NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027385

3300027385: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027385 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0055662 | Ga0207540
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size28214469
Sequencing Scaffolds28
Novel Protein Genes31
Associated Families31

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
Not Available9
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000569Metagenome / Metatranscriptome1018Y
F003059Metagenome / Metatranscriptome510Y
F010544Metagenome / Metatranscriptome302Y
F011315Metagenome292Y
F011676Metagenome288Y
F011785Metagenome / Metatranscriptome287Y
F011965Metagenome285Y
F014399Metagenome / Metatranscriptome263Y
F017759Metagenome239N
F017892Metagenome / Metatranscriptome238Y
F019404Metagenome230Y
F019758Metagenome / Metatranscriptome228Y
F020078Metagenome / Metatranscriptome226Y
F026346Metagenome / Metatranscriptome198Y
F029216Metagenome / Metatranscriptome189Y
F030200Metagenome / Metatranscriptome186Y
F032982Metagenome178Y
F035100Metagenome / Metatranscriptome173Y
F052029Metagenome143Y
F055762Metagenome138Y
F063749Metagenome / Metatranscriptome129Y
F063850Metagenome129N
F064025Metagenome / Metatranscriptome129N
F078510Metagenome / Metatranscriptome116Y
F079269Metagenome116N
F082926Metagenome / Metatranscriptome113N
F088474Metagenome109Y
F094309Metagenome106N
F097928Metagenome / Metatranscriptome104N
F101404Metagenome / Metatranscriptome102Y
F105951Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207540_100769All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales908Open in IMG/M
Ga0207540_100805All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium899Open in IMG/M
Ga0207540_100900All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales876Open in IMG/M
Ga0207540_101181Not Available816Open in IMG/M
Ga0207540_101226All Organisms → cellular organisms → Bacteria807Open in IMG/M
Ga0207540_101325All Organisms → cellular organisms → Bacteria790Open in IMG/M
Ga0207540_101545All Organisms → cellular organisms → Bacteria759Open in IMG/M
Ga0207540_101896All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium721Open in IMG/M
Ga0207540_102616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium657Open in IMG/M
Ga0207540_102726All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria650Open in IMG/M
Ga0207540_102741Not Available649Open in IMG/M
Ga0207540_103335All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria612Open in IMG/M
Ga0207540_103341Not Available612Open in IMG/M
Ga0207540_103427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium606Open in IMG/M
Ga0207540_103569Not Available599Open in IMG/M
Ga0207540_104125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium573Open in IMG/M
Ga0207540_104271Not Available568Open in IMG/M
Ga0207540_104314All Organisms → cellular organisms → Bacteria566Open in IMG/M
Ga0207540_104483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium559Open in IMG/M
Ga0207540_104730All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae549Open in IMG/M
Ga0207540_105026Not Available539Open in IMG/M
Ga0207540_105056All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium538Open in IMG/M
Ga0207540_105143All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium535Open in IMG/M
Ga0207540_105245Not Available532Open in IMG/M
Ga0207540_105303All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria530Open in IMG/M
Ga0207540_105494Not Available524Open in IMG/M
Ga0207540_105933Not Available511Open in IMG/M
Ga0207540_106281All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207540_100769Ga0207540_1007693F052029EINNTGALSEQLVTIGAASLALLVVAAIAVLMGMA
Ga0207540_100805Ga0207540_1008052F088474MELTLEIDDEGCGRLQFELPADATAEDVAYIESLVPRIETGLLELRDPGTGQVVFSCRPSLTGESLLKTATRSEVKLTH
Ga0207540_100900Ga0207540_1009003F063749RPMKSLLVLVLALAATTAAAKPSPFEPARSANPIALARTSAEFNTGPAGATRERNYFRVPEADAHSGVFLCRFEPSMFAKVRLTQSCR
Ga0207540_101181Ga0207540_1011812F079269MKKASWFFWAFVGLVWLVISLPFAGDSLKALLEFPDTPPSSQEELGKLLQNIIYAANFSILSVLVLYGLNRGWHKSDGYPKFLRRLDLQTRFTNLFENKPVLAVTNTVLALL
Ga0207540_101226Ga0207540_1012262F000569MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYLSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGKPYTLPHFLGGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP
Ga0207540_101325Ga0207540_1013252F011785YLVAALILPRRQMMKILTTFTAVAALVAGISIAQAQGTMGQTGSGMQAPQATGTGAFCIATSPGGSLNCKYASLAACEKDAKPQNLNCSPNPKKSTTGSKQ
Ga0207540_101382Ga0207540_1013821F017759LLFGVVVGLLNSECPQQDRAYESKYGADSQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSILRAMIPPAWSPRNLAVNKTHDDFGCAPNMRDRKKSKNGGHRPSRDECLEPTGHEVDAQA
Ga0207540_101545Ga0207540_1015452F010544KLHQLCVNTALGNFVGFVAGSLVMVLTTYQAVERRALKNLFGILPRETVVVHRLPEWLEWTLSVLVGYLVMELVRHVINSNKYLRLIGGTAQPKARDDGEQPRPTG
Ga0207540_101896Ga0207540_1018961F011965TYRQIFCLNPRNPSQTKFIDILKRTINGVYQSDPNWPTSAAGQTIGIHSMYGSAAGTWLDVVFLQQSWGANGDSVFNLATNTWSLVTNSDTRWSGHSSMGNGKYVNGSGSINGMDSRGALLRDPNNLMNTNQYTFIMQPPSTVGWYDGEHSSWFNSSTNPKAPVLFSRYSITAPPGTLTWYGEIIAAATDGSNRVWRFAHNHNGGLVNWVGQSFAQISNDGRWALFSSPWDGTLGSAAGD
Ga0207540_102014Ga0207540_1020141F035100MVEIRVAVPDDTCGHGLMRRLVGLFDRSSVSFDGAQRE
Ga0207540_102616Ga0207540_1026161F105951YVDAAGVWKTWGRGLLRARDGQVFRGGPAFDLRLAPGRPWRVFVFTRECDFGLLGNADGATHALAPCPTSKEFGTFDGDDVPGITVVRFASPAASLGPHRLRPRRQGSTCPVVNRLGCYEVAFRVERVGV
Ga0207540_102726Ga0207540_1027261F011676AVSVGAVSFDHRVAANVRSTFLPPDARWVDHARVGDTILIQTPATPHARAHEQLFWNRSLTRLAFLDQASPIDAFGHPRVTVADDGRLLLGEKTVRGPLTISNFAVRAQLTGAEMVARGADYELWRPHGTPRMALFVGGLYHTGWLAPAGHLTVWPARSGRVKGTLRVPLSLPAGTKRTVLHLEGPGVDRRVAVSPGQNRVVTIGVDYRGPWTLSF
Ga0207540_102741Ga0207540_1027412F094309LPHGTEASKGALVLARSVSAGKKAGANASKAGDSLVRAVGRLVNRAVDEMLLGDKRVSSAAEGRRLLAADERTESRADDIQRIIVLAVPVLRALARGARFVKLPWVIVGSTAVSVGVAVRTGVREIQVLSSLVAHRL
Ga0207540_103335Ga0207540_1033352F011315VNQRSLVAVGVALAAAAALVIAWRRYGLWPTVVGAYVCAVPLLLAATSSLQGFVDSARAALVLPLLVVLWRLGPRYHPWAAYSTVVVVLLILSGTIQSFGRQSLFAFPIFWAVADGPRVLRSPVLAGLGFAANLALVERYYPMAAQPGVE
Ga0207540_103341Ga0207540_1033412F063850MRLVAVIGVVVLVALPGMANAASVEQVFQEFGLFGMWATDCSSPATPGNPHVNITAPSAGLVLEDHDLGPDFAVNRYSVLSAEPVSQTNVSVQMIFQPGTTVEERQKLVFSVNNNTRRTI
Ga0207540_103427Ga0207540_1034271F019404PAGPGGCPFPFLVHSEGTFREAVFANGKDVTHAVDFHITYTNPANGKVLTTVLAGPFIVEPNADGTVTVTINGNDGHITAPGQGTIFAAVGKLAYIADPGDVFTPLAIVKSAGRQDPSQFPATCDGLS
Ga0207540_103569Ga0207540_1035691F032982VKSLVQQYIETRKQQRNDLMQELGLSEEEADQAVSTLELYYHIEASENQWTQAWKAAKRDFLADGERTGIRLADLVVKYVDIARLGGGPESRWT
Ga0207540_104125Ga0207540_1041251F017892ALSEAPNLPASFPMIENVTYTKQSTQGPTTVVEGFFEGSLEDAYDEYKKELEAAGFKILFDEIEEHDSEVSWEGEGRSGQVALREECGSDDKIYVHITNRPASE
Ga0207540_104271Ga0207540_1042711F055762VCLTKALHGAATGTVRMASENKEMKWLRLTICALVVGVCAGCAGGSPQQDASWKLVPITEIGMVVGEWEGLVKKDHATLPGGSVRLMIRANSTYLFAGQTATTAGVGSGDLEPRDGRLVGDTEKRAVKFTLYDHRGKTVMLVESTNHFTGE
Ga0207540_104314Ga0207540_1043141F078510RLHWDLKDFPQIADGLIAAERENRDFLLGIIGRSEKRKPLHVIPMKMSEQDNELVFLLVADGAHVPAEIAKPSSGVNNMDTPHIRERDLKTRGVAAELLEASVTDWDGTAGTVKF
Ga0207540_104419Ga0207540_1044192F101404MSETIPHDTDDVTDEARDARNEASETAAHAKDEAAEGVDRVKDGAGDVADKVSDAAEDMIPGDS
Ga0207540_104483Ga0207540_1044832F019758VATEVGPGEATKHHVGDLAEVLDNLGVFGMLAEDLVALCTSGFRRVPISQGSDYYLSIQGFTPNQIAYAHTHPDSEEWVVVLRG
Ga0207540_104730Ga0207540_1047302F026346TEGGEAASRVASIVMETDKKGRCEERQFDNRTGKMVSANYVNCDARLEPERDSTPSENINRERIRAILGAFKK
Ga0207540_105026Ga0207540_1050262F082926MPELSATEQPEQSHIVTWKVISIGTAIVLVVFLFLWL
Ga0207540_105056Ga0207540_1050561F030200EVIATCLGLLEAVEQAPVVEAEYQYEAEQAEGDLNLAADPVLRGIYESDLHRIPVAHVELVVVFVASVNSMFRSNRFCVLCLSLSTTAETKLRQQLAERKVDYRD
Ga0207540_105143Ga0207540_1051431F003059RLPKRSQRQKFLGGCMMRAGITAGMLAGAVIVTAAVPAAAQVRDAVYRGTLVCDKLPFSAGKGREAIEVTIEGGTVRYSHVVRLRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACIGTIKRPFRVFLPGEKK
Ga0207540_105245Ga0207540_1052451F020078MHSATRFCWQSGVIALATIIFAFLVPGIALCKVVSLTSIASAIAITTLVAGFGLYLAGQLIEKRTPQSERVDHYLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAG
Ga0207540_105303Ga0207540_1053032F064025TILHAKFGDGIAKQSRTSDKVPRISPGPQLPNNSVEELEAALTKARDAWRASRGRTRTAICNLRIAKRP
Ga0207540_105494Ga0207540_1054941F029216MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAAGPIADITVVTTWGATWY
Ga0207540_105933Ga0207540_1059331F014399SRRVKRTWEAMMDPVEGQARAIIAAALIIRGAVEVPAIPTATQRVPDAGGMRLRELTDYVYRLLTTDGR
Ga0207540_106281Ga0207540_1062811F097928RGWVFVPFFCHNNGINLSAKLFLSERRNSMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVFLARILERLKRA
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