NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F064215

Metagenome / Metatranscriptome Family F064215

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F064215
Family Type Metagenome / Metatranscriptome
Number of Sequences 129
Average Sequence Length 66 residues
Representative Sequence MDDKLAADEARRSVQHESVKAQVEGEVQAEIADQAQAPAAGESQRIQQVAGDFRSKAVNEVVA
Number of Associated Samples 108
Number of Associated Scaffolds 129

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 81.40 %
% of genes near scaffold ends (potentially truncated) 98.45 %
% of genes from short scaffolds (< 2000 bps) 96.90 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (86.047 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(16.279 % of family members)
Environment Ontology (ENVO) Unclassified
(47.287 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(64.341 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 61.54%    β-sheet: 0.00%    Coil/Unstructured: 38.46%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 129 Family Scaffolds
PF14437MafB19-deam 4.65
PF02325YGGT 3.10
PF00221Lyase_aromatic 1.55
PF01152Bac_globin 0.78
PF03795YCII 0.78
PF13376OmdA 0.78
PF00990GGDEF 0.78
PF05685Uma2 0.78
PF00383dCMP_cyt_deam_1 0.78

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 129 Family Scaffolds
COG0762Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT familyPosttranslational modification, protein turnover, chaperones [O] 3.10
COG2986Histidine ammonia-lyaseAmino acid transport and metabolism [E] 1.55
COG2346Truncated hemoglobin YjbIInorganic ion transport and metabolism [P] 0.78
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.78
COG4636Endonuclease, Uma2 family (restriction endonuclease fold)General function prediction only [R] 0.78

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms86.05 %
UnclassifiedrootN/A13.95 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000559|F14TC_103894588All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300001431|F14TB_105671812All Organisms → cellular organisms → Bacteria → Acidobacteria674Open in IMG/M
3300002120|C687J26616_10160421All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809703Open in IMG/M
3300004157|Ga0062590_102291114All Organisms → cellular organisms → Bacteria → Acidobacteria568Open in IMG/M
3300004157|Ga0062590_102672303All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300004268|Ga0066398_10170661Not Available558Open in IMG/M
3300004643|Ga0062591_102831551All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300004782|Ga0062382_10590997All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300005093|Ga0062594_100783857All Organisms → cellular organisms → Bacteria → Acidobacteria878Open in IMG/M
3300005093|Ga0062594_103331002All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300005289|Ga0065704_10548387Not Available636Open in IMG/M
3300005333|Ga0070677_10266914All Organisms → cellular organisms → Bacteria856Open in IMG/M
3300005340|Ga0070689_101092959All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300005340|Ga0070689_101608815All Organisms → cellular organisms → Bacteria → Acidobacteria590Open in IMG/M
3300005345|Ga0070692_10857826All Organisms → cellular organisms → Bacteria → Acidobacteria624Open in IMG/M
3300005354|Ga0070675_100643526All Organisms → cellular organisms → Bacteria → Acidobacteria963Open in IMG/M
3300005355|Ga0070671_100152946All Organisms → cellular organisms → Bacteria1948Open in IMG/M
3300005355|Ga0070671_100419553All Organisms → cellular organisms → Bacteria → Acidobacteria1146Open in IMG/M
3300005364|Ga0070673_102200757All Organisms → cellular organisms → Bacteria → Acidobacteria524Open in IMG/M
3300005365|Ga0070688_100791109All Organisms → cellular organisms → Bacteria → Acidobacteria741Open in IMG/M
3300005406|Ga0070703_10229503All Organisms → cellular organisms → Bacteria → Acidobacteria743Open in IMG/M
3300005440|Ga0070705_100299568All Organisms → cellular organisms → Bacteria → Acidobacteria1151Open in IMG/M
3300005440|Ga0070705_101495442All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium565Open in IMG/M
3300005444|Ga0070694_100753209Not Available795Open in IMG/M
3300005468|Ga0070707_101310580All Organisms → cellular organisms → Bacteria → Acidobacteria690Open in IMG/M
3300005471|Ga0070698_101500553All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300005530|Ga0070679_101914099All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300005536|Ga0070697_100947202All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium764Open in IMG/M
3300005545|Ga0070695_101732018All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300005549|Ga0070704_101100872All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300005549|Ga0070704_101457502All Organisms → cellular organisms → Bacteria → Acidobacteria629Open in IMG/M
3300005549|Ga0070704_101970961All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300005549|Ga0070704_102054210All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria531Open in IMG/M
3300005578|Ga0068854_100969402All Organisms → cellular organisms → Bacteria → Acidobacteria751Open in IMG/M
3300005615|Ga0070702_100104394All Organisms → cellular organisms → Bacteria → Acidobacteria1744Open in IMG/M
3300005616|Ga0068852_101281943All Organisms → cellular organisms → Bacteria → Acidobacteria754Open in IMG/M
3300005618|Ga0068864_100205889All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1809Open in IMG/M
3300005842|Ga0068858_101252453Not Available729Open in IMG/M
3300006049|Ga0075417_10521973All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria598Open in IMG/M
3300006881|Ga0068865_101710099All Organisms → cellular organisms → Bacteria → Acidobacteria567Open in IMG/M
3300006881|Ga0068865_102018878Not Available523Open in IMG/M
3300007004|Ga0079218_10567004All Organisms → cellular organisms → Bacteria → Acidobacteria1026Open in IMG/M
3300009090|Ga0099827_11891856All Organisms → cellular organisms → Bacteria → Acidobacteria520Open in IMG/M
3300009093|Ga0105240_11218781All Organisms → cellular organisms → Bacteria → Acidobacteria796Open in IMG/M
3300009101|Ga0105247_11815269Not Available508Open in IMG/M
3300009148|Ga0105243_11501488All Organisms → cellular organisms → Bacteria → Acidobacteria697Open in IMG/M
3300009176|Ga0105242_10453827All Organisms → cellular organisms → Bacteria → Acidobacteria1209Open in IMG/M
3300009177|Ga0105248_11435006All Organisms → cellular organisms → Bacteria → Acidobacteria781Open in IMG/M
3300009553|Ga0105249_10426080All Organisms → cellular organisms → Bacteria1361Open in IMG/M
3300010044|Ga0126310_10163799All Organisms → cellular organisms → Bacteria1429Open in IMG/M
3300010154|Ga0127503_10196665Not Available508Open in IMG/M
3300010154|Ga0127503_11198201All Organisms → cellular organisms → Bacteria1171Open in IMG/M
3300010320|Ga0134109_10276387All Organisms → cellular organisms → Bacteria → Acidobacteria640Open in IMG/M
3300010397|Ga0134124_12662489Not Available543Open in IMG/M
3300010400|Ga0134122_11056282All Organisms → cellular organisms → Bacteria → Acidobacteria801Open in IMG/M
3300010403|Ga0134123_12143790All Organisms → cellular organisms → Bacteria → Acidobacteria620Open in IMG/M
3300011269|Ga0137392_10141320All Organisms → cellular organisms → Bacteria1937Open in IMG/M
3300011269|Ga0137392_10556420All Organisms → cellular organisms → Bacteria → Acidobacteria952Open in IMG/M
3300011270|Ga0137391_11228823All Organisms → cellular organisms → Bacteria → Acidobacteria597Open in IMG/M
3300011441|Ga0137452_1182750Not Available710Open in IMG/M
3300011444|Ga0137463_1025714All Organisms → cellular organisms → Bacteria2131Open in IMG/M
3300012045|Ga0136623_10086041All Organisms → cellular organisms → Bacteria1372Open in IMG/M
3300012200|Ga0137382_10670489All Organisms → cellular organisms → Bacteria → Acidobacteria743Open in IMG/M
3300012202|Ga0137363_10683835All Organisms → cellular organisms → Bacteria → Acidobacteria868Open in IMG/M
3300012206|Ga0137380_10749266All Organisms → cellular organisms → Bacteria845Open in IMG/M
3300012206|Ga0137380_10976453All Organisms → cellular organisms → Bacteria → Acidobacteria725Open in IMG/M
3300012208|Ga0137376_10581026All Organisms → cellular organisms → Bacteria → Acidobacteria970Open in IMG/M
3300012285|Ga0137370_11045887All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M
3300012349|Ga0137387_10873684All Organisms → cellular organisms → Bacteria → Acidobacteria651Open in IMG/M
3300012350|Ga0137372_10972620All Organisms → cellular organisms → Bacteria → Acidobacteria595Open in IMG/M
3300012360|Ga0137375_11279664All Organisms → cellular organisms → Bacteria → Acidobacteria555Open in IMG/M
3300012361|Ga0137360_11511094All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium576Open in IMG/M
3300012363|Ga0137390_11962702All Organisms → cellular organisms → Bacteria → Acidobacteria512Open in IMG/M
3300012685|Ga0137397_10999252All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300012918|Ga0137396_10533288All Organisms → cellular organisms → Bacteria → Acidobacteria869Open in IMG/M
3300012925|Ga0137419_11914974All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300012944|Ga0137410_11635209All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300012989|Ga0164305_11210284All Organisms → cellular organisms → Bacteria → Acidobacteria655Open in IMG/M
3300013100|Ga0157373_10900497All Organisms → cellular organisms → Bacteria → Acidobacteria656Open in IMG/M
3300013100|Ga0157373_11395639All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300013297|Ga0157378_10830638All Organisms → cellular organisms → Bacteria → Acidobacteria951Open in IMG/M
3300013297|Ga0157378_12782799All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300013306|Ga0163162_10803163All Organisms → cellular organisms → Bacteria → Acidobacteria1058Open in IMG/M
3300014056|Ga0120125_1102215All Organisms → cellular organisms → Bacteria → Acidobacteria670Open in IMG/M
3300014326|Ga0157380_13194643All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300015245|Ga0137409_11156642All Organisms → cellular organisms → Bacteria → Acidobacteria614Open in IMG/M
3300018027|Ga0184605_10184343All Organisms → cellular organisms → Bacteria → Acidobacteria945Open in IMG/M
3300018027|Ga0184605_10189076All Organisms → cellular organisms → Bacteria933Open in IMG/M
3300018052|Ga0184638_1171572All Organisms → cellular organisms → Bacteria → Acidobacteria774Open in IMG/M
3300018054|Ga0184621_10121900All Organisms → cellular organisms → Bacteria → Acidobacteria932Open in IMG/M
3300018061|Ga0184619_10009623All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes3762Open in IMG/M
3300018061|Ga0184619_10152782All Organisms → cellular organisms → Bacteria → Acidobacteria1053Open in IMG/M
3300018061|Ga0184619_10295617All Organisms → cellular organisms → Bacteria → Acidobacteria743Open in IMG/M
3300018422|Ga0190265_11308772All Organisms → cellular organisms → Bacteria → Acidobacteria841Open in IMG/M
3300018429|Ga0190272_11712679All Organisms → cellular organisms → Bacteria → Acidobacteria651Open in IMG/M
3300018429|Ga0190272_11858303All Organisms → cellular organisms → Bacteria → Acidobacteria631Open in IMG/M
3300018429|Ga0190272_11863693All Organisms → cellular organisms → Bacteria → Acidobacteria630Open in IMG/M
3300018429|Ga0190272_12945848All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300018465|Ga0190269_11021768All Organisms → cellular organisms → Bacteria → Acidobacteria627Open in IMG/M
3300018466|Ga0190268_10965753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium tumefaciens complex → Agrobacterium fabacearum673Open in IMG/M
3300018466|Ga0190268_11281105All Organisms → cellular organisms → Bacteria → Acidobacteria616Open in IMG/M
3300018469|Ga0190270_10854185All Organisms → cellular organisms → Bacteria → Acidobacteria923Open in IMG/M
3300018920|Ga0190273_10594349All Organisms → cellular organisms → Bacteria → Acidobacteria834Open in IMG/M
3300019248|Ga0180117_1227482Not Available600Open in IMG/M
3300019377|Ga0190264_11024347All Organisms → cellular organisms → Bacteria → Acidobacteria663Open in IMG/M
3300020060|Ga0193717_1081561All Organisms → cellular organisms → Bacteria → Acidobacteria1058Open in IMG/M
3300023057|Ga0247797_1052508Not Available588Open in IMG/M
3300025735|Ga0207713_1083928All Organisms → cellular organisms → Bacteria1138Open in IMG/M
3300025927|Ga0207687_11381023All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300025934|Ga0207686_10698380Not Available806Open in IMG/M
3300025936|Ga0207670_10930160All Organisms → cellular organisms → Bacteria → Acidobacteria729Open in IMG/M
3300025940|Ga0207691_11265309All Organisms → cellular organisms → Bacteria → Acidobacteria610Open in IMG/M
3300025941|Ga0207711_12012479All Organisms → cellular organisms → Bacteria → Acidobacteria520Open in IMG/M
3300026118|Ga0207675_101337273All Organisms → cellular organisms → Bacteria → Acidobacteria737Open in IMG/M
3300026551|Ga0209648_10833371All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300026714|Ga0207567_100525All Organisms → cellular organisms → Bacteria → Acidobacteria671Open in IMG/M
3300027639|Ga0209387_1143315Not Available621Open in IMG/M
3300027681|Ga0208991_1113476Not Available810Open in IMG/M
3300027843|Ga0209798_10184036All Organisms → cellular organisms → Bacteria → Acidobacteria1036Open in IMG/M
3300027846|Ga0209180_10586015Not Available617Open in IMG/M
3300027873|Ga0209814_10579464Not Available500Open in IMG/M
3300031164|Ga0307502_10057623All Organisms → cellular organisms → Bacteria → Acidobacteria728Open in IMG/M
3300031456|Ga0307513_10280252All Organisms → cellular organisms → Bacteria1445Open in IMG/M
3300031740|Ga0307468_101061145All Organisms → cellular organisms → Bacteria → Acidobacteria718Open in IMG/M
3300031908|Ga0310900_10320419All Organisms → cellular organisms → Bacteria → Acidobacteria1148Open in IMG/M
3300031944|Ga0310884_10676503Not Available622Open in IMG/M
3300032002|Ga0307416_100072484All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes2867Open in IMG/M
3300032180|Ga0307471_103816448Not Available533Open in IMG/M
3300033814|Ga0364930_0023299All Organisms → cellular organisms → Bacteria2076Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil16.28%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.85%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere10.85%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment5.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.65%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere3.10%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.10%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.88%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.33%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.33%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.33%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.33%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment1.55%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil1.55%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.55%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.55%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.55%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.55%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.55%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.55%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.55%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.55%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.55%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.78%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.78%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.78%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.78%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.78%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.78%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.78%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.78%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.78%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.78%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.78%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza0.78%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.78%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.78%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300002120Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300004782Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2FreshEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011441Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2EnvironmentalOpen in IMG/M
3300011444Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2EnvironmentalOpen in IMG/M
3300012045Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014056Permafrost microbial communities from Nunavut, Canada - A20_5cm_0MEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018920Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 ISEnvironmentalOpen in IMG/M
3300019248Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300020060Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2EnvironmentalOpen in IMG/M
3300023057Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6EnvironmentalOpen in IMG/M
3300025735Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026714Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027639Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027843Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300031164Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 16_SEnvironmentalOpen in IMG/M
3300031456Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EMHost-AssociatedOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033814Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F14TC_10389458813300000559SoilMDDKLAADEARRSVQHGSVKAQVEGEVQSEIADQAQAPAAGESDRI
F14TB_10567181213300001431SoilMDDKLATDEARRSVQHESVKAQVEGEVQSEIADRASQGPPPGEAAKIDR
C687J26616_1016042123300002120SoilMDDNKLALEESRRAAQHEAVKAHVEGEVNAEIADRASQTTLPGESARIGQVADQFRAKAVDEVVET
Ga0062590_10229111413300004157SoilMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVAGESAKIRDVAGDFRAKAVNEVVDTEREVERGR
Ga0062590_10267230323300004157SoilMDDKLAADEARRSVQHESVKSQVEGDVNAEIASRASQGAPAEAQKIDRVAGDFRAKAV
Ga0066398_1017066113300004268Tropical Forest SoilMEDDKLALEESRRTARHESVKDEVEGNVQAEISERAAKNRAPGEAQRINDVAGQFRSKAVDEVVDTEREVQRSRGL
Ga0062591_10283155123300004643SoilMDDKLAADEARRSVQHEAVKSQVEGEVQSEIADRASAAPAPSEAGRIDEVAGSFRSKAVDEVVQTEREVERGRGAARVSQIIDYIF
Ga0062382_1059099723300004782Wetland SedimentMDDKLAADEARRAVQHEAVKAQVEGEVQAEIADQAQAPAPGESQKVQ
Ga0062594_10078385713300005093SoilMDDNKLAAEEARRSLQHESVKSQVEGEVNAEIADRASQGPAPTESRQIDEIAGEF
Ga0062594_10333100223300005093SoilMDDKLATDEARRSVQHESVKAQVEGEVQAEIADRASQGPPPGEAKKIDEVADRFRSRAVNEVVDT
Ga0065704_1054838733300005289Switchgrass RhizosphereMSDDKLAIEEARRAAQHESVKSQVEGEVQADIGQRAAVKGTPGEAQRIDQVAGEFRSKAVNEVIDSEREVQRSRGLAR
Ga0070677_1026691433300005333Miscanthus RhizosphereMGDDKLALEEARRATQHEAVKAQVENEVQAEITDRAAQKVAPHESQRIEQVAGDFRSKAVNEVVD
Ga0070689_10109295913300005340Switchgrass RhizosphereMDDKLAVEEARRAAQHESVKAQVEGEVNAEINERAATKATPTESRRIDEVAGDFRSKAVDEVVDTER
Ga0070689_10160881523300005340Switchgrass RhizosphereMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVAGESAKIRDVAGDFRAKAVNEVID
Ga0070692_1085782613300005345Corn, Switchgrass And Miscanthus RhizosphereMDDKLAADEARRSVQHETVKAQVEGEVQAEIADRASAGPAAGEAQKIDEVAGQFRSKAVNEVVDTEREVER
Ga0070675_10064352623300005354Miscanthus RhizosphereMDDKLAADEARRSVQHESVKANVEGEVQAEIADQAQAPVAGESARIRDVAGDFRAKAVNEVI
Ga0070671_10015294613300005355Switchgrass RhizosphereMEDDKLAVEEARRATQHEAVKAQVEDNVQAEITERAAQRTTPTQSQRIERVAGDFRSKAVDEVID
Ga0070671_10041955313300005355Switchgrass RhizosphereMDDKLAADEARRSVQHEAVKANVEGEVQAEIADHAQAPVAGESAKIRDVAGEFRAKAVNEVIDTEREVERG
Ga0070673_10220075723300005364Switchgrass RhizosphereMVDTQQCLSYYSNMDDKLAADEARRSVQHEAVKSQVEGEVQAEIADRASAAPAPSEAGKIDEVAGSFRSKAVNEVVETEREVQRGRG
Ga0070688_10079110923300005365Switchgrass RhizosphereMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVVGESAKIRDVAGDFRAKAVNEVID
Ga0070703_1022950323300005406Corn, Switchgrass And Miscanthus RhizosphereMDDKLAADEARRSVQHDSVKAQVEGEVQSEIADKAQAPAAGESERIQQVAGEFRSKAVNEVVDTE
Ga0070705_10029956843300005440Corn, Switchgrass And Miscanthus RhizosphereMDDKLATDEARRSVQHESVKAQVEGEVQAEIADRASQGPPPGEAKKIDEVADRFR
Ga0070705_10149544223300005440Corn, Switchgrass And Miscanthus RhizosphereMEDNKLANEEARRAGQHSSVKSQVEGEVQAEIAESAAQTPPPESERIDQLAGQFRAKAVDEVVQTEREVERGRGAAR
Ga0070694_10075320933300005444Corn, Switchgrass And Miscanthus RhizosphereMDDEKLALEEARRGSQHEAVKGQVEGQVQSEISEQAAVGQHPAEAQRIEQVASDFRSKAVDEVIDTEREVQRSRGLARVSQ
Ga0070707_10131058023300005468Corn, Switchgrass And Miscanthus RhizosphereMDDKLATDEARRSVQHESVKAQVEGEVQAEIADRASQGPPPAEAAKIDQVAGQFRSKAVNEVVDT
Ga0070698_10150055333300005471Corn, Switchgrass And Miscanthus RhizosphereMDDNKLASEEARRSVQHESVKSQVEGDVNAEIADRASQGPPPGEGRKIEQVASQFRAKAVDEVVD
Ga0070679_10191409913300005530Corn RhizosphereMDDKLAADEARRSVQHEAVKSQVEGEVQAEIADRASAPPAASEAGRIDEVAGSFRSKAVNEVVETEREVERGRGA
Ga0070697_10094720233300005536Corn, Switchgrass And Miscanthus RhizosphereMDDEKLALEEARRGSQHEAVKGQVEGQVQSEISERAAVQGQAAEGQRIEQVASDFRSKAVDEVVDTEREVQRSRGL
Ga0070695_10173201823300005545Corn, Switchgrass And Miscanthus RhizosphereMDDKLAADEARRSIQHESVKAQVEGEVQSEIADQAQAPAAGESQRI
Ga0070704_10110087223300005549Corn, Switchgrass And Miscanthus RhizosphereMDDKLATDEARRSVQHESVKAQVEGEVQAEIADRASQGPPPGEAAKIDQVAGQFRSKAVNEVVDTERE
Ga0070704_10145750223300005549Corn, Switchgrass And Miscanthus RhizosphereMDDKLAADEARRSVQHESVKAQVEGEVQAEIADQAQAPAAGESQRIQQVA
Ga0070704_10197096113300005549Corn, Switchgrass And Miscanthus RhizosphereMDDNKLAAEEARRSVQHESVKSQVEGEVNAEIADRASQGPAPTESRKIDE
Ga0070704_10205421023300005549Corn, Switchgrass And Miscanthus RhizosphereLKDDKLAADEARRANQHELVKSQVEGEVHAEIAERSAPTRAEAAQVDQVADEFRAKAVNEVVGTEREVERARGA
Ga0068854_10096940223300005578Corn RhizosphereMDDKLATDEARRSVQHESVKAQVEGEVQAEIADRASQGPPPGEAAKIDQVAGQFRSKAVSEVVN
Ga0070702_10010439453300005615Corn, Switchgrass And Miscanthus RhizosphereMDDNKLAAEEARRSVQHESVKSQVEGDVNAEIASRASQGAPAEAQKIDQVAGDFRAKAVDEVVDTEREVER
Ga0068852_10128194313300005616Corn RhizosphereMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVAGESARIRNVAGEFRAKAVNEVIDTEREVERGRGAA
Ga0068864_10020588943300005618Switchgrass RhizosphereMLARAEFFMDDKLATDEARRSVQHETVKAQVEGEVQAEIADRASQAPARGEAAKIDQVAGQFRSKAVN
Ga0068858_10125245323300005842Switchgrass RhizosphereMGDDKLAIEEARRAAQHESVKSQVEGEVNAEISDRAATKATHDESRRIDQVAGDFRAKAVDEVVDSEREVQRSRGLARVS
Ga0075417_1052197313300006049Populus RhizosphereMEDNKLAADEARRAGQHGSVKSQVEGEVQAEIAERAADKPAPESERIDQVAGQFRTKAVDEVVQTEREVERGRGA
Ga0068865_10171009913300006881Miscanthus RhizosphereMADDKLASEEARRSVQHDSVKAQVEGDVNAEIAAKASQGPPAGEERRIEDVAGQFRSKAVDEVVSTEREVERGRGA
Ga0068865_10201887823300006881Miscanthus RhizosphereMSDDKLAIEEARRAAQHESVKSQVEGDVNAEIGERAAVKTAPGESQRIDQVAGEFRSKAVNEVVETERE
Ga0079218_1056700413300007004Agricultural SoilMDDKLASEEARRSVQHDSVKSQVEGEVQAEIADQAQIPARGEEPRIKEVAGQFRSKAVDEVVSTEREVQRGRGAARVWQVID
Ga0099827_1189185623300009090Vadose Zone SoilMDDKLANDEARRSVQHGSVKAQVEGEVQAEIADKAQAPAAGESQRIQQVAGDFRSK
Ga0105240_1121878113300009093Corn RhizosphereMDDKLATDEARRSVQHESVKAQVEGEVQAEIADRASQGPPPGEAKKIDEVADRFRSRAVNEVVDTEREVE
Ga0105247_1181526913300009101Switchgrass RhizosphereMSDDKLAIEEARRAAQHESVKSQVEGEVQAEIGERAAVKTVPGESQRIDQVAGEFRSKAVNEVVESEREVQRSRG
Ga0105243_1150148833300009148Miscanthus RhizosphereMDDKLAADEARRSVQHESVKAQVEGEVQAEIADQAQAPAAGESQRIQQVAGDFRSKAVNEVVA
Ga0105242_1045382723300009176Miscanthus RhizosphereMSRNARPRGVFMDDKLATDEARRSVQHESVKAQVEGEVQAEIADRASQGPPPGEAAKIDQVAGQFRSKAVNEVVDTEREVERGRGAARIS*
Ga0105248_1143500613300009177Switchgrass RhizosphereMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVAGESAKIRDVAGDFRAKAVNEVI
Ga0105249_1042608033300009553Switchgrass RhizosphereDGLVDRQHWPDYYSNMDDKLAADQARRSVQHEAVKSQVEGEVQSEIADRASAAPAPSEAGRIDEVAGSFRSKAVDEVVQTEREVERGRGAARFS*
Ga0126310_1016379913300010044Serpentine SoilMSDDKLAIEEARRAAQHESVKSQVEGEVQGEISERAAVKTTPGEAQRIDGVAGEFRSKAVNEVIDTEREVQRSR
Ga0127503_1019666523300010154SoilMDDDKLAVEETRRATQHEAVKSQVEDNVQAEISERAAQRTTPTESQRIERVAGDFRSKAVDEVIDTEREVQRSR
Ga0127503_1119820123300010154SoilMGDDKLALEEARRATQHEAVKAQVENEVQSEITDRAAQKVAPHESQRIEQVAGDFRSKAVNEVVDTER*
Ga0134109_1027638723300010320Grasslands SoilMEPEANNSGAIMEDDKLANEEARRSVQHQSVKGQVEGEVNAEIADRASDVPPPGEARKIDEVAGQFRAKAVNEVVETEREVQQSR
Ga0134124_1266248913300010397Terrestrial SoilMLARAEFFMDDKLATDEARRSVQHETVKAQVEGEVQAEIADRASQAPARGEAAKIDQVAGQFRSKAVNE
Ga0134122_1105628213300010400Terrestrial SoilMDDKLAAEEARRSVQHEAVKAEVEGEVQSEIASHASRPVTADEPARIQQVAGEL
Ga0134123_1214379013300010403Terrestrial SoilMDDKLAADEARRSVQHDAVKSQVEGEVQSEIADQAQTPVAGESQKIHE
Ga0137392_1014132013300011269Vadose Zone SoilMDDKLAADEARRSVQHEAVKSQVEGEVQSEIADRASQGPPPGEARKIDEVAGQFRAKAVNEVVDTERE
Ga0137392_1055642033300011269Vadose Zone SoilMDDDKLAMEEARRAEQHGAVKSQVEGEVQAEIADRAAQAPPAEGQKIDQVAGEFRAKAVKEVVETEREVGRAR
Ga0137391_1122882313300011270Vadose Zone SoilMDDKLAADEARRSVQHESVKAQVEGEVQSEIADQAQAPAPGESQRIQQ
Ga0137452_118275013300011441SoilMDDNKLANDEARRSSQHGSVKAQVEGEVNAEIAQQAAVSAPKEERKIEE
Ga0137463_102571473300011444SoilMDDKLAADEARRSVQHETVKSQVEGEVQAEIADQAQAPVAGESQKIQQVAGQFRSKAVDEVIDTEHEVE
Ga0136623_1008604113300012045Polar Desert SandMDDNKLAADEARRSIQHESVKTQVEGDVNAEIAQQASQAPPPGEVRKIEQVAGQFRAKAVDE
Ga0137382_1067048913300012200Vadose Zone SoilMDDKLAADEARRSVQHEAVKSQVEGEVQAEIADRTSQAPPPGEAGKIDEVAGHFRAKAVNEVVDTEREVERGR
Ga0137363_1068383523300012202Vadose Zone SoilMKLDRQECLSYYANMDDKLAADEARRSVQHEAVKSQVEGEVQAEIADRASQSPPASEAGKIDEVAGHFRAKAVNEVVD
Ga0137380_1074926613300012206Vadose Zone SoilMDDNKLAAEESRRSSQHQSVKAQVEGDVNAEIAERASQAPPGEARKIEQVAGQFRAKAVDEVVDTEREVG
Ga0137380_1097645323300012206Vadose Zone SoilMLVGLESFMDDKLAADEARRSVQHESVKAQVEGEVQSEIADQAQASAPGESQRAKQVAGDFRAKAVNDVVATEREVERGRGAP
Ga0137376_1058102623300012208Vadose Zone SoilMQPMDDKLAADEARRSVQHEAVKSQVEGEVQAEIADRASQAPPPAEAGKIDEVAGHFRAKAVNEV
Ga0137370_1104588723300012285Vadose Zone SoilMQPMDDKLAADEARRSVQHEAVKSQVEGEVQAEITDRASQAPPAGEAGKIDE
Ga0137387_1087368423300012349Vadose Zone SoilMLVELEFLMDDKLAADEARRSVQHETVKSQVEGEVQSEIADHAQAPAAGESQRVKQVAGDFRAKAVNEVVDT
Ga0137372_1097262013300012350Vadose Zone SoilMDDKLAADEARRSVQHESVKAQVEGEVQADIADQAHAPAAGESQRVQQVAGEF
Ga0137375_1127966413300012360Vadose Zone SoilMLVGLESLMDDKLAADEARRSVQHESVKAQVEGEVQAEIADHAQAPAAGESKKV
Ga0137360_1151109413300012361Vadose Zone SoilMDDDKLAMDEARRTEQHGAVKSQVEGEVQAEIADRASQRPPPDEARNIDEVAGQFRSKAVNEVVTT
Ga0137390_1196270213300012363Vadose Zone SoilMDDKLAADEARRSVQHESVKAQVEGEVQSEIADQAQAPAPGESQRIQQVAGEFRSKA
Ga0137397_1099925223300012685Vadose Zone SoilMDDNKLAAEEARRSVQHESVKSQVEGDVNAEIADRASQGPPPGEGRKIEQVAGQ
Ga0137396_1053328813300012918Vadose Zone SoilMDDKLAADEARRSVQHETVKAQVEGEVQAEIADQAQAPAAGESPRIQQVAGEFRSKAVNEVVATEREV
Ga0137419_1191497413300012925Vadose Zone SoilMDDNKLAAEEARRSVQHESVKAQVEGDVNAEIADRASQGPPPGEGRKIEQVVGQFRAKAVDAVVDTEREVGRSRTLARIPQIVDYIFF
Ga0137410_1163520913300012944Vadose Zone SoilMNDDKLALEEARRAGQHDAVKSQVEGEVQAEIADRAAVTPAAEGQKIDQVAGDFRAKAVNEVVETEREVGRARGAA
Ga0164305_1121028413300012989SoilMDDKLAADEARRSVQHEAVKSQVEGEVQAEIADRASAAPPPSEAGRIDE
Ga0157373_1090049713300013100Corn RhizosphereMPVRAEFFMDDKLATDEARRSVQHESVKAQVEGEVQAEIADRASQCPPPGEAAKIDQVAGQFRSKAVNEVVNTEREVERGRGAARI
Ga0157373_1139563923300013100Corn RhizosphereMDDKLAADEARRSVQHDAVKSQVEGEVQSEIADQAQAPVAGESQKIHEVAGQFRAK
Ga0157378_1083063813300013297Miscanthus RhizosphereMDDKLANDEARRSVQHESVKAQVEGEVQAEIAEAQAPAPAESQRIQEVAGEFRAKAVDEVVDTEREVQR
Ga0157378_1278279913300013297Miscanthus RhizosphereMDDKLAADEARRSVQHETVKSQVEGEVHAEIADRASAAPAPSEAGRIDEVPGSFRSKAVNEVVQTEREVER
Ga0163162_1080316313300013306Switchgrass RhizosphereMDDKLAADEARRSVQHETVKSQVEGEVQAEIADRASAAPAPSEAGRIDE
Ga0120125_110221533300014056PermafrostMDDKLAADEARRSVQHESVKAQVEGEVQSEIADQAQAPAPGESQRIQQVAGEFR
Ga0157380_1319464313300014326Switchgrass RhizosphereVNTARLKQEHFMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVAGESAKIRDVAGDFRAKAVNEVIDTERE
Ga0137409_1115664213300015245Vadose Zone SoilMGSDALPTGVFMDDKLAADEARRSVQHNTVKAQVEGEVQTEIADAANQSPRPGEAQKIEEVAGHFRFKA
Ga0184605_1018434333300018027Groundwater SedimentMDDKLAADEARRSVQHESVKANVEGEVQAEIADQAQAPAAGESQKIREV
Ga0184605_1018907623300018027Groundwater SedimentMDDKLAADEARRSVQHESVKAQVEGEVQSEIADQAQAPAAGESQRVQQVAGQFRAKAVDEVIDTEREVERGRGAARVSQIIDYIF
Ga0184638_117157223300018052Groundwater SedimentMDNKLADDEARRSVQHGSVKAQVEGEVQAEIADQAQVPAAGETRK
Ga0184621_1012190023300018054Groundwater SedimentMDDKLAADEARRSVQHESVKAQVEGEVQSEIADQAQAPAAGESQKIKDVAGQFRSKAVNEVV
Ga0184619_1000962313300018061Groundwater SedimentMDDKLATDEARRSVQHDAVKSQVEGEVQAEIADQAQAPVAGESEKIHQVAGQFRAKAV
Ga0184619_1015278233300018061Groundwater SedimentMDDKLAAEEARRSVQHDSVKSQVEGEVQSEIASQAQAPAAGEAPRIKEVAGHFRS
Ga0184619_1029561713300018061Groundwater SedimentVRFLARRAQLRLDRQECLSYYSGMDEKLATDEARRSVQHEAVKSQVEGEVQAEIADQAQAPVAGESEKIHQVAGQFRAKAV
Ga0190265_1130877223300018422SoilMDDKLASEEARRSVQHESVKANVEGEVQSEIANQASQPAARDEPRIQQVAGEFRAKAVDEVI
Ga0190272_1171267913300018429SoilMDDKLAADEARRSVQHESVKAQVEGEVQSEIADQAAQPAPGEPQRIQQVAGDFRSKAVDEVIDTEREVERGRGAARVSQIIDYI
Ga0190272_1185830313300018429SoilMDDKLAADEARRSVQHESVKAQVEGEVQSEIAAEASQPVTADEPERVRQVASDFRSKAVDEVVSTEREVERG
Ga0190272_1186369323300018429SoilMDDKLATEEARRSVQHESVKAQVEGEVQSEIADQASVPAAGEPQRIQQVAGEFRSRAVDEVIDTEREVERGRGA
Ga0190272_1294584823300018429SoilMQDDKLGAEEARRSVQHESVKSQVEGDVNAEIAEKASQGPPPGEERRIEDVAGRFRSKAVDEVVSTE
Ga0190269_1102176813300018465SoilMEDDKLASEEARRSVQHDSVKAQVEGDVNAEIAAKASQGLPPGEERRIEDVAGQFRAKAVNEVVDTE
Ga0190268_1096575333300018466SoilVGDDNKLAAEEARRAAQPGAVKSEIESDVNAEITDRAATKTTRNESQKIDQAAGEFRSKAVDEVVDTEREVQRSRGLARVSQ
Ga0190268_1128110513300018466SoilMDDKLAADEARRSVQHESVKANVEGEVQSEIAAEASRPVTADEPQRVRQVASEFRSKAVDEVVD
Ga0190270_1085418523300018469SoilMEDDKLASEEARRSVQHESVKAQVEGDVNAEIAAKASQGPPPGEERRIEDVAGQFRAKAVNEVVDTEREVERGRGAA
Ga0190273_1059434913300018920SoilMDRQECLSYYSNMDDKLAADEARRSVQHEAVKSQVEGEVQSEIADRASQAPPPSEAGKIDDVAGRSREKAVNEVVDTEREVERGRGAAR
Ga0180117_122748233300019248Groundwater SedimentMDDNKLANDEARRSAQHGSVKAQVEGDVNADIAQQAAQAAPTEERKIEEVAGQFRAKAVDEVVSTEREVE
Ga0190264_1102434723300019377SoilMDDKLAADEARRSVQHEYVKAQVDGEVQSAIGAEASRPVTADAPQRVKQVAGEFRSTAVDEVV
Ga0193717_108156133300020060SoilMDDKLAADEARRSVQHETVKAQVEGEVQAEIADQAQAPAAGESQKIQQVAGEFRSKAVNEVVDTEREVER
Ga0247797_105250813300023057SoilMNDDKLALEEARRAAQHETVKAQVEGEVQAEISERAAQKTVPNEAQRIDNVAGQFKAKAVDEVIDTEQEVQRARGLAR
Ga0207713_108392813300025735Switchgrass RhizosphereMSDDKLAIEEARRAAQHESVKSQVEGEVQAEIGERAAVKSAPNESQRIDQVAGEFRSKAVDEVVDTEREVQ
Ga0207687_1138102323300025927Miscanthus RhizosphereMDDKLANDEARRSVQHESVKAQVEGEVQAEIAEAQAPAPAESQRIQEV
Ga0207686_1069838013300025934Miscanthus RhizosphereMGDDKLALEEARRATQHEAVKAQVENEVQAEITDRAAQKVAPHESQRIEQVAGDFRSKAVNEVVDTEREVQRSRGL
Ga0207670_1093016013300025936Switchgrass RhizosphereMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVAGESAKIRDVAGDFRAKAVNEVIDT
Ga0207691_1126530913300025940Miscanthus RhizosphereMDDKLATDEARRSVQHETVKAQVEGEVQSEIADRASQGPPPGEAAKIDQVAGQFRS
Ga0207711_1201247923300025941Switchgrass RhizosphereMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVAGESAKIRDVAGDF
Ga0207675_10133727313300026118Switchgrass RhizosphereMDDKLAADEARRSVQHEAVKANVEGEVQAEIADQAQAPVAGESAKICDVAGD
Ga0209648_1083337123300026551Grasslands SoilVDDDKLAMEEARRAEQHGAVKSQVEGEVQAEIADRAAQAAPAEGQKIDRVAGEFRAKAVNEVVQ
Ga0207567_10052513300026714SoilMDDKLATDEARRSVQHETVKAQVEGEVQSEIADRASQGPPPGEAAKIDQVAGQFRSKAVNEVVDTEREVERGRG
Ga0209387_114331533300027639Agricultural SoilMDDNKLAADEARRSVQHESVKAQVEGDVNAEIAQEASKAPPPGEARKIENVAGQFRSKA
Ga0208991_111347633300027681Forest SoilMSDDKLASEEARRSVQHQSVKAQVEGEVNAEIAERATRKPPTGETRRIENVAGEFRAK
Ga0209798_1018403633300027843Wetland SedimentMDDKLAADEARRAVQHEAVKAQVEGEVQAEIADQAQAPAPGESQKVQQVAGEFRAKAV
Ga0209180_1058601513300027846Vadose Zone SoilMSGGLMDDNKLASEEARRSVQHESVKSQVEGDVNAEIADRASQGPPPGEGRKIEQVASQFRAKAVDEVVDT
Ga0209814_1057946413300027873Populus RhizosphereMNDDKLAIEEARRAAQHDSVKSQVDGEVQAEIGERAATKSTPHESQQIDQVAGEFRSKAVNEVVDTEREVGRSR
Ga0307502_1005762313300031164SoilMDDKLAAEEARRAVQHESVKAQVEGEVQSEIADHAQAPAAGESQRIQQVAGEFRSKAVNEVIDTEREVERGRGAARVS
Ga0307513_1028025213300031456EctomycorrhizaMDDNKLANDEERRSVQHGSVKSQVEGEVNAEIADKATQSAPKEDRKIEEVATQFRAKA
Ga0307468_10106114513300031740Hardwood Forest SoilMDDKLAAEEARRSVQHESVKAQVEGEVQSEIADQAQAPAAGESQRIQQ
Ga0310900_1032041933300031908SoilMDDNKLAAEEARRSVQHESVKSQVEGDVNAEIASRASQGAPAEAQKIDRVAGEFRAKAVDEVVNTER
Ga0310884_1067650313300031944SoilMGDDKLAIEEARRAAQHESVKSQVEGEVNAEISDRAATKTTHDESRRIDQVAGDFRSKAVDEVVDSEREVQRSRGLARVS
Ga0307416_10007248413300032002RhizosphereMDDNKLAADEARRSIQHESVKAQVEGDVNAEIAQEASKAPPPGEARKIENVAGQFRSQAVDEVIDTEREVERG
Ga0307471_10381644813300032180Hardwood Forest SoilMDDKLAADEARRSAQHETVKSQVEGEVQQEIADQAQAPAPGESQKIHQVAGEFRSKAVNEVVDT
Ga0364930_0023299_3_2273300033814SedimentMDDKLAADEARRSVQHESVKAQVEGEVQAEIADHAQAPAAGESQRVQQVAGEFRSKAVNEVVDTEREVERGRGAA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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