NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300026764

3300026764: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026764 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072055 | Ga0207470
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size15355255
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001033Metagenome / Metatranscriptome799Y
F007536Metagenome / Metatranscriptome349Y
F010565Metagenome302Y
F017145Metagenome / Metatranscriptome242Y
F024545Metagenome / Metatranscriptome205Y
F029216Metagenome / Metatranscriptome189Y
F038480Metagenome166Y
F040185Metagenome162N
F048397Metagenome / Metatranscriptome148N
F054450Metagenome / Metatranscriptome140Y
F055072Metagenome / Metatranscriptome139N
F078804Metagenome116N
F079360Metagenome / Metatranscriptome116N
F092662Metagenome / Metatranscriptome107Y
F099400Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207470_100048All Organisms → cellular organisms → Bacteria1728Open in IMG/M
Ga0207470_100087All Organisms → cellular organisms → Bacteria1491Open in IMG/M
Ga0207470_101068Not Available786Open in IMG/M
Ga0207470_101127All Organisms → cellular organisms → Bacteria → Proteobacteria773Open in IMG/M
Ga0207470_101272Not Available740Open in IMG/M
Ga0207470_101280All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium738Open in IMG/M
Ga0207470_101543Not Available692Open in IMG/M
Ga0207470_101698Not Available668Open in IMG/M
Ga0207470_101850Not Available650Open in IMG/M
Ga0207470_102614Not Available571Open in IMG/M
Ga0207470_102794All Organisms → cellular organisms → Archaea556Open in IMG/M
Ga0207470_102825Not Available553Open in IMG/M
Ga0207470_102853Not Available551Open in IMG/M
Ga0207470_103061All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae535Open in IMG/M
Ga0207470_103616Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207470_100048Ga0207470_1000481F099400LTIVRHPCPMRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRAFGLHLFG
Ga0207470_100087Ga0207470_1000871F007536ALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR
Ga0207470_101068Ga0207470_1010683F079360MRQTLTVAAIAVLVFAAIAELVAAPSRHAAGRDTSVQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207470_101127Ga0207470_1011272F038480MKAILVSIVLYFAATAAHSMPISVLNANGLSATIPISDQCGDRCGSSRSYVKDRRSGVGGYSGGYVLVRDPLIQRRPFCPFGSYVACIASGAFCIDLCH
Ga0207470_101272Ga0207470_1012721F040185PTPVVVVTDTIGAADSALPLSMKVTSYVPDTNIVLKGLAVGTTLTSGASVGDREWRINIEDLQNAYVIPPQGFVGPMAFVAELRDIDGHPLLRAPGQFTWTAVDPSSATAGKEPAEEEPPVTAVASAADAGNQQLIGQFVGQKEEVVLPKPRPIKHASLGGKATKPKKQIARAHGYKERMPRRDLGADTRWASNELPPHSLFSEPDRRRERRAIVDGIFRSLFYGGDANECEPATLERGTQKKSGD
Ga0207470_101280Ga0207470_1012801F001033MCGPSLIVRLTIAVFVFLILGVASVIHAERPDSTAGTSNAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDAKIVFNTSYHFPAPRP
Ga0207470_101543Ga0207470_1015432F029216GCTTLGGSAMYMLIVVIGVLSQGASVLPVGVTSQVVGKFKNLDECKAAAKQPHAAGPIADITVVTTWGATWYCTYSGTN
Ga0207470_101698Ga0207470_1016981F017145MAARKSSHRHWMLRDIPRTYVLVVWLAFGAALLIYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE
Ga0207470_101850Ga0207470_1018501F092662RIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVDRVLALRTTSTDQLILMVCDKPERDAYLVAARLAFEGRAGNLTMSAKGR
Ga0207470_102614Ga0207470_1026141F024545DRMARPKKPKVQIKRTKTSLGWAYRIYLDGHYMGTGLTQASAREGAKRMFVTYERGRQMRRPLT
Ga0207470_102794Ga0207470_1027941F054450MHDSLYGNYPLSNKHRPTPTVRPVNRSKEQLQEFRDIISNPRTSQDSKKRFMVEKGGG
Ga0207470_102825Ga0207470_1028253F010565MSDARHEVDERWILRTELLWAFGVGVFIAAALGMILFT
Ga0207470_102853Ga0207470_1028531F055072PNLRSGKNRAASFLIWFISGLYLLGMVWFLLSTVGDYSAQDTPPWLVSAVGACTVSYGILMVMFWPFENVSPEGRPERPVR
Ga0207470_103061Ga0207470_1030611F048397VHNSTIFRAILEKNKCDKCNLTIHPNFMGNHKCDHQNCPICKNPITPSQYWPHIRSHPGHENDSPPLPKRNMYENRNNENHSGYGNYQRN
Ga0207470_103616Ga0207470_1036161F078804KIFAEREVGMNFVYATLCSVAVLVLCGATAPAFGYVKKAPTNQSAGKAIKKQASVFDSDGYRLVSPNSTMRCAQTLRGTLDCKE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.