NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F068543

Metagenome Family F068543

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F068543
Family Type Metagenome
Number of Sequences 124
Average Sequence Length 97 residues
Representative Sequence CPLLEPTVVIDSAVDQAGNDLSPGDLISPQKVTFTFSAHASNTVEALEEEGPQDYEFECALDDESYSSCSSPMLYDMEAGKHNFEVRLVP
Number of Associated Samples 107
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Archaea
% of genes with valid RBS motifs 1.65 %
% of genes near scaffold ends (potentially truncated) 93.55 %
% of genes from short scaffolds (< 2000 bps) 96.77 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Archaea (89.516 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(15.323 % of family members)
Environment Ontology (ENVO) Unclassified
(24.194 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(47.581 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 3.39%    β-sheet: 34.75%    Coil/Unstructured: 61.86%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF00353HemolysinCabind 22.58
PF02494HYR 4.03



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.55 %
UnclassifiedrootN/A6.45 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886012|MBSR1b_contig_9812362All Organisms → cellular organisms → Archaea1374Open in IMG/M
2209111006|2214896617All Organisms → cellular organisms → Archaea562Open in IMG/M
2228664021|ICCgaii200_c0785826All Organisms → cellular organisms → Archaea613Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c2044886All Organisms → cellular organisms → Archaea544Open in IMG/M
3300000559|F14TC_103143478All Organisms → cellular organisms → Archaea1205Open in IMG/M
3300000881|JGI10215J12807_1244190All Organisms → cellular organisms → Archaea807Open in IMG/M
3300000881|JGI10215J12807_1320509All Organisms → cellular organisms → Archaea501Open in IMG/M
3300000890|JGI11643J12802_11422904All Organisms → cellular organisms → Archaea1220Open in IMG/M
3300001904|JGI24736J21556_1055225All Organisms → cellular organisms → Archaea612Open in IMG/M
3300003349|JGI26129J50193_1004083All Organisms → cellular organisms → Archaea1029Open in IMG/M
3300003380|JGI26144J50225_100697All Organisms → cellular organisms → Archaea1118Open in IMG/M
3300003405|JGI26132J50249_102264All Organisms → cellular organisms → Archaea674Open in IMG/M
3300003502|JGI26143J51219_1003004All Organisms → cellular organisms → Archaea763Open in IMG/M
3300003504|JGI26138J51218_106726All Organisms → cellular organisms → Archaea537Open in IMG/M
3300004156|Ga0062589_100267818All Organisms → cellular organisms → Archaea1295Open in IMG/M
3300004157|Ga0062590_102003409All Organisms → cellular organisms → Archaea600Open in IMG/M
3300004157|Ga0062590_102458387All Organisms → cellular organisms → Archaea551Open in IMG/M
3300005328|Ga0070676_10097678All Organisms → cellular organisms → Archaea1809Open in IMG/M
3300005336|Ga0070680_100649553All Organisms → cellular organisms → Archaea907Open in IMG/M
3300005353|Ga0070669_101867222All Organisms → cellular organisms → Archaea524Open in IMG/M
3300005364|Ga0070673_101325835All Organisms → cellular organisms → Archaea676Open in IMG/M
3300005441|Ga0070700_101246131All Organisms → cellular organisms → Archaea623Open in IMG/M
3300005444|Ga0070694_100704950All Organisms → cellular organisms → Archaea821Open in IMG/M
3300005518|Ga0070699_101921502All Organisms → cellular organisms → Archaea541Open in IMG/M
3300005618|Ga0068864_100750191All Organisms → cellular organisms → Archaea956Open in IMG/M
3300005718|Ga0068866_10376728All Organisms → cellular organisms → Archaea909Open in IMG/M
3300006049|Ga0075417_10661804All Organisms → cellular organisms → Archaea534Open in IMG/M
3300006845|Ga0075421_100787143All Organisms → cellular organisms → Bacteria → Proteobacteria1096Open in IMG/M
3300006845|Ga0075421_102625569All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → Hyalangium minutum522Open in IMG/M
3300006847|Ga0075431_102222699All Organisms → cellular organisms → Archaea503Open in IMG/M
3300006854|Ga0075425_100675487All Organisms → cellular organisms → Bacteria1187Open in IMG/M
3300006880|Ga0075429_100166914All Organisms → cellular organisms → Archaea1928Open in IMG/M
