYTREFEKFLAEI
Ga0187883_104406931	3300018037	Peatland	MSGFGTLTAAWMVADSPAPATRGVVLEQTRALDKFLAESERRAFRMAQVA
Ga0187887_103645792	3300018043	Peatland	MPPFDTLTQAWMVRDGPAPGPEGAAVLDYTREFEKFLAEIERRAFRMAQVALRD
Ga0193729_12255022	3300019887	Soil	MARFGTLNTAWMVWDNPAPAPGGAAVLEYTQELEKFLAEIERRAFRMAQVALRDPDDA
Ga0193718_10331972	3300019999	Soil	MARFDTLNTAWTVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQ
Ga0210407_104436062	3300020579	Soil	MARFDTLNRAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQVAL
Ga0210407_104660512	3300020579	Soil	MSTPIDTLNTAWMVWDSLAPALKGAVLEYTRELEKFLAE
Ga0210407_109102532	3300020579	Soil	MSGFDTLNAAWMVWDGPAPAPEEAVLEYTRELEKFLAEIERRAFRMAQVAL
Ga0210403_100488323	3300020580	Soil	MARFDTLNRAWMVWDSPAPAPEGAVLEYTRELEKFLAEI
Ga0210399_113663561	3300020581	Soil	MPPFDTLNQAWMVWDGPAPAPEDAVLEYTRELEKFLAEIERRAFRMAQVALRD
Ga0210395_102173562	3300020582	Soil	MSGFGTLTATWMVADSPAPATRGVVLEQTRALDKFLAEIERRAFRMAQMALR
Ga0210401_110821962	3300020583	Soil	MSGFDTLNAAWMVWDGPAPAPEEAVLEYTRELEKFLAEIERRA
Ga0210400_105684002	3300021170	Soil	MSGFDTLNAAWMVWDGPAPAPEEAVLEYTRELEKFLAEIERRAF
Ga0210405_107877801	3300021171	Soil	MSTPIDTLNTAWMVWDSLAPALKGAVLEYTRELEKFLAEIERRAFRMAQVALR
Ga0210408_111995132	3300021178	Soil	MARFDTLNRAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAF
Ga0210385_111745341	3300021402	Soil	MSGFDTLSSAWMVWDYPAPAPGGVVLEQTRELDKFLGEIERRA
Ga0210387_102989501	3300021405	Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFL
Ga0210390_103012452	3300021474	Soil	MSGFDTLSSAWMVWDDPAPAPGGVVLEQTRELDKFLGEIERRAFRMAQVALRDPDDAMDA
Ga0210410_105558031	3300021479	Soil	MARFDTLNRAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQVALRDPDDALD
Ga0242672_11254252	3300022720	Soil	MARFDTLDTAWMVWDSPAPAPEGAVLDYTRELEKFLAEIERRAFRMAQV
Ga0233356_10210232	3300023046	Soil	MPRFDTLNDAWMVWDGPAPAPEEAVLEYTQELERFLAEVER
Ga0179589_105406662	3300024288	Vadose Zone Soil	MPHFDTLPEAWLAWDVPAPAAKGAVLEQTRELDKFLAEVERR
Ga0224556_11611421	3300024295	Soil	MPRFATLNQAWMVWDGPAPAPEEAVLEYTRELEKFLAEIE
Ga0208322_10341072	3300025359	Peatland	MSRFDTLNAAWMVWDGPAPAREEAVLEYTRELEKFLAEIERRAF
Ga0208691_11383911	3300025612	Peatland	MSGFDTLPSAWMVWDGPAPAPGGAVLEQTRELDKFLAEIERRAFRMAQV
Ga0208849_10795201	3300025664	Arctic Peat Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQVALRDPDDAL
Ga0207700_107803282	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPRFGTLNSAWMVWDGPAPAPEEAVLEYPRELEKFLAEIERRA
Ga0209862_10702601	3300026222	Permafrost Soil	MARFGTLNTAWMVWDNPAPAPEGAVLEYTKELEKFLAETERRAFRIAQ
Ga0209863_101105672	3300026281	Prmafrost Soil	MPRFANLNQAWMVWDGPAPAREEAVLEYTRELEKFLAEIERRAFRMA
Ga0209839_101346752	3300026294	Soil	MARFDTLNTAWMVWDGPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQIALRDP
Ga0208986_10274142	3300027031	Forest Soil	MARFGTLNTAWKVWDNPAPAPEGAVLEYTKELEKFLAEIERRAFR
Ga0208994_10436492	3300027164	Forest Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEVERRAFRMAQVALR
Ga0209421_10917391	3300027432	Forest Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELERFLAEIERRAFRMAQVALRD
Ga0209115_10135451	3300027567	Forest Soil	MPRFDTLNSAWMVWDGPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQVALRDPDDALD
Ga0208982_10521242	3300027574	Forest Soil	MARFGTLNTAWMVWDNPAPAPEGAVLEYTKELEKFLAEIERRAFRMAQV
Ga0209116_11290362	3300027590	Forest Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQVA
Ga0209217_11182192	3300027651	Forest Soil	MPRFDTLNQACMVWDGPAPAPEEAVLEYTRELEQFLAEI
Ga0209011_11647382	3300027678	Forest Soil	MPRFDTLHPAWMVWDGPAPAPEEAVLEHTRELEKFLAEIERRAFRMAQVA
Ga0209447_101422672	3300027701	Bog Forest Soil	MARFDTLISAWMVWDNPAPAPEGAVLEYTKELEKFLAEIERRAFRMAQV
Ga0209655_102727452	3300027767	Bog Forest Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFR
Ga0209656_104725411	3300027812	Bog Forest Soil	MSRFATLTHAWMAWDGPAPAPEDAVLDQTRELDKFLAEVERRAFRIAQVS
Ga0209773_101131931	3300027829	Bog Forest Soil	VSTPVDTLNTAWMVWDSLAPALEGAVLEYTRELEK
Ga0209517_105336842	3300027854	Peatlands Soil	MPRFATLTHAWMAWEGPAPAPEDAVLDQTRELDKFLAEVERRAFRIAQVSLRD
Ga0209067_101659812	3300027898	Watersheds	MSSPVDTLNTAWMVWDSLAPAVKGAVLEYTKELERFLAEIE
Ga0209006_100596753	3300027908	Forest Soil	MPRFATLNQAWMVWDGPAPAPEEAVLEYTRELEKFLAE
Ga0209006_108747532	3300027908	Forest Soil	MSGFDTLNAAWMVWDGPAPAPEEAVLEHTRELEKFLAEIERRPFR
Ga0209006_111514331	3300027908	Forest Soil	MPRFATLNQAWMVWDGPAPAPEEAVLEYTRELEKFLAEIERRA
Ga0209062_10807871	3300027965	Surface Soil	MMASFDTLTSAWMVWDEPAPAPKGAVLEQTRELNQFLAEIERRAFRMAQVALRDA
Ga0209168_102454372	3300027986	Surface Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTKELEKFLAEIERRAFRMAQ
Ga0265347_1037252	3300028035	Plant Litter	MARFDTLNSGWMVWDNPAPAPEGAVLEYTRELEKFLADIERR
Ga0209526_109333171	3300028047	Forest Soil	MPRFDTLHPAWMVWDGPAPAPEEAVLEHTRELEKFLAEIERRAFRM
Ga0302145_103044282	3300028565	Bog	MAQFATLSHAWMAWDSPARAPKDVVLDQTRELNEFLAGIER
Ga0302234_100744571	3300028773	Palsa	MPRFDTLNTAWMVWDDPAPAPQGAVLEQTRELDKFLAE
Ga0302226_102681052	3300028801	Palsa	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIER
Ga0302157_105169831	3300028813	Bog	MPRFDTLHTAWMAWDLPAPAPEGVVLEQTKELDKFLAE
Ga0302229_102765531	3300028879	Palsa	MPGFGTLTADWMVADSSAPATRGVVLEQTRALDKFLAEVERRAFRMAQMAL
Ga0311327_106910411	3300029883	Bog	MAQFATLSHAWMAWDSPARAPKDVVLDQTRELNEFLAGIERRAFRMAQVK
Ga0311363_110790101	3300029922	Fen	MSGFDTLPSAWMVWDDPAPAPRGAVLEQTRELDKFLSE
Ga0311352_106616112	3300029944	Palsa	MPGFGTLTADWMVADSSAPATRGVVLEQTRALDKFLAEVERRAFRMAQMALRDPD
Ga0311371_110471011	3300029951	Palsa	MSGFDTLTAAWTVWDGPAPAPRGVVLEQTRELDKFLAEIERRAFRM
Ga0311371_110883081	3300029951	Palsa	MSGFGTLTAAWMVADGSAPATRGVVLEQTRALDKFLAEIERRAFRMAQVALRDPDD
Ga0311331_103835312	3300029954	Bog	MPRFDTLPHAWMVWDVPAPARGGAVLDQTRELDKFLAEIERRAFRMAQVAL
Ga0311331_106855562	3300029954	Bog	MARFDTLPAAWTVWDVPAPAGRGTVLDHARELDKFLAEVE
Ga0311331_111944112	3300029954	Bog	MPRFDTLHTAWMAWDVPAPAPEGVALEQTKELDKFLAEVERRAF
Ga0311338_108897782	3300030007	Palsa	MPRFDTLNSAWMVWDGPAPAPEEAVLEYTQELEKFLA
Ga0311370_100684534	3300030503	Palsa	MPPFDTLNPAWMVWDGPAPAPEEAVLEYTRELEKFLAEVERRAFRMAQVAL
Ga0075377_110082071	3300030844	Soil	MPRFDTLNPAWMVRDGPAPAPEEAVLEYTRELEKFL
Ga0075379_111552032	3300030946	Soil	MPRFDTLNRAWMVWDGPAPAPEEAVLEYPRELEKFLAEIERRAFRMAQVALRDPD
Ga0170834_1067578012	3300031057	Forest Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERR
Ga0170824_1062756591	3300031231	Forest Soil	MARFGTLNSAWTVWDNPAPAPKGAVLEYTKELEKFLAEIERRAFRMAQV
Ga0302318_100146532	3300031258	Bog	MPRFDTLPLAWMVWDLPAPARRGAVLDQTRELDKFLAEIERRAFRMAQVALR
Ga0170818_1049125532	3300031474	Forest Soil	MPRFDTLNPAWMVRDGPAPAPEEAVLEYTRELEKFLA
Ga0302326_101939553	3300031525	Palsa	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEIERRAFRMAQ
Ga0302326_127775762	3300031525	Palsa	MPRFDTLTRAGMVWDDPAPAAEEAVLEYTRELEKFLAEIERRAF
Ga0310686_1001119752	3300031708	Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLAEVERRAFRM
Ga0310686_1036487361	3300031708	Soil	MSGFGTLTAAWMVADSPAPATRGVVLEQTRALDKFLAEIERRAFRM
Ga0307476_111677811	3300031715	Hardwood Forest Soil	MPPFDTLNSAWMVWDGPAPAPEEAVLEYTRELEKFLA
Ga0307474_101065241	3300031718	Hardwood Forest Soil	MARFDTLNTAWTVWDNPAPAPEGAVLEYTRELEKFLAEIERRAF
Ga0307475_107584592	3300031754	Hardwood Forest Soil	MPPFDTLSQAWMVWDGPAPAPEDAVLEYTRELEKFLAEIERRAFR
Ga0307478_101987281	3300031823	Hardwood Forest Soil	MPPFDTLNSAWMVWDGPAPAPEEAVLEYTRELEKFLAEIERRAFRMAQVALRDPDDAM
Ga0307478_112721052	3300031823	Hardwood Forest Soil	MARFDTLNTAWMVWDNPAPAPEGAVLEYTRELEKFLA
Ga0307479_105252432	3300031962	Hardwood Forest Soil	MPRFDTLAGAWMVWDVPAPAPGGAVLDQTQELDRFLSEIERRAFRMA
Ga0307479_105953871	3300031962	Hardwood Forest Soil	MPPFDTLNQAWMVWDGPAPAPEDAVLEYTRELEKFLAE
Ga0334850_040796_1_168	3300033828	Soil	MSGFGTLTAAWMVADSPAPATRGVVLEQTRALDKFLAEVERRAFRMAQMALRDPDD
Ga0370515_0172188_810_926	3300034163	Untreated Peat Soil	MARFGTLNTAWMVWDNPAPAAEGAVLEYTRELEKFLAEI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073790

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences