NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026789

3300026789: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026789 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0091561 | Ga0207513
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size20929890
Sequencing Scaffolds14
Novel Protein Genes16
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1
Not Available6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018205Metagenome / Metatranscriptome236Y
F022446Metagenome / Metatranscriptome214Y
F047897Metagenome149N
F048513Metagenome / Metatranscriptome148Y
F052860Metagenome142Y
F053396Metagenome141N
F054292Metagenome / Metatranscriptome140Y
F054633Metagenome139N
F060887Metagenome / Metatranscriptome132Y
F063305Metagenome / Metatranscriptome129N
F078778Metagenome / Metatranscriptome116N
F092331Metagenome107N
F095664Metagenome / Metatranscriptome105N
F099534Metagenome103Y
F101464Metagenome / Metatranscriptome102Y
F104633Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207513_100499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales736Open in IMG/M
Ga0207513_100534Not Available724Open in IMG/M
Ga0207513_100690All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria686Open in IMG/M
Ga0207513_100734Not Available678Open in IMG/M
Ga0207513_100883Not Available651Open in IMG/M
Ga0207513_100913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria647Open in IMG/M
Ga0207513_101006Not Available634Open in IMG/M
Ga0207513_101131Not Available621Open in IMG/M
Ga0207513_101132Not Available620Open in IMG/M
Ga0207513_101267All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium604Open in IMG/M
Ga0207513_101528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium579Open in IMG/M
Ga0207513_101543All Organisms → cellular organisms → Bacteria578Open in IMG/M
Ga0207513_102182All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria533Open in IMG/M
Ga0207513_102196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium532Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207513_100012Ga0207513_1000121F095664GTLPGGEIWSNSLRLASTDTGPDADVPDHDAMVEWLTTYAKDAVAAWHGSFDLKCSNQAKLAYLKMNVVDIAGRYIEQNTLEYLYSPVVPGGSASNIHPTQIALAVSLTTEFSRGHAHRGRFYVPMPVHVVDATTGLISVSDAIQVATAAKTFIEALADEPGPDILPGMRVCVMSQRGTGATNVVTGVDVGRVLDTQQRRRNALKETYQHVTVDQGAS
Ga0207513_100499Ga0207513_1004993F060887MIVAAWICLLTPLGAALLITLCGTRLSRRGAGYLATVSVAVSFVAA
Ga0207513_100534Ga0207513_1005341F099534MEGNTMGKYGTGVGMTDVAAMMKAIEAMHECRVSYHVTTRGQGHNGSMLIVCAAHFDVLPGSDRPKAIDVEHIWPSKVAATFDGLCYNLLWQLDYAIQQAYEQMPLEPK
Ga0207513_100690Ga0207513_1006902F054292LDGGTYSSGGAWKPSPQIGMLGGVLPLLTASVSFRFTAVDGAAAIDDVYLDPMKSS
Ga0207513_100734Ga0207513_1007341F101464MSFLQSGMLMALAPLALLPLLAASWAFSDVATRSEMSNTDSRLNAALRVAINDYSRRVRVDLAGTASSLAHATSVQQAFQTRNRAALVRLARSVPDAAFYINDQLVAGEAPGGLHVERSSSVFNEDGALIGRIVVWFPLDRTLLAQLRIAAGLTHPDRVLLAQNGKVLTGP
Ga0207513_100883Ga0207513_1008831F018205SLPQDERPAARRSPNRRRVALVAVALAATAILATTAFAVANWFGDVVKPAVTKQEYKTAQSELTLPPGVTWPELNVDPNSVTSRGGGGSSAVMVAMGSWECYWADAIKSGDEQAQQRAHAELNSLFANHVVIAPAGASENWFPTGHPFPVVAFADDGGYQYKQQMYADAAAGRPKTLFQSCRANSP
Ga0207513_100913Ga0207513_1009131F053396MTGLGVLNADYQSGAVRAKDVSQQAFDSAVRIQHTDPKDPSLKTAQRYLDAMFQEYGTALTIQAKGGDAGERMYRAYGLANFAHDVLTQAQPALYKRGCDVGPLL
Ga0207513_101006Ga0207513_1010062F022446MSAALPSPPAPSPRGRNPLPVEALQNHLGGLLREREELRAADSPLALERNRREIVRMQWELTYALID
Ga0207513_101131Ga0207513_1011312F054633TSACGGSGHEDHARSLYDAYRTAEDARTDAEEELRLAFADISSAAQKLDRAAVIAAAQRGQDAVEKIDDLIGAEIEAAQGLAEIESTAPPAKQLAEGLQLSRDSLALVAKELEIALDDPFLDTRKKELDDLAKESADLAVQGELEVRRADRALAEALGLEPRLDQMFTTTTG
Ga0207513_101132Ga0207513_1011322F052860WFSDSRFAAVLPKGVLVIVQGGRVLVRADLPPFRTAWLELSPQRSFATLWLDGELAGTFDSGGGPLPLAPVGEVSSLAWAPSERWVLAATRDGTVFLLRPDTGDARVRRLGIAARDLAWR
Ga0207513_101267Ga0207513_1012671F063305VSLRPVRSTESASGRAKPERRFVSRETARLLPIVVPVALSGFAVLAFAIGRFAASNPEPEVLAGVFALLLAATFVEAHPVPIEGISSEGISLAAVFIVGTAVIYGWAPAVVMGFLTRALIEMFQRRPAIRLSYNS
Ga0207513_101528Ga0207513_1015281F047897RRKPQTGSSRAVETFRFICYLDRVPPHILEDPAFRMLPEHGEVECELEAEDFAGAVAEAIRTLEVDFVHVRGIERL
Ga0207513_101543Ga0207513_1015431F104633LRFGVPALIALALVAVGAAASAARVLRKDIVSRWTARIGSTALRKGMHSGNRAWFYLAAGATGVRLAHKYLGRKEEVFSVRL
Ga0207513_102182Ga0207513_1021821F048513AARSGNESGDGLVWTSPVENVTHNRTGTRLEREVQPS
Ga0207513_102196Ga0207513_1021961F092331NVALLAAPSNDRGFTTEQLFWNRSIDRLLVLPDASPPDAFTFEQTTIGEDGSILVGGTPYTGPLLVDAYSATSELRGATQVARTRIYRLWKPEGTPRLSLYVVNRFYDGWLGLTGSIKLWPDEGQRLAGRLNLALSLPADLIETEMRLKLPDGSVKEVDIKPGEVVPVSMAVCSSGP
Ga0207513_102369Ga0207513_1023691F078778EDGYSLVIAMLLLSIMMVLLAVSLNAGNASLRQSGLSIEWSKSLTVAEAGVNQAVTLLGQSRGATNPCRISTSTVCSGGGGEYQVSWTTSHGTVLVSSIGYFPTKADPTFVREVQVTYEPVPSFKYAIYSQTSLSVANNMTVIGDVYSAGDVTLGNGASVCGSVTSSGGGVSF
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