3300006881|Ga0068865_101124973All Organisms → cellular organisms → Archaea692Open in IMG/M
3300007076|Ga0075435_100623464All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300009094|Ga0111539_10282608All Organisms → cellular organisms → Archaea1931Open in IMG/M
3300009094|Ga0111539_10321502All Organisms → cellular organisms → Archaea1801Open in IMG/M
3300009100|Ga0075418_10708502All Organisms → cellular organisms → Archaea1085Open in IMG/M
3300009147|Ga0114129_10323358All Organisms → cellular organisms → Archaea2050Open in IMG/M
3300009156|Ga0111538_10762228All Organisms → cellular organisms → Archaea1225Open in IMG/M
3300009799|Ga0105075_1008062All Organisms → cellular organisms → Archaea921Open in IMG/M
3300009800|Ga0105069_1008271All Organisms → cellular organisms → Archaea846Open in IMG/M
3300009802|Ga0105073_1019804Not Available704Open in IMG/M
3300009808|Ga0105071_1030900All Organisms → cellular organisms → Archaea807Open in IMG/M
3300009817|Ga0105062_1028931All Organisms → cellular organisms → Archaea962Open in IMG/M
3300009817|Ga0105062_1116378Not Available539Open in IMG/M
3300012081|Ga0154003_1085133All Organisms → cellular organisms → Archaea546Open in IMG/M
3300012487|Ga0157321_1021740All Organisms → cellular organisms → Archaea593Open in IMG/M
3300012487|Ga0157321_1029160All Organisms → cellular organisms → Archaea553Open in IMG/M
3300012492|Ga0157335_1010087All Organisms → cellular organisms → Archaea753Open in IMG/M
3300012501|Ga0157351_1045575Not Available561Open in IMG/M
3300012509|Ga0157334_1038383All Organisms → cellular organisms → Archaea615Open in IMG/M
3300012514|Ga0157330_1034387All Organisms → cellular organisms → Archaea652Open in IMG/M
3300012892|Ga0157294_10211079All Organisms → cellular organisms → Archaea577Open in IMG/M
3300012908|Ga0157286_10324835All Organisms → cellular organisms → Archaea572Open in IMG/M
3300012911|Ga0157301_10369867All Organisms → cellular organisms → Archaea546Open in IMG/M
3300012972|Ga0134077_10172879All Organisms → cellular organisms → Archaea870Open in IMG/M
3300013100|Ga0157373_11570456All Organisms → cellular organisms → Archaea503Open in IMG/M
3300014254|Ga0075312_1036811All Organisms → cellular organisms → Archaea901Open in IMG/M
3300014263|Ga0075324_1060882All Organisms → cellular organisms → Archaea752Open in IMG/M
3300014326|Ga0157380_11936510All Organisms → cellular organisms → Archaea650Open in IMG/M
3300014326|Ga0157380_12138435All Organisms → cellular organisms → Archaea623Open in IMG/M
3300015371|Ga0132258_11668952All Organisms → cellular organisms → Archaea1607Open in IMG/M
3300015374|Ga0132255_101354170All Organisms → cellular organisms → Archaea1074Open in IMG/M
3300015374|Ga0132255_105384566All Organisms → cellular organisms → Archaea542Open in IMG/M
3300017659|Ga0134083_10357310All Organisms → cellular organisms → Archaea630Open in IMG/M
3300018028|Ga0184608_10066236All Organisms → cellular organisms → Archaea1455Open in IMG/M
3300018051|Ga0184620_10279065All Organisms → cellular organisms → Archaea562Open in IMG/M
3300018052|Ga0184638_1073307All Organisms → cellular organisms → Archaea1253Open in IMG/M
3300018061|Ga0184619_10055083All Organisms → cellular organisms → Archaea1737Open in IMG/M
3300018063|Ga0184637_10122335All Organisms → cellular organisms → Archaea1605Open in IMG/M
3300018076|Ga0184609_10195572All Organisms → cellular organisms → Archaea941Open in IMG/M
3300018081|Ga0184625_10516028All Organisms → cellular organisms → Archaea600Open in IMG/M
3300019869|Ga0193705_1029430All Organisms → cellular organisms → Archaea1181Open in IMG/M
3300020003|Ga0193739_1151076All Organisms → cellular organisms → Archaea555Open in IMG/M
3300022694|Ga0222623_10057292All Organisms → cellular organisms → Archaea1501Open in IMG/M
3300022899|Ga0247795_1041163All Organisms → cellular organisms → Archaea766Open in IMG/M
3300023073|Ga0247744_1023639All Organisms → cellular organisms → Archaea905Open in IMG/M
3300025290|Ga0207673_1058436All Organisms → cellular organisms → Archaea548Open in IMG/M
3300025917|Ga0207660_11264187All Organisms → cellular organisms → Archaea600Open in IMG/M
3300025923|Ga0207681_10199374All Organisms → cellular organisms → Archaea1536Open in IMG/M
3300025932|Ga0207690_11741062All Organisms → cellular organisms → Archaea520Open in IMG/M
3300025938|Ga0207704_10631643All Organisms → cellular organisms → Archaea880Open in IMG/M
3300025960|Ga0207651_11898933All Organisms → cellular organisms → Archaea535Open in IMG/M
3300025961|Ga0207712_10161223All Organisms → cellular organisms → Archaea1743Open in IMG/M
3300026095|Ga0207676_10218175All Organisms → cellular organisms → Archaea1697Open in IMG/M
3300026116|Ga0207674_10514319All Organisms → cellular organisms → Archaea1156Open in IMG/M
3300026324|Ga0209470_1111657All Organisms → cellular organisms → Archaea1219Open in IMG/M
3300027013|Ga0209884_1002851All Organisms → cellular organisms → Archaea1463Open in IMG/M
3300027379|Ga0209842_1036473Not Available914Open in IMG/M
3300027428|Ga0207617_103203All Organisms → cellular organisms → Archaea661Open in IMG/M
3300027442|Ga0207598_101180All Organisms → cellular organisms → Archaea629Open in IMG/M
3300027561|Ga0209887_1067541All Organisms → cellular organisms → Archaea748Open in IMG/M
3300027577|Ga0209874_1098099All Organisms → cellular organisms → Archaea700Open in IMG/M
3300027880|Ga0209481_10185007All Organisms → cellular organisms → Archaea1037Open in IMG/M
3300027909|Ga0209382_10278513All Organisms → cellular organisms → Archaea1891Open in IMG/M
3300027909|Ga0209382_10301125All Organisms → cellular organisms → Archaea1808Open in IMG/M
3300027909|Ga0209382_11441848All Organisms → cellular organisms → Archaea689Open in IMG/M
3300027909|Ga0209382_11699842All Organisms → cellular organisms → Archaea619Open in IMG/M
3300027947|Ga0209868_1003515All Organisms → cellular organisms → Archaea1435Open in IMG/M
3300027948|Ga0209858_1001896All Organisms → cellular organisms → Archaea1325Open in IMG/M
3300027948|Ga0209858_1004280All Organisms → cellular organisms → Archaea993Open in IMG/M
3300027948|Ga0209858_1009932Not Available750Open in IMG/M
3300027993|Ga0247749_1050610All Organisms → cellular organisms → Archaea509Open in IMG/M
(restricted) 3300027995|Ga0233418_10017419All Organisms → cellular organisms → Bacteria1777Open in IMG/M
3300028381|Ga0268264_10437238All Organisms → cellular organisms → Archaea1265Open in IMG/M
3300031547|Ga0310887_10706114All Organisms → cellular organisms → Archaea626Open in IMG/M
3300031562|Ga0310886_10069569All Organisms → cellular organisms → Archaea1662Open in IMG/M
3300031847|Ga0310907_10554792All Organisms → cellular organisms → Archaea621Open in IMG/M
3300031854|Ga0310904_10110999All Organisms → cellular organisms → Archaea1526Open in IMG/M
3300031854|Ga0310904_10131133All Organisms → cellular organisms → Archaea1429Open in IMG/M
3300031854|Ga0310904_10260802All Organisms → cellular organisms → Archaea1078Open in IMG/M
3300031892|Ga0310893_10041137All Organisms → cellular organisms → Archaea1489Open in IMG/M
3300031908|Ga0310900_11740672All Organisms → cellular organisms → Archaea529Open in IMG/M
3300031940|Ga0310901_10042768All Organisms → cellular organisms → Archaea1447Open in IMG/M
3300031940|Ga0310901_10579616All Organisms → cellular organisms → Archaea511Open in IMG/M
3300031944|Ga0310884_10077282All Organisms → cellular organisms → Archaea1574Open in IMG/M
3300032000|Ga0310903_10089078All Organisms → cellular organisms → Archaea1288Open in IMG/M
3300032017|Ga0310899_10051719All Organisms → cellular organisms → Archaea1506Open in IMG/M
3300032075|Ga0310890_10832189All Organisms → cellular organisms → Archaea733Open in IMG/M
3300032179|Ga0310889_10065671All Organisms → cellular organisms → Archaea1462Open in IMG/M
3300032211|Ga0310896_10825107All Organisms → cellular organisms → Archaea532Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere15.32%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil12.90%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand12.10%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment5.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.03%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere4.03%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere3.23%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.42%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.42%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.42%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere2.42%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.61%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.61%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.61%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.61%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.81%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.81%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.81%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.81%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens0.81%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886012Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
2209111006Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0Host-AssociatedOpen in IMG/M
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2Host-AssociatedOpen in IMG/M
3300003349Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PMHost-AssociatedOpen in IMG/M
3300003380Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PMHost-AssociatedOpen in IMG/M
3300003405Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AMHost-AssociatedOpen in IMG/M
3300003502Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PMHost-AssociatedOpen in IMG/M
3300003504Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AMHost-AssociatedOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009799Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30EnvironmentalOpen in IMG/M
3300009800Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40EnvironmentalOpen in IMG/M
3300009802Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60EnvironmentalOpen in IMG/M
3300009808Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50EnvironmentalOpen in IMG/M
3300009817Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20EnvironmentalOpen in IMG/M
3300012081Attine ant fungus gardens microbial communities from Florida, USA - TSFL087 MetaGHost-AssociatedOpen in IMG/M
3300012487Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510Host-AssociatedOpen in IMG/M
3300012492Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610Host-AssociatedOpen in IMG/M
3300012501Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610EnvironmentalOpen in IMG/M
3300012509Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6EnvironmentalOpen in IMG/M
3300012514Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510EnvironmentalOpen in IMG/M
3300012892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300014254Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2EnvironmentalOpen in IMG/M
3300014263Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300019869Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2EnvironmentalOpen in IMG/M
3300020003Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300022899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6EnvironmentalOpen in IMG/M
3300023073Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5EnvironmentalOpen in IMG/M
3300025290Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300027013Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027379Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027384Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027428Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027442Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027561Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027577Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027947Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50 (SPAdes)EnvironmentalOpen in IMG/M
3300027948Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60 (SPAdes)EnvironmentalOpen in IMG/M
3300027993Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S199-509C-5EnvironmentalOpen in IMG/M
3300027995 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MGEnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0701.000003902162886012Miscanthus RhizosphereVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS
22139521912209111006Arabidopsis RhizosphereVSDPCGTGIDNNVTGTTTITCPILEPTVMIDSAVGQAGNALSPGDLISPQKVTFTFSAHPSNTTEALGGPQNYVFECALDGQSYSSCNSPMTYDMTAGKHNFVVKLVS
ICCgaii200_078582612228664021SoilGRIDTEDEDCSIVQPAVVIESAIDQAGNSLSPGDLITPQKVTYLFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP
ICChiseqgaiiDRAFT_204488613300000033SoilCPILQPTVVIDSAVDQAGNGLSPGDLIVPQKVTFTFSAQANETTQNLEEEGPHDYQFECALDDESFSSCSSPMSYTMEMGKHNFVVRLVP*
F14TC_10314347823300000559SoilDGTNSNVTGVANTDCPLVEPTVVIKSAIDELGNSLSPNDVIAPQKVTFTFTAQANETSPAFEEEGPQDYQYQCALDDESFGSCSSPMTYTMEKGEHNFIVRLAP*
JGI10215J12807_124419023300000881SoilSDTCDSGADNNATGTINCPILEPDVVIDSAVDQAGNNLSPDDLIVPQKVTFRFSAQANETSQAFEEEGPNDYEFECALDDESFNTCSSPMTYPMEIGKHNFVVRLVP*
JGI10215J12807_132050913300000881SoilVSDTCGNGVDNNTTDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANETIQSLEEEGINDYEFECAVDDESFNSCSSPMTYAMEDGKHNFVVRLAP*
JGI11643J12802_1142290413300000890SoilQAGNSLSPGDLISPQKVTYSFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP*
JGI24736J21556_105522523300001904Corn RhizospherePILEPTVVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS*
JGI26129J50193_100408323300003349Arabidopsis Thaliana RhizospherePAVVIESAIDQAGNSLSPGDLXXPQKVTYXFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP*
JGI26144J50225_10069713300003380Arabidopsis Thaliana RhizosphereESAIDQAGNSLSPGDLITPQKVTYLFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP*
JGI26132J50249_10226423300003405Arabidopsis Thaliana RhizosphereAVVIESAIDQAGNSLSPGDLISPQKVTYSFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP*
JGI26143J51219_100300413300003502Arabidopsis Thaliana RhizosphereDCSIVQPAVVIESAIDQAGNSLSPGDLISPQKVTYSFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP*
JGI26138J51218_10672613300003504Arabidopsis Thaliana RhizosphereTAETAVVIESAVDEAGNSLSQGDLIIPQKVTFTFSADASGATQAFEEEGSQDYEFECALDDDSFSSCNSPQTINMEDGKHTLVVRLAESD*
Ga0062589_10026781813300004156SoilPPPVSDTCGNGVDNNTTDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANETIQSLEEEGINDYEFECAVDDESFNSCSSPMTYAMEDGKHNFVVRLAP*
Ga0062590_10200340913300004157SoilNNTTGANNCPLEPTVVIDSAVDQEGNNLSPNDLIAPQKVTFTFSAQEREASQAAEEDPQKYHFECALDDESFSSCNSPMSYNMEMGKHNFIVKVVP*
Ga0062590_10245838713300004157SoilGGGVDNNATDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANETIQSLEEEGINDYEFECAVDDESFNSCSSPMTYAMEDGKHNFVVRLAP*
Ga0070676_1009767823300005328Miscanthus RhizosphereTNGTTTVACPLLEPTVVIDSAVDQAGNDLSPGDLISPQKVTFTFSAHASNTVEALEEEGPQDYEFECALDDESYSSCSSPMLYDMEAGKHNFEVRLLP*
Ga0070680_10064955313300005336Corn RhizosphereTINCPILEPDVVIDSAVDQAGNNLSPDDLIVPQKVTFRFSAQANETSQAFEEEGPNDYEFECALDDESFNTCSSPMTYPMEIGKHNFVVRLVP*
Ga0070669_10186722213300005353Switchgrass RhizosphereVTGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMEAGKHNFEVRLVP*
Ga0070673_10132583513300005364Switchgrass RhizosphereNGTSMDCIPPISNACDDTEDNNTTDAINCPVKPNVAIDSAVDEAGNSLSQGDLIIPQKVTFTFSANASEATQALEGGSAKDYQFECSVDDESFKACSSPMTYAMETGKHNFVVRLVP*
Ga0070700_10124613113300005441Corn, Switchgrass And Miscanthus RhizosphereNGVDNNTTDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANDTIQSLEEEGINDYEFECAVDDESFNACSSPMTYAMEDGKHNFVVRLAP*
Ga0070694_10070495013300005444Corn, Switchgrass And Miscanthus RhizosphereEDEDCSIVQPAVVIESAIDQAGNSLSPGDLITPQKVTYLFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP*
Ga0070699_10192150213300005518Corn, Switchgrass And Miscanthus RhizosphereDTEDNNTTDAINCPVKPNVAIDSAVDEAGNSLSQGDLIIPQKVTFTFSANASEATQALEGGSAKDYQFECSVDDESFKACSSPMTYAMETGKHNFVVRLVP*
Ga0068864_10075019113300005618Switchgrass RhizosphereSDNCSNAVDNNTTGANNCPLEPTVVIDSAVDQEGNNLSPNDLIAPQKVTFTFSAQEREASQAAEEDPQKYHFECALDDESFSSCNSPMSYNMEMGKHNFIVKVVP*
Ga0068866_1037672813300005718Miscanthus RhizosphereDNNTNGTKICPILEPTVVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS*
Ga0075417_1066180413300006049Populus RhizosphereSTGAINCPILQPTVVIHSATDEAGNALSPGDLIVPQKVTFTFFAHANETTQDLEEEGPPDYKYECALDDQSFSACSSPTSYSMDIGKHNFVVKLVS*
Ga0075421_10078714323300006845Populus RhizosphereNVTSTINCPILQPTVVIESAVDAAGNTLSPDDIISPQDVTFKFSVQGSETAIEEADPRFECALDDESFNTCSSPMTYLMEKGKHNFVVKLISSDTVTVE*
Ga0075421_10262556913300006845Populus RhizosphereVDNNVTGTTNCPTLEPTVVIKSAVGEAGDTLSPGDLIVPQKVTFTFSAEANETSQAFEEEGPQDYQYECALDNEQFSACSSPMTYNMDLGKHNFVVKLVP*
Ga0075431_10222269913300006847Populus RhizosphereCPILEPTVVIESAEDAAGNTLSPDDIISPQEVTFRFSVQASETAIEEADPQFECALDDESFNSCSSPMTYLMEKGKHNFVVKLVPSDIVIIE*
Ga0075420_10019546213300006853Populus RhizosphereGNTLSPDDIISPQEVTFKFSVQASETEIEEADPRFECALDDESFNACSSPMTYLMEKGKHNFVVKLVPSDIVIIQ*
Ga0075425_10067548723300006854Populus RhizosphereACTPPVSDPCTDGTNNNVTGTANIDCPLLQPTVVIKSATDELGNSLSPNDIIAPQKVTFTFTAEANETSQVFEEEGPQDYQFQCSLDHESFSSCNSPMTYTMEKGKHNFVVRLGP*
Ga0075429_10016691413300006880Populus RhizosphereDGVDNNVTSMINCPILEPTVVIESAVDAAGNTLSPDDIISPQEVTFKFSVQASETEIEEADPRFECALDDESFNACSSPMTYLMEKGKHNFVVKLVPSDIVIIQ*
Ga0068865_10112497323300006881Miscanthus RhizosphereCPLLEPTVVIDSAVDQAGNDLSPGDLISPQKVTFTFSAHASNTVEALEEEGPQDYEFECALDDESYSSCSSPMLYDMEAGKHNFEVRLVP*
Ga0075435_10062346413300007076Populus RhizosphereCTPPVSDPCTDGTNNNVTGTANIDCPLLQPTVVIKSATDELGNSLSPNDIIAPQKVTFTFTAEANETSQVFEEEGPQDYQFQCSLDHESFSSCNSPMTYTMEKGKHNFVVRLGP*
Ga0111539_1028260823300009094Populus RhizosphereVSEPCTNGVDNNVTGTTNCPTLEPTVVIKSAVGEAGDTLSPGDLIVPQKVTFTFSAEANETSQAFEEEGPQDYQYECALDNEQFSACSSPMTYNMDLGKHNFVVKLVP*
Ga0111539_1032150223300009094Populus RhizosphereVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS*
Ga0075418_1070850213300009100Populus RhizosphereSATDELGNSLSPNDIIAPQKVTFTFTAEANETSQAFEEEGPQDYQFQCALDDESFSSCNSPMSYTMEMGKHNFVVRLVP*
Ga0114129_1032335813300009147Populus RhizosphereNVTDTINCPILEPTVVIDSAVDQAGNSLSPGDLIVPQKVTFTFSAQANESSQAFEEEGPQDYQFQCALDDGSFSSCSSPMTYSMEMGKHNFVVRLVS*
Ga0111538_1076222823300009156Populus RhizosphereLEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQSNDTIQSLEEEGINDYEFECAVDDESFNSCSSPMTYTMEEGKHNFVVRLVPS*
Ga0105075_100806223300009799Groundwater SandGVNDTSDGTNATASGEDCPVVVPTIVIESATDEAGNSLYPDDLIAPQKVTFTFSAQASETSQAFEEEDPQDYQYECALDDESFNTCSSPMTYDMEVGKHNFVVRLAS*
Ga0105069_100827123300009800Groundwater SandNDTSDGTNATASGEDCPVVVPTIVIESATDEAGNSLYPDDLIAPQKVTFTFSAQASETSQAFEEEDPQDYQYECALDDESFNTCSSPMTYDMEVGKHNFVVRLAS*
Ga0105073_101980413300009802Groundwater SandSGEDCPAVLPTIAIESATDELGNSLSPDDVIAPQKVTFTFSAQANETSQAFEEEGPQDYEYECALDDGSFNTCSSPMTYPMEVGKHNFVVRLVS*
Ga0105071_103090023300009808Groundwater SandIVIESAVDEAGNNLSPGDLIAPQKVTFTFSAQANETSQAFEEEGPQDYQYECALDDESFNTCSSPMTYAMENGKHNFVVRLAS*
Ga0105062_102893113300009817Groundwater SandNGVNDTSDGTNATASGEDCPVVLPTIAIESATDELGNALSPGDLIAPQKVTFTFSAQASETIQPFEEESPQDYQYECALDDESFSGCSSPMTYAMEEGKHNFVVRLVP*
Ga0105062_111637823300009817Groundwater SandDGTNATASGEDCPVVQPTIAIESATDEAGNSLSPNDLIAPQKVTFTFSAHASETSQAFEEEGPQDYEYECALDDGSFNTCSSPMTYPMEVGKHNFVVRLVS*
Ga0154003_108513313300012081Attine Ant Fungus GardensCGNGVDNNVTDVINCPILQPVVVIESAVDEAGKPLSPDDLISPQKVTFTFSAQANETTQNLEEQGVQDYLFECALDDESFNSCNSPMTYDMEIGKHNFVVRLVS*
Ga0157321_102174013300012487Arabidopsis RhizosphereSDPCGTGVDNNVTGTTNGTINCPILEPTVVIDSAVDQLGNVLSPGDLIAPQKVTFTFSAHVSAATQALEEVGPHDYQFECALDDASYKACSSPMTYTMINGKHNFEVRLVS*
Ga0157321_102916013300012487Arabidopsis RhizosphereICPILEPTVVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS*
Ga0157335_101008713300012492Arabidopsis RhizosphereVSTCTNGIDNNTNGTKICPILEPTVVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS*
Ga0157351_104557523300012501Unplanted SoilEPTVMIDSAVGQAGNALSPGDLISPQKVTFIFSAHPSNTTEALGGPKDYAFECALDGQSYSSCNSPMTYDMTAGKHNFVVKLVS*
Ga0157334_103838313300012509SoilAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS*
Ga0157330_103438713300012514SoilGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS*
Ga0157294_1021107913300012892SoilDNNTTDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANDTIQSLEEEGINDYEFECAVDDESFNSCSSPMTYAMEDGKHNFVVRLAP*
Ga0157286_1032483523300012908SoilATGTINCPIVEPTVVIDSAVDQAGNALAPGDLISPQKVTFTFSTQANETIQNLEEEGPNDYEFECAVDDASFNSCSSPMTYTMEEGKHNFVVRLVP*
Ga0157301_1036986713300012911SoilVDNNTTDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMEAGQHNFEVRLVP*
Ga0134077_1017287913300012972Grasslands SoilINCPILQPTVVIDSAIDEAGNSLSPGDLIVPQKVTFTFSAQGTETTQNVQKGSSIQEDKFECALDDESFSSCSSPMSYAMEKGKHDFVVKLVS*
Ga0157373_1157045613300013100Corn RhizosphereNVTGTTNGTTTVACPLLEPTVVIDSAVDQAGNDLSPGDLISPQKVTFTFSAHASNTVEALEEEGPQDYEFECALDDESYSSCSSPMLYDMEAGKHNFEVRLVP*
Ga0075312_103681113300014254Natural And Restored WetlandsTPVSDTCDNGIDNNITGTINCPILEPTVVIDSAVDQVGNPLSPGDLISPQEVTFTFSAQTNETTQNLEEEGAQDYQYECALDEESFSSCNSPMTYEMEAGKHDFVVRLAP*
Ga0075324_106088213300014263Natural And Restored WetlandsITGTINCPILEPTVVIDSAVDQVGNPLSPGDLISPQEVTFTFSAQTNETTQNLEEEGAQDYQYECALDEESFSSCNSPMTYEMEAGKHDFVVRLAP*
Ga0157380_1193651013300014326Switchgrass RhizosphereGVDNNTTDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANDTIQSLEEEGINDYEFECAVDDESFNSCSSPMTYAMEDGKHNFVVRLAP*
Ga0157380_1213843513300014326Switchgrass RhizosphereCIPPISNACDDTEDNNTTDAINCPVKPNVAIDSAVDEAGNSLSQGDLIIPQKVTFTFSANASEATQALEGGSAKDYQFECSVDDESFKACSSPMTYAMETGKHNFVVRLVP*
Ga0132258_1166895223300015371Arabidopsis RhizosphereLEPKVVINSAVDQLGNDLSPGDLIVPQKVTFTFSAQANETTQIRNDSPDYKFECAVDDASFSACSSPMTYTMDVGKHNFVVRLAS*
Ga0132255_10135417023300015374Arabidopsis RhizosphereCSPPVSTCTNGIDNNTNGTKICPILEPTVAIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS*
Ga0132255_10538456613300015374Arabidopsis RhizosphereTCPILEPTVMIDSAVGQAGNALSPGDLISPQKVTFTFSAHSSNTTEALGGPQDYVFECALDGQSYSSCNSPMTYDMTAGKHNFVVKLVS*
Ga0134083_1035731013300017659Grasslands SoilCVNGIDNNVTDTINCPILQPTVVIDSAIDEAGNSLSPGDLIVPQKVTFTFSALGTETTQNVQKGSSIQEDKFECALDDESFSSCSSPMSYAMEKGKHDFVVKLVSELIIF
Ga0184608_1006623613300018028Groundwater SedimentNNVTGTTTNCPLLEPTVVIRSAIDQLGNSLSPNDVIAPQKVTFTFSAQANETSQASEEEGPQDYQFECALDDESFNNCSSPMMYPMEAGKHNFVVRLVP
Ga0184620_1027906523300018051Groundwater SedimentPPVSEPCGSGVDNNVTDTVNCPILEPTVLIDSAVDQAGNSLSPGDLIAPQKVTFTFSAQANESSQAFEEEGPQDYQFQCALDDGSFSSCSSPMTYSMEMGKHNFVVRLVP
Ga0184638_107330723300018052Groundwater SedimentSDGTNATASGEDCPVVQPTIAIESATDELGNALSPGDLIAPQKVTFTFSAHASETSQAFEEEGPQDYQYECALDDESFSGCSSPMTYPMEMGKHNFVVRLVP
Ga0184619_1005508323300018061Groundwater SedimentVIKSAIDELGNSLSPDDVIAPQKVTFTFTAEANETSQAFEEEGPQDYQFQCALDDGSFSSCSSPMAYSMEMGKHNFVVRLVP
Ga0184637_1012233513300018063Groundwater SedimentTVVIDSAVDQVGNPLSPGDLISPQEVTFTFSAQTNETTQSLEEEGPHDYEFECAVDDEPFSPCNSPMPYPMEMGKHNFVVRLVP
Ga0184609_1019557223300018076Groundwater SedimentNCPILEPTVVIDSAKDEAGNALSPDDLIAPQKVTFTFSAQANETTEAFEEEGPQDYQFDCALDDESFSACSSPMTYTMEEGKHNFVVRVVP
Ga0184625_1051602813300018081Groundwater SedimentADGTDNNVTSTTNIVCPLLEPTVVIKSAIDELGNSLSPDDVIAPQKVTFTFTAEANETSQAFEEEGPNDYQYQCALDDESFSSCSSPMMYTMEMGKHNFVVRLVP
Ga0193705_102943023300019869SoilETCGNGIDNNVTGTINCPILEPTVVIKSAQDEAGNALSPGDLIAPQKVTFTFSAEANETSQAFEEEGPQDYQFQCALDDESFSSCSSPMSYTMELGKHNFVVRLVS
Ga0193739_115107623300020003SoilIDDDADGKIDTEDEDCSIVQPAVVIESALDEAGNSLSPGDLIAPQKITFSFTAQANETVQTLEEEGQQDYQYECALDDESFSSCNSPMTYEMEAGKHDFVVRLVS
Ga0222623_1005729213300022694Groundwater SedimentNVTDTINCPILEPTVVIDSAVDQAGNSLSPGDLIAPQKVTFTFSAQANESSQAFEEEGPQDYQFQCALDDGSFSSCSSPMSYTMEMGKHNFVVRLVP
Ga0247795_104116323300022899SoilTAVVIESAVDEAGNSLSQGDLIIPQKVTFTFSADASGATQAFEEEGSQDYEFECALDDDSFSSCNSPQTINMEDGKHTLVVRLAESD
Ga0247744_102363923300023073SoilETAVVIESAVDEAGNSLSQGDLIIPQKVTFTFSADASGATQAFEEEGSQDYEFECALDDDSFSSCNSPQTINMEDGKHTLVVRLAESD
Ga0207673_105843613300025290Corn, Switchgrass And Miscanthus RhizosphereTNGIDNNTNGTKICPILEPTVVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVSXTLFIIKELSATDAAGI
Ga0207660_1126418713300025917Corn RhizosphereDSAVDEAGNSLSQGDLIIPQKVTFTFSANASEATQALEGGSAKDYQFECSVDDESFKACSSPMTYAMETGKHNFVVRLVP
Ga0207681_1019937413300025923Switchgrass RhizosphereACPPPVSDTCGNGVDNNTTDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANDTIQSLEEEGINDYEFECAVDDESFNACSSPMTYAMEDGKHNFVVRLAP
Ga0207690_1174106213300025932Corn RhizosphereAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS
Ga0207704_1063164313300025938Miscanthus RhizospherePVTEPCADGIGNNVTGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMEAGKHNFEVRLVP
Ga0207651_1189893313300025960Switchgrass RhizosphereNGTSMDCIPPISNACDDTEDNNTTDAINCPVKPNVAIDSAVDEAGNSLSQGDLIIPQKVTFTFSANASEATQALEGGSAKDYQFECSVDDESFKACSSPMTYAMETGKHNFVVRLVP
Ga0207712_1016122313300025961Switchgrass RhizosphereACPLLEPTVVIDSAVDQAGNDLSPGDLISPQKVTFTFSAHASNTVEALEEEGPQDYEFECALDDESYSSCSSPMLYDMEAGKHNFEVRLLP
Ga0207676_1021817533300026095Switchgrass RhizosphereVIDSAVDQAGNDLSPGDLISPQKVTFTFSAHASNTVEALEEEGPQDYEFECALDDESYSSCSSPMLYDMEAGKHNFEVRLLP
Ga0207674_1051431923300026116Corn RhizosphereVQPAVVIESAIDQAGNSLSPGDLITPQKVTYLFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP
Ga0209470_111165723300026324SoilVIDSAIDEAGNSLSPGDLIVPQKVTFTFSAQGTETTQNVQKGSSIQEDKFECALDDESFSSCSSPMSYAMEKGKHDFVVKLVS
Ga0209884_100285123300027013Groundwater SandDTSDGTNATASGEDCPVVLPTIAIESATDELGNALSPGDLIAPQEVTFTFSAQANETTQAFEEEGPQDYQYECALDDESFNTCSSPMTYAIEMGKHNFVVRLVP
Ga0209842_103647333300027379Groundwater SandESATDEAGNSLSPNDLIAPQKVTFTFSAHASETSQAFEEEGPQDYEYECALDDGSFNTCSSPMTYPMEVGKHNFVVRLVS
Ga0209854_103315913300027384Groundwater SandICGNGVNDTSDGTNATASGEDCPVVVPTIVIESATDEAGNSLYPDDLIAPQKVTFTFSAQASETSQAFEEEDPQDYQYECALDDESFNTCSSPMTYDMEVGKHNFVVRLAS
Ga0207617_10320313300027428SoilVVIESAIDQAGNSLSPGDLITPQKVTYLFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP
Ga0207598_10118013300027442SoilDNNATGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMQAGKHNFEVRLVP
Ga0209887_106754113300027561Groundwater SandNGVNDTSDGTNATASGEDCPVVLPTIAIESATDELGNALSPGDLIAPQEVTFTFSAQANETTQAFEEEGPQDYQYECALDDESFNTCSSPMTYAIEMGKHNFVVRLVP
Ga0209874_109809923300027577Groundwater SandEDCPVVLPTIAIESATDELGNALSPGDLIAPQEVTFTFSAQANETTQAFEEEGPQDYQYECALDDESFNTCSSPMTYAIEMGKHNFVVRLVP
Ga0209481_1018500713300027880Populus RhizosphereSGVDNNATGMINCPILEPTVVIDSAVDQVGNELSPGDLISPQKVTFTFSVQANETIQSLEEEGPNDYEFECAVDDESFNSCSSPMIYAMEEGKHNFVVRLVP
Ga0209382_1027851323300027909Populus RhizosphereNVTSTINCPILQPTVVIESAVDAAGNTLSPDDIISPQDVTFKFSVQGSETAIEEADPRFECALDDESFNTCSSPMTYLMEKGKHNFVVKLISSDTVTVE
Ga0209382_1030112513300027909Populus RhizosphereNRTTTVACTPPVTEPCVDGTNNNATGTISCPALEPTVVINSAIGQAGNALSPGDLIAPQKVTFTFSAEANETSPAFEEEGPHDYQFECAVDDASFSTCSSPMTYDMELGKHNFVVRLAP
Ga0209382_1144184813300027909Populus RhizosphereTNATTTEACTPPVSEPCTNGVDNNVTGTTNCPTLEPTVVIKSAVGEAGDTLSPGDLIVPQKVTFTFSAEANETSQAFEEEGPQDYQYECALDNEQFSACSSPMTYNMDLGKHNFVVKLVP
Ga0209382_1169984213300027909Populus RhizosphereNCPILEPTVVIDSAVDAAGNTLSPNDIISPQEVTFRFSVQANETAIEEADPNFECALDDESFNACSSPMTYLMEKGKHNFVVKLVPSDIVIIE
Ga0209382_1213138513300027909Populus RhizosphereVIESAVDAAGNTLSPDDIISPQEVTFRFSVQASETAIEEADPEFECALDDESYNACSSPMTYLMEEGKHNFVVKLVPSDTVIIE
Ga0209868_100351533300027947Groundwater SandNDTSDGTNATASGEDCPAVLPTIAIESATDELGNSLSPDDVIAPQKVTFTFSAQANETSQAFEEEGPQDYQFECAVDDESYSGCSSPMTYAMENGKHNFVVRLVS
Ga0209858_100189613300027948Groundwater SandTNATASGEDCPVVLPTIAIESATDELGNALSPGDLIAPQKVTFAFSAQASETTQAFEEEGPQDYQYECALDDESFSGCSSPMTYPMEAGKHNFVVRLVS
Ga0209858_100428013300027948Groundwater SandPTIVIESATDELGNALSPGDLIAPQKVTFAFSAQASETTQAFEEEGPQDYQYECALDDESFSTCSSPMTYAMEEGKHNFVVRLVP
Ga0209858_100993213300027948Groundwater SandIESATDEAGNSLSPNDLIAPQKVTFTFSAHASETSQAFEEEGPQDYEYECALDDGSFNTCSSPMTYPMEVGKHNFVVRLVS
Ga0247749_105061013300027993SoilCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANETIQSLEEEGINDYEFECAVDDESFNSCSSPMTYAMEDGKHNFVVRLAP
(restricted) Ga0233418_1001741923300027995SedimentIDSAVDEEGEPLSPGDLIAPQEVTFTFSAHGSETSQSFEVKSTQGHQFECALDDESFSSCSSPMTYGMEAGKHDFVVRLVS
Ga0268264_1043723813300028381Switchgrass RhizosphereNTTDAINCPVKPNVAIDSAVDEAGNSLSQGDLIIPQKVTFTFSANASEATQALEGGSAKDYQFECSVDDESFKACSSPMTYAMETGKHNFVVRLVP
Ga0310887_1070611413300031547SoilGVDNNATGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMQAGKHNFEVRLVP
Ga0310886_1006956923300031562SoilPPVTEPCADGIGNNATGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMQAGKHNFEVRLVP
Ga0310907_1055479223300031847SoilDQAGNSLSPGDLIAPQKVTYSFSAQASETVQALEEEGPQDYQYECSLDDESFSSCNSPMTYDLEEGKHDFVVRLVP
Ga0310904_1011099913300031854SoilVDDDADGKIDVEDKDCPVVEPTVVIESALDQAGNSLSPGDLISPQKVTYSFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP
Ga0310904_1013113323300031854SoilNCPILEPTVVIDSAVDQAGNALAPGDLISPQKVTFTFSAQANETIQNLEEEGPNDYEFECAVDDASFNSCSSPMTYTMEEGKHNFVVRLVS
Ga0310904_1026080213300031854SoilLEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANDTIQSLEEEGINDYEFECAVDDESFNACSSPMTYAMEDGKHNFVVRLAP
Ga0310893_1004113723300031892SoilTKICPILEPTVVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS
Ga0310900_1174067213300031908SoilDNNATGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMEAGKHNFEVRLVPXTLFVTSELLAMYAAAF
Ga0310901_1004276813300031940SoilTGTINCPILEPTVVIDSAVDQAGNALAPGDLISPQKVTFTFSAQANETIQNLEEEGPNDYEFECAVDDASFNSCSSPMTYTMEEGKHNFVVRLVS
Ga0310901_1057961623300031940SoilGIGNNATGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMQAGKHNFEVRLVPXTLFVTSELLAMYAAAF
Ga0310884_1007728213300031944SoilALDQAGNSLSPGDLIAPQKVTYSFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP
Ga0310903_1008907823300032000SoilSDTCGNGVDNNATDTIDCPILEPTVVIDSAVDQAGNALSPGDLISPQEVTFTFSAQANDTIQSLEEEGINDYEFECAVDDESFNACSSPMTYAMEDGKHNFVVRLAP
Ga0310899_1005171923300032017SoilNGTKICPILEPTVAIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS
Ga0310890_1083218913300032075SoilVVIDSAVDQAGNNLSPDDLIVPQKVTFRFSAQANETSQAFEEEGPNDYEFECALDDESFNTCSSPMTYPMEIGKHNFVVRLVP
Ga0310889_1006567113300032179SoilILEPTVVIDSAVGQAGNALSPGDFISPQKVTFTFSAHASNTTESLAEKGPQGYVFECALDDESYSSCNSPMTYDMTAGKHNFEVRLVS
Ga0310896_1082510713300032211SoilIGNNATGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMEAGKHNFEVRLVPXTLFVTSELLAMYAAAF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.