Sample 3300027428

Basic Information
IMG/M Taxon OID	3300027428 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072057 \| Ga0207617
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-11 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0095510 | Gp0072057 | Ga0207617

Sample Name

Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-11 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	26008736
Sequencing Scaffolds	30
Novel Protein Genes	31
Associated Families	31

Dataset Contents

Total Genome Size

26008736

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1
Not Available	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Archaea	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → agricultural field → agricultural soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

Wisconsin, United States

Coordinates

Lat. (^o)

43.3

Long. (^o)

-89.38

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F000569	Metagenome / Metatranscriptome	1018	Y
F003167	Metagenome / Metatranscriptome	504	Y
F006430	Metagenome / Metatranscriptome	373	Y
F011965	Metagenome	285	Y
F012159	Metagenome	283	N
F014274	Metagenome	264	Y
F019889	Metagenome / Metatranscriptome	227	Y
F020931	Metagenome / Metatranscriptome	221	Y
F022740	Metagenome / Metatranscriptome	213	Y
F023901	Metagenome / Metatranscriptome	208	N
F024176	Metagenome / Metatranscriptome	207	Y
F025530	Metagenome	201	Y
F029216	Metagenome / Metatranscriptome	189	Y
F032670	Metagenome / Metatranscriptome	179	N
F034172	Metagenome / Metatranscriptome	175	Y
F035397	Metagenome / Metatranscriptome	172	Y
F041750	Metagenome / Metatranscriptome	159	Y
F049092	Metagenome	147	N
F049708	Metagenome / Metatranscriptome	146	Y
F066928	Metagenome / Metatranscriptome	126	Y
F068543	Metagenome	124	Y
F070698	Metagenome / Metatranscriptome	123	N
F080668	Metagenome	115	Y
F084203	Metagenome / Metatranscriptome	112	N
F084464	Metagenome / Metatranscriptome	112	N
F097297	Metagenome / Metatranscriptome	104	Y
F098176	Metagenome	104	N
F100606	Metagenome	102	N
F103539	Metagenome	101	N
F105676	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207617_100022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2937	Open in IMG/M
Ga0207617_100261	Not Available	1679	Open in IMG/M
Ga0207617_100519	Not Available	1366	Open in IMG/M
Ga0207617_100650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1270	Open in IMG/M
Ga0207617_100711	All Organisms → cellular organisms → Archaea	1238	Open in IMG/M
Ga0207617_100767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1211	Open in IMG/M
Ga0207617_100946	Not Available	1114	Open in IMG/M
Ga0207617_101076	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
Ga0207617_101107	Not Available	1046	Open in IMG/M
Ga0207617_101250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	993	Open in IMG/M
Ga0207617_101370	Not Available	957	Open in IMG/M
Ga0207617_101377	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
Ga0207617_101528	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	913	Open in IMG/M
Ga0207617_101855	All Organisms → cellular organisms → Archaea	842	Open in IMG/M
