NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026370

3300026370: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 F5



Overview

Basic Information
IMG/M Taxon OID3300026370 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133548 | Gp0296349 | Ga0256816
Sample NameSediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 F5
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size86082388
Sequencing Scaffolds18
Novel Protein Genes20
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.1
Not Available3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)31.3377Long. (o)-81.4644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007558Metagenome / Metatranscriptome349Y
F013597Metagenome / Metatranscriptome270Y
F016394Metagenome247Y
F031548Metagenome / Metatranscriptome182Y
F036032Metagenome / Metatranscriptome171Y
F050467Metagenome145Y
F050471Metagenome / Metatranscriptome145Y
F052686Metagenome / Metatranscriptome142Y
F055831Metagenome / Metatranscriptome138Y
F056185Metagenome138Y
F058543Metagenome135N
F060457Metagenome / Metatranscriptome133Y
F060458Metagenome / Metatranscriptome133Y
F063813Metagenome / Metatranscriptome129N
F071376Metagenome122Y
F077972Metagenome117Y
F080090Metagenome / Metatranscriptome115Y
F088925Metagenome / Metatranscriptome109Y
F097602Metagenome / Metatranscriptome104Y
F102135Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256816_1000905All Organisms → cellular organisms → Bacteria → Proteobacteria1270Open in IMG/M
Ga0256816_1001132All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium1199Open in IMG/M
Ga0256816_1001980All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1033Open in IMG/M
Ga0256816_1002802All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium941Open in IMG/M
Ga0256816_1003424All Organisms → cellular organisms → Bacteria888Open in IMG/M
Ga0256816_1006844All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria733Open in IMG/M
Ga0256816_1006879All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon732Open in IMG/M
Ga0256816_1012309All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.625Open in IMG/M
Ga0256816_1012321Not Available624Open in IMG/M
Ga0256816_1013123All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii614Open in IMG/M
Ga0256816_1013644All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria607Open in IMG/M
Ga0256816_1014901All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria592Open in IMG/M
Ga0256816_1015421Not Available586Open in IMG/M
Ga0256816_1021175All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium535Open in IMG/M
Ga0256816_1021671Not Available531Open in IMG/M
Ga0256816_1024116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium515Open in IMG/M
Ga0256816_1025373All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria508Open in IMG/M
Ga0256816_1026110All Organisms → cellular organisms → Bacteria504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256816_1000905Ga0256816_10009052F063813KPRYPITKTPINEFLTNEEILPIIHKDALMSLVRWSQAHGQKLKPSECESKFQPLAEPSHPSKKPSDQLGSGTGSAPIDETNSIERGLS
Ga0256816_1001132Ga0256816_10011322F050467MRSMLTLIAIVLTASLATAQISVGPGVTYIAPPRPMATIEFVQEAGIERWQVRLTGGQYTADTAYLRITGNSCTHMDEVYKGMITPLYEDMTFKTKNGRTCTVTAIER
Ga0256816_1001980Ga0256816_10019802F060457MPKDNADPRTSSSDIGIFLSTIFHIASIACVPFLVNGTVNGNIYTCGLLLVWIIYYSFRLAKSRKLLGLAFFGMALSAVVLGIYNFGLMSQYKNAKRYLGEERTFCREATYETLLSKYETEKSMISASFRLCLDKEHALPETCIKEVNHATSLNEVMLGNRLLRLSNCANSLTTRQKSVDRLKNNPWVKFWLNFP
Ga0256816_1002802Ga0256816_10028022F060458KIGIELICRYSFIQMGLTAVVQKITLLQEFIKKRCADAPAATIASRKKSGAQRVFEIIQSSEKGVDPLFIREMTGLKEQKTAKILYKLFKYGEIRIESGGLYVAVAGR
Ga0256816_1003424Ga0256816_10034242F036032LVLNALDLMPRGSRLLAIQLRGSGAVQPPLRAVHDSHHHLQIPQQFGASPG
Ga0256816_1004592Ga0256816_10045922F077972MASTPVILLQKRSGNSSDRPNSSTVQAGEAAMSFGSADPGLYFKDSAGSIRKFGSNHYGTTAPN
Ga0256816_1006844Ga0256816_10068441F052686MPESARIMENEAMTNKSRSKPPPPGSTDAEPGHLGVDDRGNVTWEWSDDEDLLADDSLGAAERVRALVDPKLQIREDEDDPLSPAQSNPKGLKSGYNPYNSGALGKQSWKKKKDL
Ga0256816_1006879Ga0256816_10068791F102135MFWIGFIVGIFLGANIGIVVAGLLISAKKNDAEDPKTQSPMDYAVMDEVKEVQGEMPALSKPVTYLDRYPHS
Ga0256816_1012309Ga0256816_10123091F097602VTILPSEGPSALGRCNCDTLSPKRNSNVDVMNRGSADEAVVIVKFGADEFMVTWRRVKHRISNRTLEVKGGTCKRPWPLIIDRRTEISLTGAVEYLRRKQ
Ga0256816_1012321Ga0256816_10123212F071376LNPVGLWTLHFDWGPSGNYNWTPLYFNFDGTFAYLAGANEGSWVQVDDNIICRFKPLPETENNTVYSGIATRNFMSGIMMSFQGQKGHWYAVKKGTKVYSLNNGTNLPYLVDKESKAKFDPVGKEK
Ga0256816_1013123Ga0256816_10131233F080090GWSEPLRVDNKLSNANSWRETYEEDEAALRSRLQDISTS
Ga0256816_1013644Ga0256816_10136442F031548MKINILKILSIVTLAIFLGAGISLAGGWKGDCAPRGNAYGHYKHGGYQHYHYAQPRPVYVERHYRPVVVERHYYPAPVYHAAPAPNGYFFGMSVMEPGVAFSFGISGH
Ga0256816_1014901Ga0256816_10149011F055831MQMIAELKMLLLEMLESAFQNADVHATQQMGVSMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQVEVTVAPQHPQLPPPGDEGDTDPIEACCTWLYENHTKWQDMQDLMKARYL
Ga0256816_1015421Ga0256816_10154211F016394MQNEELAYLAKKVRNSLPNVESFPIATIYTTIKEQEKTKLNLPDFKKLFYDLTGWDISLQVIRRQLEIYHIVWXEQLG
Ga0256816_1021175Ga0256816_10211751F050471HVHAIGWVLVANAYILTPAEARELTDLWTDLVRRRAADLRQAPLLLHLLFPRSLPLAPATRAALAKLVAHMVSQHPERFGDAALRQRRNHWAGQAMLGFLLSGLTAVLLPIHWTWAAPVTPTFLLMGFGCLLPTVMLWRAAAAVHACNTGRFATHLVERLLHRFQVR
Ga0256816_1021671Ga0256816_10216711F058543METVTISANINEKKKAEFFQTMESLTGLVQNQCNDLDIRVKDDNNLIIKITFDGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINDTAVNNN
Ga0256816_1022792Ga0256816_10227921F013597MSDLSVFLLTIRGTLKPATLEESRKVHNQTAGNPEGVAAAKSLGDVSHMVYVPAMHNGHDKPKGAGEFLIMDLWTSIEGLNTFFADHHVQEG
Ga0256816_1024116Ga0256816_10241161F088925MKEIPMQDRKCSKCGSINVYKNTSNNWHQDGLVIQMLAVDSFPALFQTEAFLCLDCRNLELQVLETSTMYGQQKSLVETIQASNNWR
Ga0256816_1025373Ga0256816_10253731F007558MQAIADLKALALKMLEGAFQSGDVHATQQMGVSMTNAVKREGVVIIQNQNVEVFARIIPSMVKMLKLCDAIESNWRRQAAIELEPQQDQLPPPAGGEDTDPIEACCLWLYENHINWQDMQDLMKARYLEYVIGRFKTKTEAAKWLGVGSTYLCKLSRTAMNN
Ga0256816_1026110Ga0256816_10261102F056185LASLLIAAGCAGPLAKIRAVDQPKEAELRANWKSYHTYCLRDYAILFQLKGDKTIEKENDWQEVTSDQMASRCASFFSLSPVKELRGENDAIFGYVIYNHNDGVSAVIIDPKTIRLFYHVHPKGP
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Biomedical Sciences Research Center "Alexander Fleming"
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