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Sample 3300026975
3300026975: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M2 (SPAdes)
Overview
Basic Information
IMG/M Taxon OID 3300026975 Open in IMG/M GOLD Reference Gs0053056 | Gp0054530 | Ga0207799 Sample Name Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M2 (SPAdes) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 57625499 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae 2 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico Type Engineered Taxonomy Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Aerobic Enrichment Media → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
Location Information
Location Bioluminescent Bay, La Paraguera, Puerto Rico Coordinates Lat. (o ) 17.967317 Long. (o ) -67.018833 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F023595 Metagenome / Metatranscriptome 209 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0207799_100010 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae 388766 Open in IMG/M Ga0207799_100108 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria 98512 Open in IMG/M Ga0207799_100423 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae 16870 Open in IMG/M
