NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026769

3300026769: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026769 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072054 | Ga0207492
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size15715682
Sequencing Scaffolds28
Novel Protein Genes29
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2
Not Available10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14621
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F000569Metagenome / Metatranscriptome1018Y
F001627Metagenome / Metatranscriptome661Y
F002103Metagenome / Metatranscriptome593Y
F007536Metagenome / Metatranscriptome349Y
F011517Metagenome / Metatranscriptome290Y
F017538Metagenome / Metatranscriptome240Y
F020078Metagenome / Metatranscriptome226Y
F020931Metagenome / Metatranscriptome221Y
F021340Metagenome219Y
F026346Metagenome / Metatranscriptome198Y
F026499Metagenome197N
F029216Metagenome / Metatranscriptome189Y
F034564Metagenome / Metatranscriptome174Y
F038467Metagenome / Metatranscriptome166N
F041750Metagenome / Metatranscriptome159Y
F048418Metagenome / Metatranscriptome148Y
F050353Metagenome / Metatranscriptome145N
F050525Metagenome / Metatranscriptome145N
F058266Metagenome135N
F063910Metagenome / Metatranscriptome129N
F068085Metagenome125Y
F070071Metagenome / Metatranscriptome123N
F071715Metagenome122N
F079360Metagenome / Metatranscriptome116N
F083399Metagenome113N
F094116Metagenome106Y
F095845Metagenome105N
F103539Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207492_100030All Organisms → cellular organisms → Bacteria2081Open in IMG/M
Ga0207492_100035All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2052Open in IMG/M
Ga0207492_100061All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1785Open in IMG/M
Ga0207492_100196All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1367Open in IMG/M
Ga0207492_100254All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1295Open in IMG/M
Ga0207492_100298All Organisms → cellular organisms → Bacteria1234Open in IMG/M
Ga0207492_100713Not Available934Open in IMG/M
Ga0207492_100855All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria887Open in IMG/M
Ga0207492_100991All Organisms → cellular organisms → Bacteria840Open in IMG/M
Ga0207492_101169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium796Open in IMG/M
Ga0207492_101274All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462768Open in IMG/M
Ga0207492_101281Not Available767Open in IMG/M
Ga0207492_101438Not Available734Open in IMG/M
Ga0207492_101488All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales726Open in IMG/M
Ga0207492_101588Not Available708Open in IMG/M
Ga0207492_101638Not Available699Open in IMG/M
Ga0207492_101749All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium680Open in IMG/M
Ga0207492_101785Not Available676Open in IMG/M
Ga0207492_101786Not Available676Open in IMG/M
Ga0207492_101817Not Available672Open in IMG/M
Ga0207492_102090Not Available639Open in IMG/M
Ga0207492_102137All Organisms → cellular organisms → Archaea634Open in IMG/M
Ga0207492_102625All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis586Open in IMG/M
Ga0207492_102951All Organisms → cellular organisms → Bacteria561Open in IMG/M
Ga0207492_103014All Organisms → cellular organisms → Bacteria556Open in IMG/M
Ga0207492_103332Not Available535Open in IMG/M
Ga0207492_103407All Organisms → cellular organisms → Bacteria530Open in IMG/M
Ga0207492_103858All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207492_100030Ga0207492_1000301F007536NMRLAMDMLNLHLRLIQSALGQKAGAKPMGLPHRESSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR
Ga0207492_100035Ga0207492_1000354F026346IVMETDKKGRCEERQFDNRTGKMVSANYVNCDARLEPERDSTPSENINRERIRAILGAFK
Ga0207492_100061Ga0207492_1000613F063910DLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207492_100196Ga0207492_1001961F068085FTCLGIGLALCVGVISILRSPPDNGPPAWFAAAFGAMFFWGAFALARWRLQ
Ga0207492_100254Ga0207492_1002541F021340RSQFCHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK
Ga0207492_100298Ga0207492_1002981F020078IALATIIFAFLVPGIALCKVVSLTSIASAIAITTLVAGFGLYLAGQLIEKRTPQSERVDHYLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAGCGVAGALLLIRRARRLAANGSNLAKSTN
Ga0207492_100713Ga0207492_1007131F038467MIYSLDTHYMWTLELSNPSWNFPSGSKFDVSFGNRERGYFRQRVAALDPQLVRVLLPDSMNSFEAFRRLFKLDVVAGGLTTQFDLAYANQVLLALTQCVTKFGMTTKSKAAITAYLKSPIGPAAEANSDPAIVQEAFSLAGAIVAEGEIAKAAALKPDEIPDGVSGDTVWKVADNLFTISVLPKDAVPAEIGDLNDLIVGGDAQKCRGDFFAGAMLDVVESLTVARAYTNCRTQQAETSTYYFAMPRKSGGLYLLKTIATGVEVTPAGDRTIKELDAKVRGALTVVLAKR
Ga0207492_100855Ga0207492_1008552F048418MPIHLPHKARAKAAPARRQAAAHAIDWLGLWALSLGFCAIVLAGIAYFTIGDNIGASSILMGAAAIIAVIVRFGADRDQARDGN
Ga0207492_100991Ga0207492_1009911F094116VLGQEDIQNLPGFEEAFDVAATQIRVADLEERTGLDFGDIKKFDHFAAGGASGTLELPSIEGIVQRAKIVRNGNDIVV
Ga0207492_101169Ga0207492_1011691F029216MYMLIVVIGVLSQGASVLPVGVTSQVVGKFKNLDECKAAAKQPHAAGPIADITVVTTW
Ga0207492_101274Ga0207492_1012742F041750MLKAPTDTDLLRLRQFLRRLEADANEAVEDAEFCRREIDRLKREIAYLEAARSRAFLAQIGIDFGAAGS
Ga0207492_101281Ga0207492_1012811F026499LTEVLELHNVQQRQANELQDRYDDIDRLSQTVSALQEAVNQYKMGTAAAEDKIILLESEKAVLQAQLDVALEESKTLADRVHAAEAASDRREATVALSIKQIEFLNTELTAAAAERFRLVATMQGEQRRQRSVFSQQKSILEDKLQEKEALAATQGTKIKQLEGVRDELDKRVRVIEALLASEREVAERKTRRPTEILGAAG
Ga0207492_101438Ga0207492_1014383F103539GRRRPRNRGSEILMSIEGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207492_101488Ga0207492_1014881F034564GFGLLGERRPFGQSILAHPFIVYAFVAAAGLLVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLVGR
Ga0207492_101588Ga0207492_1015882F070071GMLTIIGATLVAGTSAGFWYLLPRNGKEHPLVQNNGVGSMITIVILTLFIVGIAVMCEGLLS
Ga0207492_101638Ga0207492_1016382F017538MARTPMPASLTLVRASRNRDGEWSSDDYDVFEGKQLVGRVTLTPQAPEGRPWFWMITARPESSQNQGYAVSREQAMLEFNARWLNPARL
Ga0207492_101749Ga0207492_1017491F002103MSTDEPFRTDYEFLKEVDYIFVSLDRNLSSEECHELAEKYFETHKGMTLPGQALRVDLRPAFGKPLADVTPKFRAVSIGYTFTPQR
Ga0207492_101785Ga0207492_1017852F000569MDLHIKKVWLPGAAACLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGTPYTLPHFLGGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP
Ga0207492_101786Ga0207492_1017861F083399MVEESAVSGDARPWGFFATFVLGAIALLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAIGDAMSWLAGRSVVDRFRADEVSFL
Ga0207492_101817Ga0207492_1018171F050525MRGFAGLLAYLAGVSAIFGIGIVGLMALHSPTGRTPSSPPVAAAEPLAKPAKRPLDDKKTAHRNQTHKKVHVTRKQHEAPSIDAGRNAYGYAEEL
Ga0207492_102090Ga0207492_1020902F071715MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGTGYYGGYYDGYDYGPRYRSYA
Ga0207492_102137Ga0207492_1021371F020931LSPRFGFFKRKTPDYFHDKESQANSVHSVSNKELLEIVENEKKVLQKDLIDNLEPTRNLVLDCLNRLRKNADELEEQEIKAESPQFESLINTSKKILITSIKKESLIESYQIKSYEDAIKFKNNLELLINRFGQVGDSHNRILNEFMRKQINKLKSEFDNLSSLLKTVTKIISTKENQINSCIQ
Ga0207492_102625Ga0207492_1026252F079360MRRTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYRGMNTLPVAEIPQP
Ga0207492_102951Ga0207492_1029511F058266AVAMKNDTLLIVFVTLYLMVIAALLIKDAPRPVALEDKAPVAEVEKAPIAKEAASPQADDSSKPGSAPDCEKELRRTADLLRFFANRIQGGEDTQSVVADMRQQEKKISAVCD
Ga0207492_103014Ga0207492_1030141F011517LIRSARTGCASVVFDPMTNRKRLFSISGIELVLAPLPNDLTRP
Ga0207492_103332Ga0207492_1033322F050353VALVVAGVLLNVLASRSTTVANSQAAQRSAQNGTIVYGLHVALPSNMKNFPPELVPLP
Ga0207492_103401Ga0207492_1034011F001627RFWMHLSPREKSQTLRGPDVWCVPVSPIRSALSQLAESGADAPRREARNILLNYTRRLEGSDAAVRRSVAVGLSELSAVVESLWPNQLPEELSRCALQTLEQEAAPDTAALLSAFLEMLGRVAVTRGDFAGLENILLCLEKAPREPQFEHMHALAERLIAQDRWHLLVDAALANRA
Ga0207492_103407Ga0207492_1034071F000268MLMRVVAVMLLLSAGIAAEAVSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDQ
Ga0207492_103858Ga0207492_1038581F095845TALYRESQIRGALLSLGAVDDLGDWVRLRSGRLPHVCRPERCEVLVIRRALGRIPNVPGLRLVPVGQGDLRTAALFGDAVPAEGLDQSSFVQKISRYHRPAPPPLLLANGVAGLDSSPRLHDTYRSYGWAVPLQRGSVRSWSADDLVTRIEQARTAFQSSNFGFELSA
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