Ga0207617_102088	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	798	Open in IMG/M
Ga0207617_102138	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
Ga0207617_102144	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
Ga0207617_102246	All Organisms → cellular organisms → Archaea	772	Open in IMG/M
Ga0207617_102402	Not Available	751	Open in IMG/M
Ga0207617_102688	Not Available	713	Open in IMG/M
Ga0207617_102797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
Ga0207617_103002	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
Ga0207617_103203	All Organisms → cellular organisms → Archaea	661	Open in IMG/M
Ga0207617_103504	Not Available	634	Open in IMG/M
Ga0207617_103871	Not Available	606	Open in IMG/M
Ga0207617_103912	Not Available	603	Open in IMG/M
Ga0207617_104713	Not Available	557	Open in IMG/M
Ga0207617_104793	All Organisms → cellular organisms → Archaea	553	Open in IMG/M
Ga0207617_105366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
Ga0207617_105456	Not Available	525	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207617_100022	Ga0207617_1000222	F034172	MRTIFVFLVAGLIVLLGGASYAADVRLDHKRAHARGAGTFDQRLRVVEQRPYCGNCEAPFGRTHSANVVRLRFINWPFWQESCSVGACGVYYPVMRSCVFWGLGCT
Ga0207617_100261	Ga0207617_1002611	F049092	MKFIEPAFDTGGDLWRPPLNVPDSDAHALNEKFARQSAELRLRLTEVLELHNVQQRQANELQDRYDDIDRLSQTVSALQEAVNQYKMGTAAAEDKIILLESEKAVLQAQLDVALEESKTLADRVHAAEAASDRREATVALSIKQIEFLNTELTAAAAERF
Ga0207617_100519	Ga0207617_1005192	F049708	ILPRPIEESWELVRDILWAGMTIISIGLLEVMSPLATPFASASGLRRGDVAEILLAVILVAAAVYSALRLRRKDLTPRWRGTHTFFLLLALTLVAMVRFTLYSWSHFA
Ga0207617_100650	Ga0207617_1006501	F025530	MSDMQISTGTMMRISEAARDNIAAGIWFAVLAGSLFLTAHGQSILMTAGLMLELTAAYSTFVLCGKGARSLFVHAVPYAFALAGAVFLCLAPDFPNAVQASLVFLGVTALMHGSVVYSALKNPRETEDPVYASAT
Ga0207617_100711	Ga0207617_1007113	F100606	MLRNHSNYMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANEEL
Ga0207617_100767	Ga0207617_1007671	F024176	MTRSHVFAIAAGLLLAVSGPSFAAKRMSDTKSGLKSQSRAEESNGLANSGSAIRPYGRDPYLYSRDDP
Ga0207617_100946	Ga0207617_1009461	F105676	LMLERLDGRGDLIAIGNPQDRKGAARQSPWGAQRLYVDDAHWQETVTMLARDADRIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVDRVLALRTTSTDQLILMVCDKPERDAYLVAARLAFEGRAGNLTMSAKGR
Ga0207617_101076	Ga0207617_1010761	F080668	DERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF
Ga0207617_101107	Ga0207617_1011072	F014274	MNVLTCEKAQPFDCTAPSVNVTIGVLQAAVAVADPSAAVISEAEGLQPRVTRAGVIIIVGGLGALSQVTVLVIVAELPQPSTAVNILVCEDEQLDVDTAPSVNVTVAVLQPSVAVADPRAASISEANGLQPIVTGE
Ga0207617_101250	Ga0207617_1012501	F097297	HAKSSRQPPLKERKLTKSDASAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLARLEPQPATVDDNVTRPEGEDDDSAAKRAILHEWENWSALHSDELGDPKVAEYFFRHLQTKKPQLLNFGFQDKLMMVRRCLVD
Ga0207617_101370	Ga0207617_1013701	F103539	RPRNRGSEILMSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207617_101377	Ga0207617_1013771	F000268	MLMRVIAVMLLLSAGIAAEAMSYSFVCKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATNGHGGSSGVTFGFDKNGRMTFPDSFDR
Ga0207617_101528	Ga0207617_1015281	F011965	YFRTWNANSTALKLHGPWGTSYWLEFNPSTFKVGDGSSRPTLHPLSFDVKWEWSAVDPNIIYFINGTQLAKYNKSTHVVTNLGGRGVSLKYHVVVVGLDAWVCAAGPGTQNTYRQIFCLNPRNPSQTKFIDILKRTINGVYQSDPNWPTSAPYQTIGIHAMYGSATGTWLDVGFHRASWGAGGDSVFNLSTNKWSLLKANRYSSGHSSIGTRFVNGSGSINGMYSGGACLRNPSNLMDATRYTFIMQPPSTATGWHDGEHSSWFNASTNPQAPVLFSRYNISTPPSPVPWYGEIIAAATDGSN
Ga0207617_101733	Ga0207617_1017331	F041750	KWKTAFRAAWTGYDRNMLKAPTDADIVRLRQFLRRLESDAKEAVEDAELCQHEIDRLKSEIAYLEAARSRAFLAQIGIDFGAAASGRRNYSAERGKPS
Ga0207617_101855	Ga0207617_1018551	F032670	CKEEIIKEKRREHLRYHKLDDTLVEWIIETDDDLISSYEKH
Ga0207617_102088	Ga0207617_1020882	F035397	ETNESGCLFCFLDRLNDLVEIRPLAGLEFGMEQFAIGANFEGAAARRNQRKRCDALAELENFGRQTDGLRRVVSNDAVFD
Ga0207617_102138	Ga0207617_1021381	F022740	AAGAGSRNVAFYHRRRSQILAARSNELGGLVSFVSVGGQPVNVSRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIKKLGWKIVQLKPER
Ga0207617_102144	Ga0207617_1021441	F066928	MSPADRYRALAAHLRTRAAREQSPVLRTQWAKLAQCYVRLAGQADLNSRADIVYEFDRSARRGDVGGGPA
Ga0207617_102246	Ga0207617_1022462	F023901	GGVPLDPKKFGGYEFAINTKGWDAKREPTHNCHDQHKSGLIPTNLENDKAVRLRQTVKDESGKVHQIGEIDYMDGNGFHKVMDIFDSSPNPWMVDRNLYETKSYFWIRNNGSGYITVRDVSLEILS
Ga0207617_102402	Ga0207617_1024022	F029216	AGCTTLGGSAMYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAAGPIADITVVTTWGATWYCTYSGTN
Ga0207617_102688	Ga0207617_1026881	F098176	IICGMSIVGTSEAYWLTGGGFTGWHQIHHEDENIALSTAAQLPPQCALVASYRNTSETLVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRSAMNELNTALEGITDADPIFAPQGLAIVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQASS
Ga0207617_102797	Ga0207617_1027971	F003167	MEPTITQNGALFAVQHRLARTNYRQHHHPQIASPNKTISTLRTSVGEFVFRQTPLGCYLELSVGNVHWALGLYGTNEAAVRALKNGRTGFRTWDALKRKTAANQIGTLSRWNKGEQTA
Ga0207617_103002	Ga0207617_1030021	F070698	TLMAILNLSETWNNGHNTTFRDSYLEDDNSKILPNGNAPYVIKGNGDCIIIVHADALGASKNFGDGH
Ga0207617_103203	Ga0207617_1032031	F068543	VVIESAIDQAGNSLSPGDLITPQKVTYLFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP
Ga0207617_103504	Ga0207617_1035043	F012159	FDFLFNPALQNADIPLVGRLFGYVFMLAALAVGGYLVLKAAQDTGPTSANQQQMEDSASQVAASINLQQATPAMEAWFNATGTYVGAQAQVPPSFGVTLVRADKFSYCLQAGSGANVQHMNGPNENAPVAGPC
Ga0207617_103871	Ga0207617_1038711	F084203	MRARVRRAMWMLGALALAVPASAQESTDVAPLTPEDSALLANALVFDPAALVTAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPLQTEWSNSVGADLAPSRPATYPLPLPTEHNNGLPAGAAL
Ga0207617_103912	Ga0207617_1039121	F000569	MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGTLYTLPHFLGGLSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP
Ga0207617_104713	Ga0207617_1047131	F084464	LVGMAGAPANAVTTTLTGTLTSDHCTDGCGPQTGGFGTITVVDNGLGTGGAVGTLAFTVQLINSNTFAAGGQDVTFGFDLAGNPTITYSVLPNSLPNTRAWFIPNVGAGNTQAAGTLHADGFGDVEYGVEMDGSGASGSPPDLLKFSISAVNLDWTDLETIMVADIFAGSGPGQGNTGFVDFTGN
Ga0207617_104793	Ga0207617_1047931	F020931	DKESEANSVYSVSNKELLEIVEKKKKVLEKDLIDNLEPTRNLVLDCLNRLRKNADELEEQEIKAESPQFESLINTSKKILITSIKKESLIESYQIKSYEDAIKFKNNLELLINRFGQVGDSHNRILNEFMRKQINKLKSEFDNLSSLLKTVTKIISTKENQINSCIQCKADLILLDEKMNETR
Ga0207617_105366	Ga0207617_1053661	F006430	PRFQRYLLWFGVAFFAVGAAALVFAFVGGSDNKSANPDKGFHAQLPSKQVALKNADGVTVKTFGQLDPQIRADIKTFIGTAVARKNLGRSWAVVSPTLKRDYTQASWAKGSDLPVVPYPGVDTKRIQYFLDYASTKEILIEVGLAGKKGVSTRPVTFQLGLVRGEGSSHPWLVDY
Ga0207617_105456	Ga0207617_1054562	F019889	SILQDYFGNDPPASTLCVLRGLANPNFLLEIEAIAAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027428: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-11 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences