NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026282

3300026282: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_7/15/2010_ DNA (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026282 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0055735 | Gp0103137 | Ga0209053
Sample NameWastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_7/15/2010_ DNA (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size199334044
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Albitalea → Albitalea terrae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMadison, Wisconsin, USA
CoordinatesLat. (o)43.076217Long. (o)-89.411742Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048673Metagenome / Metatranscriptome148Y
F088925Metagenome / Metatranscriptome109Y
F097376Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209053_1006982All Organisms → cellular organisms → Bacteria3216Open in IMG/M
Ga0209053_1022122All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1358Open in IMG/M
Ga0209053_1051573All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Albitalea → Albitalea terrae705Open in IMG/M
Ga0209053_1061832Not Available614Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209053_1006982Ga0209053_10069821F088925MQDQKCSKCGSRNVYKNTGKNWCQDGIVLQMIAVDRFTYQFKTEAFLCLDCRYLEIRAAETNTVYGDHKTLIEAVEASNNWAKVSV
Ga0209053_1022122Ga0209053_10221222F048673MRTFAMLLILVAIAASQPHHWLTVLMAAIARCIGR
Ga0209053_1051573Ga0209053_10515732F097376MKKAVSPKKNKTATDVVPQKKQTKTGPVELDLTELKKVSGGLPRGGWEKIK
Ga0209053_1061832Ga0209053_10618321F097376MKKAVTPKNNKTADDVVTQKKQENKSGPVELNLEELKKVSGGLPKGGWRVK

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