| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026714 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072077 | Ga0207567 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 16099465 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000268 | Metagenome / Metatranscriptome | 1411 | Y |
| F001033 | Metagenome / Metatranscriptome | 799 | Y |
| F007536 | Metagenome / Metatranscriptome | 349 | Y |
| F009830 | Metagenome / Metatranscriptome | 312 | Y |
| F017166 | Metagenome / Metatranscriptome | 242 | Y |
| F019378 | Metagenome | 230 | Y |
| F050608 | Metagenome / Metatranscriptome | 145 | N |
| F064215 | Metagenome / Metatranscriptome | 129 | Y |
| F083399 | Metagenome | 113 | N |
| F097305 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207567_100011 | All Organisms → cellular organisms → Bacteria | 2120 | Open in IMG/M |
| Ga0207567_100026 | All Organisms → cellular organisms → Bacteria | 1484 | Open in IMG/M |
| Ga0207567_100162 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 848 | Open in IMG/M |
| Ga0207567_100351 | All Organisms → cellular organisms → Bacteria | 726 | Open in IMG/M |
| Ga0207567_100525 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 671 | Open in IMG/M |
| Ga0207567_100759 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 619 | Open in IMG/M |
| Ga0207567_101165 | Not Available | 561 | Open in IMG/M |
| Ga0207567_101250 | Not Available | 553 | Open in IMG/M |
| Ga0207567_101528 | Not Available | 531 | Open in IMG/M |
| Ga0207567_101821 | Not Available | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207567_100011 | Ga0207567_1000112 | F007536 | VEELTCFVNMRLAMDMLNLHLRLIRSALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR |
| Ga0207567_100026 | Ga0207567_1000262 | F001033 | MCGHSLIARLTIAVFVFQMLGVISVVHAERPDSTAGTSRAGTRKLFIDPSSTSLALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP |
| Ga0207567_100162 | Ga0207567_1001621 | F050608 | MRLRIRTILCYTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLTSRGENAKD |
| Ga0207567_100351 | Ga0207567_1003511 | F000268 | MLMRVVAVMLLLSAGIAAEAMSYSFVSKARGRLGGPIRFEFYRDSTTLPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTHPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR |
| Ga0207567_100525 | Ga0207567_1005251 | F064215 | MDDKLATDEARRSVQHETVKAQVEGEVQSEIADRASQGPPPGEAAKIDQVAGQFRSKAVNEVVDTEREVERGRG |
| Ga0207567_100759 | Ga0207567_1007592 | F009830 | DERLARVVRIIVEQYDGDVKAFVESNRYRIEANRRTEAASDHGDEAALRKCPPTTKIIGRISRVHYS |
| Ga0207567_101165 | Ga0207567_1011651 | F083399 | MVEESAVSGDARPWGFFATFVLGAIALLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAIGDAMSWLAGRSVVDRFQTDIYQAANSVGQLPLLLTA |
| Ga0207567_101250 | Ga0207567_1012503 | F019378 | VQREMIATAAERIKPKEPVPPERVFDFSFIQKVRGSVR |
| Ga0207567_101528 | Ga0207567_1015281 | F097305 | AMENEKSGKDRKPDSRSQRLAAELRENLRRRKAQVRGRKAPAAGEGTKRPGLPPRGG |
| Ga0207567_101821 | Ga0207567_1018212 | F017166 | MVFTGWLYLGEKDAVRSTKADVAAAADRTAVALSQSADPERNTDADAEDVFKKHVPTPSALEDLVVKQSVESISAGRLRQSVKISARARTTLSEFFSMQGAEIEITATHDFDRKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |