| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028014 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0306252 | Ga0265345 |
| Sample Name | Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 35128353 |
| Sequencing Scaffolds | 40 |
| Novel Protein Genes | 41 |
| Associated Families | 39 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 20 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 3 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula → Russula griseocarnosa | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → unclassified Rhodocyclaceae → Rhodocyclaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → valley → plant litter |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Norway: Oslo | |||||||
| Coordinates | Lat. (o) | 59.9982 | Long. (o) | 10.7894 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000247 | Metagenome | 1464 | Y |
| F000362 | Metagenome / Metatranscriptome | 1231 | Y |
| F001234 | Metagenome / Metatranscriptome | 741 | Y |
| F004075 | Metagenome / Metatranscriptome | 454 | Y |
| F004180 | Metagenome / Metatranscriptome | 449 | Y |
| F005481 | Metagenome / Metatranscriptome | 399 | Y |
| F008253 | Metagenome / Metatranscriptome | 336 | Y |
| F009277 | Metagenome / Metatranscriptome | 320 | Y |
| F011235 | Metagenome / Metatranscriptome | 293 | Y |
| F011420 | Metagenome / Metatranscriptome | 291 | Y |
| F013439 | Metagenome / Metatranscriptome | 271 | Y |
| F014995 | Metagenome / Metatranscriptome | 258 | Y |
| F015179 | Metagenome / Metatranscriptome | 256 | Y |
| F017942 | Metagenome / Metatranscriptome | 237 | Y |
| F018720 | Metagenome / Metatranscriptome | 233 | Y |
| F026119 | Metagenome / Metatranscriptome | 199 | Y |
| F026549 | Metagenome / Metatranscriptome | 197 | Y |
| F034304 | Metagenome / Metatranscriptome | 175 | Y |
| F035385 | Metagenome / Metatranscriptome | 172 | Y |
| F039720 | Metagenome / Metatranscriptome | 163 | Y |
| F045220 | Metagenome / Metatranscriptome | 153 | Y |
| F050588 | Metagenome / Metatranscriptome | 145 | Y |
| F051418 | Metagenome / Metatranscriptome | 144 | Y |
| F053416 | Metagenome / Metatranscriptome | 141 | Y |
| F061340 | Metagenome / Metatranscriptome | 132 | Y |
| F064945 | Metagenome / Metatranscriptome | 128 | Y |
| F065970 | Metagenome / Metatranscriptome | 127 | Y |
| F071696 | Metagenome / Metatranscriptome | 122 | Y |
| F075457 | Metagenome / Metatranscriptome | 119 | N |
| F079466 | Metagenome / Metatranscriptome | 115 | Y |
| F080468 | Metagenome / Metatranscriptome | 115 | Y |
| F082248 | Metagenome / Metatranscriptome | 113 | Y |
| F084483 | Metagenome | 112 | Y |
| F085409 | Metagenome / Metatranscriptome | 111 | N |
| F085915 | Metagenome / Metatranscriptome | 111 | Y |
| F087519 | Metagenome / Metatranscriptome | 110 | Y |
| F090980 | Metagenome / Metatranscriptome | 108 | Y |
| F098443 | Metagenome | 103 | Y |
| F099461 | Metagenome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0265345_100469 | Not Available | 1164 | Open in IMG/M |
| Ga0265345_100600 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1093 | Open in IMG/M |
| Ga0265345_100864 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 991 | Open in IMG/M |
| Ga0265345_100981 | Not Available | 949 | Open in IMG/M |
| Ga0265345_101023 | Not Available | 939 | Open in IMG/M |
| Ga0265345_101275 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 890 | Open in IMG/M |
| Ga0265345_101524 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula → Russula griseocarnosa | 842 | Open in IMG/M |
| Ga0265345_101752 | All Organisms → cellular organisms → Bacteria | 809 | Open in IMG/M |
| Ga0265345_102070 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 773 | Open in IMG/M |
| Ga0265345_102097 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 770 | Open in IMG/M |
| Ga0265345_102472 | Not Available | 735 | Open in IMG/M |
| Ga0265345_102658 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 720 | Open in IMG/M |
| Ga0265345_102862 | Not Available | 705 | Open in IMG/M |
| Ga0265345_103045 | Not Available | 692 | Open in IMG/M |
| Ga0265345_103215 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → unclassified Rhodocyclaceae → Rhodocyclaceae bacterium | 681 | Open in IMG/M |
| Ga0265345_103410 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 671 | Open in IMG/M |
| Ga0265345_103434 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 669 | Open in IMG/M |
| Ga0265345_103656 | Not Available | 657 | Open in IMG/M |
| Ga0265345_103761 | All Organisms → cellular organisms → Eukaryota | 652 | Open in IMG/M |
| Ga0265345_103917 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 644 | Open in IMG/M |
| Ga0265345_104049 | All Organisms → cellular organisms → Bacteria | 638 | Open in IMG/M |
| Ga0265345_104366 | Not Available | 625 | Open in IMG/M |
| Ga0265345_104552 | Not Available | 617 | Open in IMG/M |
| Ga0265345_104729 | Not Available | 611 | Open in IMG/M |
| Ga0265345_104883 | Not Available | 605 | Open in IMG/M |
| Ga0265345_105203 | Not Available | 595 | Open in IMG/M |
| Ga0265345_105430 | Not Available | 588 | Open in IMG/M |
| Ga0265345_105652 | Not Available | 580 | Open in IMG/M |
| Ga0265345_105850 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 574 | Open in IMG/M |
| Ga0265345_106667 | Not Available | 553 | Open in IMG/M |
| Ga0265345_106763 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 550 | Open in IMG/M |
| Ga0265345_106923 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 546 | Open in IMG/M |
| Ga0265345_107033 | All Organisms → cellular organisms → Eukaryota | 544 | Open in IMG/M |
| Ga0265345_107354 | Not Available | 536 | Open in IMG/M |
| Ga0265345_107789 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 527 | Open in IMG/M |
| Ga0265345_108009 | Not Available | 523 | Open in IMG/M |
| Ga0265345_108319 | Not Available | 517 | Open in IMG/M |
| Ga0265345_108619 | Not Available | 512 | Open in IMG/M |
| Ga0265345_108647 | Not Available | 512 | Open in IMG/M |
| Ga0265345_109045 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0265345_100469 | Ga0265345_1004692 | F075457 | MNHATKAIAHEIKVRRVAYFYSAAERRSRGALWPSFAP |
| Ga0265345_100600 | Ga0265345_1006003 | F009277 | MAVNKPRNRTLIFRLTQDEYDCLQAASSGARSLSDFARERLLGAVTRPPIDQQLTELKVMIAELLEKD |
| Ga0265345_100864 | Ga0265345_1008641 | F015179 | MKSRNPFWVLAVIGAALGGCAATPLVQPVAQDAYRVNVIGARYETQTDANLRALNIADQYCDQMGKHVMFRQSTESSEHAWSPKQEDLTFVCMDAKDPAYMRAAVEHVPPVVAKQE |
| Ga0265345_100981 | Ga0265345_1009812 | F090980 | MRKLMWVTMLAVVGCASQPTGAPTPPSSPAAAVPTADIEAQRANQARNLNLKVVNKDGQQLFCRSNYVTTSRIQRDTTCYTADQLDKMEAQQQHEIDQLNLRPAAPAKNPFN |
| Ga0265345_101023 | Ga0265345_1010231 | F000247 | VRTNIIYIALSYKRTLYIEVAYTNCLISSSNISIGKTLVPSSGVLFTYPSAGKKLYYNSSLSLNRSIDPTSIGL |
| Ga0265345_101275 | Ga0265345_1012752 | F099461 | MTVLSVVQDVCSATGVVLPTSIFSGITGNRTMQEMLALAN |
| Ga0265345_101524 | Ga0265345_1015241 | F061340 | MNITTNQITFLRDIPSDIKVDMTSGXRHHYFDGSISELSTFIKSIEDDKIYLLIPLFASSKSLKNATLNLSEPFLVDNKSNPALIIKFILYQXHSSGFVVREGIKISFSFKFKRVXISHK |
| Ga0265345_101752 | Ga0265345_1017521 | F064945 | MDMDHKITASRADLHDSAQMAQFLAPIPNAGNLESLLMERKAVSTRSYDDDTMIARFVRSDGTAVVCYAVEEVTIDEGEMIAAQCELLDFWNLENFARAVHIALDPEI |
| Ga0265345_102070 | Ga0265345_1020701 | F026549 | MFRSIMLRFVLPVALASCVVAYFGLPYIQRLLAEWFRSDVELRAQLVMHSVEEPITDLVENGSEARLRAYL |
| Ga0265345_102097 | Ga0265345_1020971 | F008253 | MSRQIETTIADAAARNLSVSATIELLADVELESRNGHAVERRFKLSRLQTQASIDAFHF |
| Ga0265345_102472 | Ga0265345_1024722 | F000362 | VHDLMTTPPSVSGDASIAVAQRQWGGDTPLARAAHLRWGALNRAFGDARVSPWTMPQRRDQIHVPAALIAAAGVAKLTMAADEVVFDIPTLLDATLQLCEPVGHA |
| Ga0265345_102658 | Ga0265345_1026582 | F084483 | THGSPALISAYLRAAAEQSRFIALLWLLCALEGWQTGRVIRSYGDYSDGSFLRAFCDRFLLKNVSEWQILFTTLSLRSDDPRTVVEIDALSTLDVLYRGRLVNWFTDQDGKLAGIFLINAQRFRRDQIARDRANNIFKESEKYWAPVPGSNLYLAASTLANYNIRYVEPSDLEFVEQELGTGIVITPLPPEDTADDLSSF |
| Ga0265345_102862 | Ga0265345_1028621 | F079466 | LEIAVPAPDRELAKAYWEDFGFVGMDESADLLPHIACTSDFIDLGLYHPADLRRATLRFEVDDVGGTLAHLADKGIVPNGELPPGLRSVPAAVLLAPEGTPILLTSSATP |
| Ga0265345_103045 | Ga0265345_1030452 | F051418 | EMKVRPRERGQLLILLGMWLFFGGSAASALLVYDRPAKEVKKAVKRAIADADRRDSILSYLSAWQSIQELQDGNVSMYREELLDKLRHKDAKLAEMEATMANLDVTLAEMDRNFLKLRFHVKEQVTSAEWAEIVARR |
| Ga0265345_103215 | Ga0265345_1032151 | F085915 | IPIPFLDIFAKAGAARLSTNVTDFVQQPCVAGGPCPYFVPTNRHQVIDTRFAYGVGVQSKIPFGLLVRGEYQRISSQYGDPDALLVSALWQF |
| Ga0265345_103410 | Ga0265345_1034102 | F080468 | IDRNLSGGDPPGPQVAIAASGEGTPFRLILLREATQAKAVVNGDALGKVSSEASNKVEKR |
| Ga0265345_103434 | Ga0265345_1034341 | F065970 | ANRSTSGCASPAPPGYPGAQNTRVASEAANSVLISLGYHAPAVPAPAKTVVLFSRILQLRVWIAAAFLLLTAAGIYGALQVADDPAIERLVVAGDPVARATADFDRLFPEGEQALLMLEAPDPLALPVVRAADRLERELAKIPRVQAHSLLDLYRRAGSVTDMSPEEASRLRAFATGTTLFRRAGLLGDDYLGVAIELRVKSPAERNQALAAIDALVLPLEST |
| Ga0265345_103656 | Ga0265345_1036562 | F035385 | LIRVGDHVVVSGEDAEAVVTAVHPDSQVEIEFLHASEGGPRRRRYAAEALEKISRTS |
| Ga0265345_103761 | Ga0265345_1037611 | F017942 | VDSQYRVVDSIYIVVDYLYRVVDSLCRVMDSLYRVVDSLYRVVDSLYRVVVSLYRVVDSLYRVVDSLCIVVDYLYRVFDSFYRIVDSLHRMVDSLYRVVDSLYRVVNSIYIVVYYLYRVVDSLCRVLDCLYIVVDGLPL |
| Ga0265345_103917 | Ga0265345_1039171 | F013439 | SRREVFLRTADMKTKTIPKTPNREQMERNTLRLLCSVLVKPGTRLEICRLLHSYNFLDPLRRTVFEEVQAAGVLSSKQLRASLPQRMISRGFLDFNLEKLLAPKLASEAEIEQLFESTLLLLKLGGADEPTFFASEDDVEN |
| Ga0265345_104049 | Ga0265345_1040491 | F005481 | VTDGDRIFLGLLCAGAFCVLVILIDGWFLRPRRDPGATSAEEPLLPKLSGYALIGLSLAMLWRLFRYEAVDFSLMLVAVGALSGVIWAAD |
| Ga0265345_104366 | Ga0265345_1043662 | F071696 | MKMRASELSSAAILSDGSLSIGFRSSTDTHTIELARKAQEQLLPALLASEPANLQKFFTAADVQTTSLSEGVLMTFPIEGRIAIRILVSESTRQKLLTLLTGPGATPA |
| Ga0265345_104552 | Ga0265345_1045521 | F011235 | MSDRQETVLAVHGNADGYWYIGAGRSIAEGPYRNPDQLLSVASDLLAAEPHWRIDVFDAAGNKIISYSSDELKAGDLHPLRWRRQWDRLAPSVPH |
| Ga0265345_104729 | Ga0265345_1047292 | F082248 | MFRDPVRNAPLVSDISDVELRLKVGRADSMLFLESNLRLPHLRVS |
| Ga0265345_104883 | Ga0265345_1048831 | F018720 | MKDSSSARVGMAAFLAILTVSAGTMLWLFWRFPVATALITLGVLAALGVLARLARSVDVDMQDLDRT |
| Ga0265345_105203 | Ga0265345_1052031 | F039720 | MNLNNAAAFSREVENCATRYVLSDELTRLCTALAYSKGASALAFTELLHVPAERVWVEWTEAPWRNELARYGFKHPVDSACSGRRGIFIQSNREGRSGLMRTFWATGESELEVLSSSMEAYFDFNTREGDEPASL |
| Ga0265345_105430 | Ga0265345_1054302 | F011420 | VDILLRRFLRAGLRRGLAGHWYWFLLAGSTFILRRVLNDRTGRVSSVTLVPGEQILISVRDAKAPAPAEA |
| Ga0265345_105652 | Ga0265345_1056521 | F026119 | MLQLPLLSLTRTEEKLVPVDAPVQAELVSLMAHILVTVFQTEARRTDERASIQSQDH |
| Ga0265345_105850 | Ga0265345_1058502 | F045220 | QGRALVLNNLLKDSNGELLLTVNSTGMSAGIYTVRIEALPPRGIPIPIGWLLIEVE |
| Ga0265345_106667 | Ga0265345_1066672 | F034304 | MSGINGDKARFHRERRQRIAKRNRNRELLKSLIEQPKPAAAGSGAKAKAVAE |
| Ga0265345_106763 | Ga0265345_1067631 | F004180 | YQLALKTGYPRVQQKRWRAILPWVVVRLAYYKGLDAKFRLFRYSHWIPAQWREYHELAEFTRMRSWQREQLVLGGGSFSKPGVTFEQEYIKTLMLMRLDSGNFTPDQVEWVARQLEDWTPSLTLTAVASEHSGFLVDFTGGQGLRRRDSAYMGGRVQYLDTGPVYARVVERMRYLPPRDDDVA |
| Ga0265345_106923 | Ga0265345_1069231 | F050588 | METVIDLLRAIQLNMLDVVIAGLFIFSIGYLIGIKKVKKLTHEIYGLQNDILDLNEELLYGIHENGSDTPVIGLKHDRLNQTKFAK |
| Ga0265345_107033 | Ga0265345_1070331 | F017942 | VDSLYRAVNSVYKVVDSPYRVVDSIYRVVDSLYRIVDSLYRVVYSISMVVDYLYRVVNSLYRVVDSLHRVVDSFYREVDSLYKVVDSLYRVMDSLYRVVDSIYIVVDYLYRVVDYLYRVVDSLYIVVDSFYREVDSLYRVVD |
| Ga0265345_107342 | Ga0265345_1073421 | F004075 | DPRKDYMVEKEAIPQQPVISIRISEALRSRLETLRKIISLKSGQNVSTSEAAKQLLESARDDRLELVNLLSEPTDTLLRIRGKADSGLSLSQAEWTMVAHYCAVGAESFVNTAQGQISYETLAEILEAFLAAYAIARRPKKSPLDFVYLMSLPGDKQVEAKAEDVGTDDVHRVITRTI |
| Ga0265345_107354 | Ga0265345_1073542 | F053416 | MPTPSCQSRPKASRAGLLLLALLLFRAYIPVGFMPASGVPFALQLCPAGTEMPAHLHHHAGGHGDFESCPFGSAPGAAPISQHIDFQTPGPAPSLRMASPKTPLLVHRSQSTHQPRGPPSLA |
| Ga0265345_107789 | Ga0265345_1077891 | F001234 | PRPLPVLKTRRMDDAPIMRKYTDFGEMKADEYRYWQSRPAHERLDAVEEMIQTAYELKGWKIEPDVPRLQRPFVRLPVPWR |
| Ga0265345_108009 | Ga0265345_1080091 | F098443 | VLASDEDGGALDALKFSLASDIVELVVLTSDDAFLQTLRE |
| Ga0265345_108319 | Ga0265345_1083191 | F087519 | MTERLLKFPVRCPICSTEWTCALSVTQIKESLDQGTPIRAYAECHDWHWDLKEDERAILAAKIRA |
| Ga0265345_108619 | Ga0265345_1086191 | F085409 | MRYDVSNFDRPMDQCRNFPVFDTIQQKLEYANQCRASYIKLQLEYGKLNIRHSGFQDSGH |
| Ga0265345_108647 | Ga0265345_1086471 | F014995 | LKPQTPASFLPGGMLGIQLGGSWKKSKQNPSLRELTCQTVADASDFDEVCFFRASAASRVGGAQIHDGFIVRKDDHVVLVGTGISIKDADDPVAESVVHVLQLQINSAFQHTGDNVLFVTLPARHLSAEELAGYSKTAPVLLVQLEAKSNELAVLYGYLAPVNEFGALTA |
| Ga0265345_109045 | Ga0265345_1090451 | F075457 | MNRAIKAIAHEIKIRRVAYFYAAAEPRSRGALWPSFAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |