Sample 3300026788

Overview

Basic Information
IMG/M Taxon OID	3300026788 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0091559 \| Ga0207579
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07.2A5-10 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	14163197
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia elaeagni	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009543	Metagenome / Metatranscriptome	316	Y
F021340	Metagenome	219	Y
F028554	Metagenome / Metatranscriptome	191	N
F029488	Metagenome / Metatranscriptome	188	N
F033787	Metagenome / Metatranscriptome	176	N
F050525	Metagenome / Metatranscriptome	145	N
F050726	Metagenome	145	Y
F068095	Metagenome	125	Y
F070071	Metagenome / Metatranscriptome	123	N
F084203	Metagenome / Metatranscriptome	112	N
F098176	Metagenome	104	N

Family

Category

Number of Sequences

3D Structure?

F009543

Metagenome / Metatranscriptome

316

F021340

Metagenome

219

F028554

Metagenome / Metatranscriptome

191

F029488

Metagenome / Metatranscriptome

188

F033787

Metagenome / Metatranscriptome

176

F050525

Metagenome / Metatranscriptome

145

F050726

Metagenome

145

F068095

Metagenome

125

F070071

Metagenome / Metatranscriptome

123

F084203

Metagenome / Metatranscriptome

112

F098176

Metagenome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207579_100053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1150	Open in IMG/M
Ga0207579_100192	Not Available	864	Open in IMG/M
Ga0207579_100235	Not Available	821	Open in IMG/M
Ga0207579_100241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia elaeagni	818	Open in IMG/M
Ga0207579_100293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	781	Open in IMG/M
Ga0207579_100404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	727	Open in IMG/M
Ga0207579_101110	Not Available	557	Open in IMG/M
Ga0207579_101230	Not Available	542	Open in IMG/M
Ga0207579_101260	Not Available	539	Open in IMG/M
Ga0207579_101325	Not Available	532	Open in IMG/M
Ga0207579_101537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	510	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207579_100053

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

1150

Open in IMG/M

Ga0207579_100192

Not Available

864

Open in IMG/M

Ga0207579_100235

Not Available

821

Open in IMG/M

Ga0207579_100241

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia elaeagni

818

Open in IMG/M

Ga0207579_100293

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

781

Open in IMG/M

Ga0207579_100404

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei

727

Open in IMG/M

Ga0207579_101110

Not Available

557

Open in IMG/M

Ga0207579_101230

Not Available

542

Open in IMG/M

Ga0207579_101260

Not Available

539

Open in IMG/M

Ga0207579_101325

Not Available

532

Open in IMG/M

Ga0207579_101537

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis

510

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207579_100053	Ga0207579_1000532	F021340	MVVFRTDQGFFIKFSKAVCPLNKRHSKLQTFQAHRTIARANVARSQFWHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK
Ga0207579_100192	Ga0207579_1001922	F050525	MRGFAGLLVYLVGVSAVFSIGIVGLMALQSPAERTPSSPPVAAASHAESLAKPVKRPVDDKKTAHRNQKHKKEHVTRKQPHEAPFTDAGRNAYGYAEELRRIDPNRFLFFGR
Ga0207579_100235	Ga0207579_1002351	F070071	MLTIIGATLVAGTSAGFWYLLPRNGKEHPLVQNNGVGSMITIVILTLFIV
Ga0207579_100241	Ga0207579_1002411	F050726	AIGALLLALGRDPGVTLIETDRWTLAEELWSFGEDSLYPVALRLSDEDMVRLWLLAGGLLVKERARSSGEATALAAVVVIEGNQRPLARKRRRPQPNRLRFEQTPEERYAEISRIEDSPSFDEKWR
Ga0207579_100293	Ga0207579_1002932	F009543	VAKATYLRSEPEVTEMLRIWLMAMLAAAMFGVVRHTDVLHRAGLTGYCTTAPHPAGTTGHWRVCEKGVLNGRPDLSRQRCTRRGQDGSVEYWRCPARVRSAALG
Ga0207579_100404	Ga0207579_1004041	F084203	MRARVRRAMWMLGALALAVPASAQESTDVAPLTPEDSALLANALVFDPAALVTAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPLQTEWSNSVGADLAPSRPATYPLPLPTEHNNGLPAGAAWASVGVPNLASLD
Ga0207579_101110	Ga0207579_1011101	F029488	MHPITLTTFAVLLLAGCAGYSPECVTGTGTKDCASGTLGHQQMTQEREGDETVASIDDARCRAHAAPGSSEYLACRQRAAKSRGAGR
Ga0207579_101230	Ga0207579_1012301	F028554	MRKAKQVRNRALSAGEGRRAIIVTAALTGLFLLAAFVTAGSFLSTDPQAMSSVAKVTPLPRTEGGEAASRVASIVMETDKKGRCEERQFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK
Ga0207579_101260	Ga0207579_1012601	F098176	STAAQLPPQCALVASYRNTSETLVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRSAMNELNTALEGITDADPIFAPQGLAIVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQASS
Ga0207579_101325	Ga0207579_1013251	F068095	TTQEPPMRDWLFLLAPPALIFYFIAYPDKFYEFVFWAKRLIG
Ga0207579_101537	Ga0207579_1015371	F033787	EAAMRLNLKLSMLGCALAGVIASSLPAAADWHKPYIYRESNGSWTNVRYDDGVCNYYFSRNSYDNNMHLNKYGDCSHVAIGPDGMARPVYLTPTPYGAVETYGSGLE

Scaffold ID

Protein ID

Family

Sequence

Ga0207579_100053

Ga0207579_1000532

F021340

MVVFRTDQGFFIKFSKAVCPLNKRHSKLQTFQAHRTIARANVARSQFWHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK

Ga0207579_100192

Ga0207579_1001922

F050525

MRGFAGLLVYLVGVSAVFSIGIVGLMALQSPAERTPSSPPVAAASHAESLAKPVKRPVDDKKTAHRNQKHKKEHVTRKQPHEAPFTDAGRNAYGYAEELRRIDPNRFLFFGR

Ga0207579_100235

Ga0207579_1002351

F070071

MLTIIGATLVAGTSAGFWYLLPRNGKEHPLVQNNGVGSMITIVILTLFIV

Ga0207579_100241

Ga0207579_1002411

F050726

AIGALLLALGRDPGVTLIETDRWTLAEELWSFGEDSLYPVALRLSDEDMVRLWLLAGGLLVKERARSSGEATALAAVVVIEGNQRPLARKRRRPQPNRLRFEQTPEERYAEISRIEDSPSFDEKWR

Ga0207579_100293

Ga0207579_1002932

F009543

VAKATYLRSEPEVTEMLRIWLMAMLAAAMFGVVRHTDVLHRAGLTGYCTTAPHPAGTTGHWRVCEKGVLNGRPDLSRQRCTRRGQDGSVEYWRCPARVRSAALG

Ga0207579_100404

Ga0207579_1004041

F084203

MRARVRRAMWMLGALALAVPASAQESTDVAPLTPEDSALLANALVFDPAALVTAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPLQTEWSNSVGADLAPSRPATYPLPLPTEHNNGLPAGAAWASVGVPNLASLD

Ga0207579_101110

Ga0207579_1011101

F029488

MHPITLTTFAVLLLAGCAGYSPECVTGTGTKDCASGTLGHQQMTQEREGDETVASIDDARCRAHAAPGSSEYLACRQRAAKSRGAGR

Ga0207579_101230

Ga0207579_1012301

F028554

MRKAKQVRNRALSAGEGRRAIIVTAALTGLFLLAAFVTAGSFLSTDPQAMSSVAKVTPLPRTEGGEAASRVASIVMETDKKGRCEERQFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK

Ga0207579_101260

Ga0207579_1012601

F098176

STAAQLPPQCALVASYRNTSETLVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRSAMNELNTALEGITDADPIFAPQGLAIVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQASS

Ga0207579_101325

Ga0207579_1013251

F068095

TTQEPPMRDWLFLLAPPALIFYFIAYPDKFYEFVFWAKRLIG

Ga0207579_101537

Ga0207579_1015371

F033787

EAAMRLNLKLSMLGCALAGVIASSLPAAADWHKPYIYRESNGSWTNVRYDDGVCNYYFSRNSYDNNMHLNKYGDCSHVAIGPDGMARPVYLTPTPYGAVETYGSGLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026788: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07.2A5-10 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences