| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026719 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072063 | Ga0207438 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-11 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 17891687 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000569 | Metagenome / Metatranscriptome | 1018 | Y |
| F001033 | Metagenome / Metatranscriptome | 799 | Y |
| F001757 | Metagenome / Metatranscriptome | 641 | N |
| F007536 | Metagenome / Metatranscriptome | 349 | Y |
| F020078 | Metagenome / Metatranscriptome | 226 | Y |
| F025757 | Metagenome | 200 | N |
| F032172 | Metagenome / Metatranscriptome | 180 | Y |
| F034172 | Metagenome / Metatranscriptome | 175 | Y |
| F034995 | Metagenome | 173 | N |
| F048216 | Metagenome / Metatranscriptome | 148 | Y |
| F048418 | Metagenome / Metatranscriptome | 148 | Y |
| F051439 | Metagenome / Metatranscriptome | 144 | N |
| F053375 | Metagenome | 141 | N |
| F063910 | Metagenome / Metatranscriptome | 129 | N |
| F068085 | Metagenome | 125 | Y |
| F073765 | Metagenome / Metatranscriptome | 120 | N |
| F097649 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207438_100073 | All Organisms → cellular organisms → Bacteria | 1204 | Open in IMG/M |
| Ga0207438_100081 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1187 | Open in IMG/M |
| Ga0207438_100099 | Not Available | 1134 | Open in IMG/M |
| Ga0207438_100240 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 934 | Open in IMG/M |
| Ga0207438_100257 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 923 | Open in IMG/M |
| Ga0207438_100508 | All Organisms → cellular organisms → Bacteria | 780 | Open in IMG/M |
| Ga0207438_100821 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 693 | Open in IMG/M |
| Ga0207438_100841 | Not Available | 689 | Open in IMG/M |
| Ga0207438_101220 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 627 | Open in IMG/M |
| Ga0207438_101794 | Not Available | 563 | Open in IMG/M |
| Ga0207438_102034 | Not Available | 543 | Open in IMG/M |
| Ga0207438_102173 | Not Available | 532 | Open in IMG/M |
| Ga0207438_102343 | Not Available | 522 | Open in IMG/M |
| Ga0207438_102466 | Not Available | 514 | Open in IMG/M |
| Ga0207438_102496 | Not Available | 512 | Open in IMG/M |
| Ga0207438_102556 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207438_100073 | Ga0207438_1000732 | F007536 | TCFVNMRLAMDMLNLHLRLIRSALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR |
| Ga0207438_100081 | Ga0207438_1000812 | F063910 | MSKRYNLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN |
| Ga0207438_100099 | Ga0207438_1000992 | F034172 | LMRTIFVFLVAGLIVLLGGASYAADVRLDHKRAHARGAGTFDQRLRVVEQRPYCGNCEAPFGRTHSANVVRLRFINWPYWQESCAAGACGEYYPVMRSCVFWGLGCT |
| Ga0207438_100240 | Ga0207438_1002402 | F001757 | MMRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVFRGRPDRPDRTKVV |
| Ga0207438_100257 | Ga0207438_1002571 | F068085 | IGLALCVGVISILRSPPDNGPPAWFAAAFGAMFFWGAFALARWRLQ |
| Ga0207438_100508 | Ga0207438_1005081 | F051439 | GLINDAKPYPTLAAAMQVAGLSLKTGSATTAWIEDDHGNVCANTDDVKKHCGLT |
| Ga0207438_100821 | Ga0207438_1008211 | F048418 | SVQTFDGTPAAAYLNQSSHQFAASFQGTCKENLRYINVATGFAGKSNREDDSKIGDVRMPIHLPPKARVKAVPARRQAAINSIDWLGLWALSLGFCAIVLAGIAYFTIGDNIGASSILMGAAAIIAVIVRFGADRDQARDGN |
| Ga0207438_100841 | Ga0207438_1008411 | F097649 | MINAEAVNSVTERKPGGRPSILTKDVMAGIPVLVQQGLNTEAIAARLGCTAGTLKVRCSQAQISLRLPKEVKVVPLVPLAPAAPAPKPTQSKRCFAFAVPTTLQLSRVAM |
| Ga0207438_100981 | Ga0207438_1009812 | F048216 | MSPSALNPTTEVIKVVCLMSLEEMPRDVKALEERIIEKVQQSGREFYAAVFYAFERRWLQERGGDYTAVRWRTINQVTPFGLIRLPVRVVRERGAQKGGYLSLSKALFKPKATRLLSPWVEKGV |
| Ga0207438_101220 | Ga0207438_1012202 | F073765 | IPIKGQKLMEEVYLSEQIRCLECQKTVPIGVEVVRVQKEGQAKKVLKRVFYCRSHAGDYESRARGEG |
| Ga0207438_101794 | Ga0207438_1017941 | F034995 | MTKILALIAGIFLIGFPAWMLKEMSVPLPQYRKGGYADYVLLAYELLAVYGSVLLGIAVHVGRAKWSGQSLFPFGLFKAGMWGVLVAASAYFVAGGVYGLISYGAFDKVIGGTLWGLLAIFWGVFGALVSAGLALLFYAWRGSAGYQPPG |
| Ga0207438_102034 | Ga0207438_1020342 | F053375 | MHVTPLSAATILAFASPLHAQGIEVFGGYSVNADYVQNRPAILVADQKVSPFFSHGSGPTGFEASLKHAVRNGLGIKVDVSGYSDTFPPGPAAYCQPDNSVSGITCGTGLTFQATGRAFYVTAGPE |
| Ga0207438_102173 | Ga0207438_1021731 | F020078 | MHSATRFCWQSGAIALAAIIFAFLVPGVALCKLVSLASIASAITITTFVAGFGLYLAGHLIEKRDPQCERVDHYLQASIPVTGAGLLWLHVILQTGPWRDRSIEPGVAVVIVVACGVAGALLMIRRAKRLAGD |
| Ga0207438_102343 | Ga0207438_1023431 | F000569 | MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERILSALFPVFAFVALFAVRIVYGLFFEGHPYTLPHFLGGLSVTLVFIIVGGLLLILGAWPFCRPHFREQLPR |
| Ga0207438_102466 | Ga0207438_1024661 | F025757 | HRPSPCPYLIENHRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLT |
| Ga0207438_102496 | Ga0207438_1024961 | F032172 | QLEGEEPVQIIRGRFGPSGGIVPELDKDGQVVPTGHFNNRLGFHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF |
| Ga0207438_102556 | Ga0207438_1025561 | F001033 | EGHRNIKLLIMKNKRPCPVLAFVATIAVFVFQMLGVTSGVHAEKPDSTVETSSVDERKLVIGPSSTSVALGKASLIVSPLTHRDGSYVGDYQLKVKPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDCRTHIVLGRATPSSRDRGSVTFSIVTDDARIV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |