Sample 3300025963

Overview

Basic Information
IMG/M Taxon OID	3300025963 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101397 \| Ga0210146
Sample Name	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	78848786
Sequencing Scaffolds	61
Novel Protein Genes	64
Associated Families	59

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	4
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina flavescens	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.107521	Long. (^o)	-121.649681	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004285	Metagenome / Metatranscriptome	445	Y
F014730	Metagenome / Metatranscriptome	260	Y
F016394	Metagenome	247	Y
F018997	Metagenome / Metatranscriptome	232	Y
F020727	Metagenome / Metatranscriptome	222	Y
F021795	Metagenome / Metatranscriptome	217	Y
F024821	Metagenome / Metatranscriptome	204	Y
F025775	Metagenome	200	Y
F025881	Metagenome / Metatranscriptome	200	Y
F027427	Metagenome / Metatranscriptome	194	Y
F028541	Metagenome / Metatranscriptome	191	Y
F032323	Metagenome	180	Y
F036300	Metagenome	170	Y
F036769	Metagenome / Metatranscriptome	169	Y
F039694	Metagenome / Metatranscriptome	163	Y
F041289	Metagenome / Metatranscriptome	160	Y
F041848	Metagenome / Metatranscriptome	159	N
F042655	Metagenome	158	Y
F043478	Metagenome / Metatranscriptome	156	N
F045836	Metagenome / Metatranscriptome	152	Y
F049074	Metagenome / Metatranscriptome	147	N
F049730	Metagenome / Metatranscriptome	146	Y
F049734	Metagenome	146	Y
F050029	Metagenome / Metatranscriptome	146	Y
F052016	Metagenome / Metatranscriptome	143	N
F053838	Metagenome / Metatranscriptome	140	Y
F054975	Metagenome / Metatranscriptome	139	N
F054980	Metagenome / Metatranscriptome	139	Y
F055476	Metagenome / Metatranscriptome	138	N
F055830	Metagenome / Metatranscriptome	138	Y
F056356	Metagenome	137	Y
F056712	Metagenome / Metatranscriptome	137	N
F059187	Metagenome / Metatranscriptome	134	Y
F060102	Metagenome / Metatranscriptome	133	Y
F061489	Metagenome	131	N
F063812	Metagenome	129	N
F065905	Metagenome	127	Y
F067458	Metagenome	125	Y
F068761	Metagenome / Metatranscriptome	124	N
F068997	Metagenome / Metatranscriptome	124	Y
F071376	Metagenome	122	Y
F071378	Metagenome / Metatranscriptome	122	Y
F071379	Metagenome	122	Y
F077462	Metagenome / Metatranscriptome	117	Y
F080208	Metagenome / Metatranscriptome	115	Y
F085863	Metagenome / Metatranscriptome	111	N
F087389	Metagenome / Metatranscriptome	110	Y
F089951	Metagenome	108	Y
F089952	Metagenome / Metatranscriptome	108	Y
F092299	Metagenome	107	Y
F093371	Metagenome	106	Y
F096508	Metagenome / Metatranscriptome	104	N
F097610	Metagenome	104	N
F098776	Metagenome / Metatranscriptome	103	Y
F101438	Metagenome / Metatranscriptome	102	N
F101439	Metagenome	102	Y
F101441	Metagenome	102	N
F103196	Metagenome / Metatranscriptome	101	N
F105432	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210146_1000003	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	16563	Open in IMG/M
Ga0210146_1000023	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	10294	Open in IMG/M
Ga0210146_1000172	All Organisms → cellular organisms → Bacteria	5714	Open in IMG/M
Ga0210146_1000218	All Organisms → cellular organisms → Bacteria → Proteobacteria	5214	Open in IMG/M
Ga0210146_1000223	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	5183	Open in IMG/M
Ga0210146_1000231	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	5147	Open in IMG/M
Ga0210146_1000306	Not Available	4599	Open in IMG/M
Ga0210146_1000420	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	4038	Open in IMG/M
Ga0210146_1000501	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	3711	Open in IMG/M
Ga0210146_1000553	All Organisms → cellular organisms → Bacteria	3548	Open in IMG/M
Ga0210146_1000591	All Organisms → cellular organisms → Bacteria	3430	Open in IMG/M
Ga0210146_1000670	All Organisms → cellular organisms → Bacteria → Proteobacteria	3260	Open in IMG/M
Ga0210146_1000712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	3164	Open in IMG/M
Ga0210146_1000899	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	2870	Open in IMG/M
Ga0210146_1000953	All Organisms → cellular organisms → Bacteria	2782	Open in IMG/M
Ga0210146_1000976	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2743	Open in IMG/M
Ga0210146_1001061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	2626	Open in IMG/M
Ga0210146_1001288	All Organisms → cellular organisms → Bacteria → Proteobacteria	2386	Open in IMG/M
Ga0210146_1001385	All Organisms → cellular organisms → Archaea → Euryarchaeota	2306	Open in IMG/M
Ga0210146_1001440	Not Available	2273	Open in IMG/M
Ga0210146_1001453	All Organisms → cellular organisms → Archaea	2268	Open in IMG/M
Ga0210146_1001509	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
Ga0210146_1001672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2105	Open in IMG/M
Ga0210146_1001776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	2039	Open in IMG/M
Ga0210146_1001859	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1994	Open in IMG/M
Ga0210146_1002071	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae	1882	Open in IMG/M
Ga0210146_1002165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	1833	Open in IMG/M
Ga0210146_1002304	All Organisms → cellular organisms → Archaea	1779	Open in IMG/M
Ga0210146_1002686	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	1645	Open in IMG/M
Ga0210146_1002936	All Organisms → cellular organisms → Bacteria	1580	Open in IMG/M
Ga0210146_1002949	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1578	Open in IMG/M
Ga0210146_1003042	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1555	Open in IMG/M
Ga0210146_1003101	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1539	Open in IMG/M
Ga0210146_1003392	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1473	Open in IMG/M
Ga0210146_1003985	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1363	Open in IMG/M
Ga0210146_1004880	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1239	Open in IMG/M
Ga0210146_1005329	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	1191	Open in IMG/M
Ga0210146_1005595	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1164	Open in IMG/M
Ga0210146_1005954	Not Available	1133	Open in IMG/M
Ga0210146_1005967	Not Available	1133	Open in IMG/M
Ga0210146_1006452	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231	1095	Open in IMG/M
Ga0210146_1007228	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium	1042	Open in IMG/M
Ga0210146_1011580	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	852	Open in IMG/M
Ga0210146_1012591	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	825	Open in IMG/M
Ga0210146_1013332	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	806	Open in IMG/M
Ga0210146_1013590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	800	Open in IMG/M
Ga0210146_1015273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	764	Open in IMG/M
Ga0210146_1016799	Not Available	737	Open in IMG/M
Ga0210146_1017132	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	732	Open in IMG/M
Ga0210146_1023361	Not Available	649	Open in IMG/M
Ga0210146_1023872	Not Available	643	Open in IMG/M
Ga0210146_1029927	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina flavescens	591	Open in IMG/M
Ga0210146_1031522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	579	Open in IMG/M
Ga0210146_1032692	Not Available	571	Open in IMG/M
Ga0210146_1035517	All Organisms → cellular organisms → Bacteria → FCB group	554	Open in IMG/M
Ga0210146_1036274	Not Available	549	Open in IMG/M
Ga0210146_1039404	Not Available	532	Open in IMG/M
Ga0210146_1040401	Not Available	527	Open in IMG/M
Ga0210146_1041309	Not Available	523	Open in IMG/M
Ga0210146_1041655	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	521	Open in IMG/M
Ga0210146_1045662	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210146_1000003	Ga0210146_100000320	F097610	MDADDIDDLITNYSEFEKKIDDKIQAYQKLKDSPDSIATAILIQSVESQKKSNDLAERMFHVSRVMVIFTGGALIIAAGALTFASLAYFTQGTDKTFWGIVTMSIVSLGVIAILLVFWPKKEKSIPKRKK
Ga0210146_1000023	Ga0210146_10000233	F036300	MDDMVAQGFGAIVIIYGGLIVITLGIVLFITKFWDALVSGDTGFILLWCAVILVLVSLYAGGGLLLRKYDII
Ga0210146_1000172	Ga0210146_10001721	F055830	KMEKKWKDTAGHKSGCPYKGVMVQGTAGEMAKYHSGYCPGCNIPVKWEEEKQEKEYAASK
Ga0210146_1000218	Ga0210146_10002182	F071379	MSPVRSILFRSCLTVASALAGCGTPAPPKADMPSLEQRLLELERRVERLEARPVIESPYRSKVEVQAHIKALEAERDALLVRYRDQHPDIRDINRRLGILNSQLQMMEQP
Ga0210146_1000223	Ga0210146_10002236	F089952	MNRMFTEDLNQEKIQWVIENIDELFLDIEEDEKDMY
Ga0210146_1000231	Ga0210146_10002312	F067458	MKRLVFAGLIFLVLLQGIWFAAADDSPDYAKIVVVHLTINKSSITEKSVEMRYGHPPNIEARNGDFKGTLKTADGSTIREFNLWDPRYQLGDVLEKDNESSGYLSGYLTYSDNADLVLILPYYENQMTFELYDKKTGTLLKKVNMSQAITKFQSNYPKDPGSISVSPIQFDKSVLYVITGVVISILIIGMILSMVRKK
Ga0210146_1000306	Ga0210146_10003065	F087389	MLMVIGAIVYIMSFVTDATPSSQTISSTIMPLIIIYGFFGIVLLIIGKKGHDYIMPR
Ga0210146_1000420	Ga0210146_10004205	F028541	MDERDRRKLIEKLKTSKKSEERDQILWYLAGQDKTTRGKPSKPEPVAAGAPSASPTQDRMQIRLPVGRLGGVGSITALLFVVYGMIAIIPAVMKILQGETDGEEIRQIITGGIFVFFGVVIFIKAKRAQRKAAEGS
Ga0210146_1000501	Ga0210146_10005012	F054980	MATTKGREGKEAPPKKAGAKPRKKEPVITMKDALQIAQAYLADKGGAFGISGVSDRVHEELMPFFASDSKRKGMLKDCWIVECSLDPFLVVDGGTMLIGISKKTGDILYAGILNVA
Ga0210146_1000553	Ga0210146_10005536	F024821	MHYQEQFGQEKASAIQEKFWKFKEQIVADNSADLDWFPDWKKRQILESLLDKTYLGLIAEMERESPS
Ga0210146_1000591	Ga0210146_10005912	F101439	MNGGTFFICPDCAFETQDPGKKICERCKSELLLKCPYCGKPMEKVRTIYCGHCGEKLKISICPIQ
Ga0210146_1000670	Ga0210146_10006702	F041289	MTEDLLDYWVRLLKPFFPANAWIVTRYAKDDHIIEIDWNLDNEPGRPNRRSRKIQITISNGAIEDYLDKDKKEREVFESSLTKLIQERYNLVDPDKQAPSGASSSADRLFIAKDTLNA
Ga0210146_1000712	Ga0210146_10007125	F105432	VKIRYLFISALISIGLLYVACGPTPEKSAKKTTTAAEKRSAEQKNTVRIKHLSGEVLAINAKTKTITVRFKDENVDLKFDNGTVVKIDLDSVKPSEIPLGARATVKYIERKGQHLAKGIFISTETAEKKEGTPQSSFRNSARQGYESIGAPVSSTT
Ga0210146_1000899	Ga0210146_10008995	F049734	MSESKNYGFQTQFTVVKKYHRHVLWLILGLLFALDIFTTSMSLHLGNFEKNPLMIPFAGNPALHGIVKLLAYIFLFFVIERAVIFIQERKPEKTPFWIKLNFQTLYGLIIFVLIYLIWLYLYVVASNILIIS
Ga0210146_1000953	Ga0210146_10009533	F093371	MTKFNRERRWTVACVLVIALSAFALAGCFAAVGNHMNWQPVDMARVLASDAGDQKWNTYRFQTVGPFATQRIAYVMFNDDITMDMWYTPYVNLGKMSVREVLQNHDAYLQQCMWIGTALVFEEYQRDGKLIGYKANEFQMEVDLWEMAAAGPKLNLRMIYIDRRSFSGGGGAGDPSTR
Ga0210146_1000976	Ga0210146_10009763	F056712	VGVLENIEKGLVRRLMKTSQKQPWMIVFFVVFLSMKKKEKKKPEAEKDENYWRVIGGL
Ga0210146_1001061	Ga0210146_10010611	F061489	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLLGGVGIFVMGLLR
Ga0210146_1001288	Ga0210146_10012883	F101438	MLRLMFSACLFVCSAASAWAGSPVDAPVSQATRFERLLDLRNNVSLVRYPQQALDLADAMSDPEFLVAAMMMSANPEIWLKAMERAGAPGVPQNLSQMATPEMLADWFYSSIDPQFQQAILTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPSTPMQWMTVTADGR
Ga0210146_1001385	Ga0210146_10013854	F054975	LTKQLFSIFDNKKKFFLISEDELKKFQHYVFDGLSVFDHPDARNLFHDVGSRQAQNDVRSWQLVCKYCPMNLRCEVLIEDTSKCAIFNKLTIRNYTLHAMEEIQFQRQRLHEILAGLKNGGTCDNHCELCILCDNVGHCVAEEAMRLLRESKIEDPSGTVCVA
Ga0210146_1001440	Ga0210146_10014402	F052016	MSERINVIFSSTNKNFLYNCEIPISMLPRNGERIRLSIPGHSDIRCYVEDMEWQYAELEKTIDISIVARVKILKED
Ga0210146_1001453	Ga0210146_10014533	F032323	MSYFVFRVKNDSELKSRVLYAILSQNPSYTVKEYKEEPDPADSNYHIISLTAYEKGPYRLIRKILAEFIKNNEITCLNGPSSDLLQ
Ga0210146_1001509	Ga0210146_10015091	F050029	MATIVIHWKDKNLPPMEIKDAAYKGADSSIIKITSGGKEYWFNWNECWFLETTSTQ
Ga0210146_1001672	Ga0210146_10016722	F060102	MPKKEKNKTEVQPQPVRDQKENFISMFTKIDSRQRHRILAYLFWLLGIFIILFAYRAS
Ga0210146_1001776	Ga0210146_10017762	F021795	MKKEADRIRRWRERQKAEGKSSLTVLLSQEAREFLAEEKEKTGENYAVIVEKALQTLKKQGYKPPVLKHFPKREEVLIRAAAQEHPPAAVPVTSYENGAQHRILIDDLANYPTLEDIEREQAGKEQSGIYDIKANEGLLTRLLRSSANPLGRKRKWFK
Ga0210146_1001859	Ga0210146_10018593	F049074	MDELIQSIIEKTGISREAALQIIDEVVAFAKSKVPGPFQHFVDQIFEREE
Ga0210146_1002071	Ga0210146_10020713	F101441	MEKKFIIVTGLLVLFVFTLLYWTRFQVIDVHAMNGVGFYKINRLTGETVLVSGLDQIRLMPVKDLEQPSLQLPVPGKAQQ
Ga0210146_1002118	Ga0210146_10021181	F103196	IKTNFTTPDDAMIETIELVEKAMGITLREGGFGNDVLRDMIIRAIGRLASISLSGGVYLNDGLFESAIVESCSKRNGTHAELANLAATGALDVQNQDHLKMVENWMTRA
Ga0210146_1002165	Ga0210146_10021652	F025775	MKQLLTFQGFPMVVVVAMIAWAWISLISVLIASFF
Ga0210146_1002304	Ga0210146_10023043	F016394	MQTDDLVRLAKRVRNSLPNLEVFPLSTIYTLIKEQEETDMNLPDFKELIYHLTGWDISLQVIRRQLEINQIVW
Ga0210146_1002686	Ga0210146_10026862	F089951	MMHEQGMNPSMQQGEMLMMEMWDTLTDDQKKTLMKRSLDAKIMMKEGMIKHFQFKIETFKLIKKMLDEC
Ga0210146_1002936	Ga0210146_10029361	F071378	MEIKSLTEQQKKALAEISIVVYGEELTRLMIPELKNYLNGSTKRDESAEQILKD
Ga0210146_1002949	Ga0210146_10029492	F014730	MKIFEAMVFKREIGSSCSLDVKILDTLKDGIVLTIEQNLVDNSNLALITDFVNKHKLSLLLDSECYFISTQALLPSKLSVWEN
Ga0210146_1003042	Ga0210146_10030422	F041848	MTYPSETITAKQYSTAVIAQGALFVSIVSVAHSFLHLRIGAVGANNLEVERLNLGEFVHFECPDGSVYEIRLLSVEGFD
Ga0210146_1003101	Ga0210146_10031011	F039694	MKVSSAGGGDRDIGTDKRPTMESSIVDTMRRYFENDTGKSKGDLEYTIINSVKRYFEGKPPER
Ga0210146_1003392	Ga0210146_10033922	F049730	MMLKETTLSSREMRGKHKPSMLILGSFEKLKHDLIPALFRIAGDREIGHIDIRSSPETFDLKQLTGYTLIFVAFEIYTDNESFFRMLPESIRDRITILSRPADFPSVAPEIKCSCFSSELKALLPREEADLLDHHPHSTEPR
Ga0210146_1003985	Ga0210146_10039853	F036769	MKKAIFLLSVLIVFLLVAPPDPADVQAAAPQDVMAGHWVLKFEDGRTGWANLVSDDYAKTSFSSKGKIEVPGFKKVDLTSGVIPEYYKTGQVILYNAQAQQKPFHFVRFIIEGNEVMTGYVATFDGKQYKFKAHKR
Ga0210146_1004880	Ga0210146_10048802	F077462	MDSDNRVKQRLSVSITAVLFLFACAGFACADVSKELKKISEEREKSVGYAKIAKVTFKKQQKKLTQAMLYYTDAKSIGNPMIQHLQTSLTSRSMKESQVREMLSDDVKRLVQVNEKFRAFIESGETSNRALPGLAAVAGMAGPITDACVNLWKEYKDADKKKVDNMVQVLDGYKWEDWDK
Ga0210146_1005329	Ga0210146_10053292	F053838	MRWNFWSLCGPLVAAHFGASAKTAGRTLFFLGVKRDFPTAPAGDMSKFVHLSH
Ga0210146_1005595	Ga0210146_10055951	F043478	MDPSDDHSAWRYQYSQPAKTAARARRMPVLSWLANFVFLSGTLLFAYQLYGWFGHDEWTRYPSIALVKYLPAGYFSFLNKVTVVKEFLLWLLERADLSVLMILMGFFITKFFVDSE
Ga0210146_1005954	Ga0210146_10059541	F065905	MSPKNKLISLVIFITAVLVIFFQTGYRHFYEAFPWSVKAYHTVKYPASLKFISPNSQSILMIVTGTVIILIILAYYPRDSQSL
Ga0210146_1005967	Ga0210146_10059672	F065905	MSPKYTLLSLVIAVTALLVVFFQTIYRQFYWSFPWSVNEYHTVKYPASLGFISPASQSFLMIVTGAVIILIILVFYPKETNTL
Ga0210146_1006452	Ga0210146_10064522	F055476	MKFRKYLDNFVGTVGELTADGVTYLFTVRPGEEPKKPAKLIQVDEDFVIVEMKFRRMKVNRVIPFGAFSLCISEE
Ga0210146_1007228	Ga0210146_10072281	F080208	MEVEEFLNVINECDVLREDIDDIRGRVALTKAEGGKLAQATEHVDKAKSILADLFPTIRSLDDEVREDLSEELNETD
Ga0210146_1011580	Ga0210146_10115802	F063812	MCAKHHESKKHEDAKPAPACHMCKEKYVYPEHPTPSGICHKCQTKIGVIILIIFVILGGIVFFGLI
Ga0210146_1012591	Ga0210146_10125911	F056356	LILALLASCGRDLEQAKRYSDIKSETDSLITQAKLIINEQKAINDSLVKVRDDIYKINTQKTKLPELDKKITKIVESKSNIENVRKHLEAIKKFAQNGEKATKRLIFYKRKYITYATEIQLHDENIMIQEITNGLSTKKYLSKYMPKEKK
Ga0210146_1013332	Ga0210146_10133322	F053838	MITLLMSWDFWSLCVPLIVAHFCASAKTAGRADLFLGMERDLPTAPAGDMGELVHLSH
Ga0210146_1013590	Ga0210146_10135901	F045836	MESPNAFTALGYYVASSFLDPIQWLLCGICGWKMEKIHQAMIAGAAMVSLMFIIMIYLYPDVKLFSFPSPHVGITILGRAIGAALMSALI
Ga0210146_1015273	Ga0210146_10152732	F098776	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSET
Ga0210146_1016799	Ga0210146_10167991	F061489	MVNIGFMIAGVLGAVVGIFLLAPSTYVGTVLGAMFLLGGVGVFLMGLLRR
Ga0210146_1017132	Ga0210146_10171321	F042655	DLKTFEITIPQQYLDHINREIKKPKRPNTELLELWLERELSIENEGSYGNLPTDESHVTVEVLPNGNYKVVISDVVFGMIKSHVQPEPHSHKIQNEDLFHCWLDLRTNKVYLEEHIKVKETA
Ga0210146_1019062	Ga0210146_10190622	F092299	EVTKDDARVSGFTTKRGTVKYVTQAPPHLLEGEYQQKRARTRYDIRFEAISDTRTSVSIDVNIQPQGLRTKLQGPLPRLRVKGQLNDWLEQVQQHFEVKQK
Ga0210146_1023361	Ga0210146_10233612	F096508	MKKQRTKPAELLKLLAKHDLQKYDICKICGVSAATAERYVKYGIPEAQYRLIALSLGDL
Ga0210146_1023872	Ga0210146_10238721	F016394	RQRYSEEKRKMQNEELANLAKKVRNHLPNVESFPIATIYTTIKEQEKTKLNLPDFKQLIYHLTGWDISFQIIRRQLEINQIVW
Ga0210146_1029754	Ga0210146_10297541	F085863	RYEDEEVTPRPVLETDEETQPAEEDLRPRNILRVELSGDDCEIVCGQIRSKARDRIEAYCRERGFSVSDIWYWEDDVMARLVGPTWTVWYDVDDFFHETGILGRTASSFSIIVTVDGEAVEDLNARKIKTARTEYGSKPAPGKDHVAVTAGTIGEGRYAFELDIDGEFVTAKLEFAFLDLSNLGIEERLLVDVRYDG
Ga0210146_1029927	Ga0210146_10299271	F071376	LNPVGLWTLHFDWGPTGNYYWTPLYFNFDGTFAYLGGANEGSWTQVDDNIVWRFKRLPETENNTVYSGTTSRNFMSGIMFSFQGEKGHWFAIKKGTKVYSQTQNTSLPYLVDKESKPKLDPAGRKKE
Ga0210146_1031522	Ga0210146_10315222	F004285	MSLSWISNRSLKVSPKARLVADDEAAALRRKLESIEWRPSNGFLRDQVTPRTQYSTSRAGYAG
Ga0210146_1032692	Ga0210146_10326921	F020727	MMKYQVLVKTISGKGGEFWEAFRKMPTEPMKGVMIESSWSLFGYWDFVIFFLADSNENGLHFVGEVLRAIPGIADTSTSPMTVLKEHKKQ
Ga0210146_1035517	Ga0210146_10355172	F068761	QQNLPSPYIQGALTALSERLLPLLATTSAIPTTTYAQQVAPETQLQQQARDLAGGLGGYQQYLQQAE
Ga0210146_1036274	Ga0210146_10362742	F089952	MTMTLAEDLNQEKIQWVIENIDELFLDLEENENDTY
Ga0210146_1039404	Ga0210146_10394041	F059187	VTPNKPKRLKGLSQKASSQARVLLSGPTRTNALPVYRANLNHPVNSAEHGNAVGPARPHDWADLTARRVRGRSIGRTEEANASGNALDMPTSVWSILARELVEP
Ga0210146_1040401	Ga0210146_10404011	F018997	MTKKNTPLGTLSAQELQLIERLREHPGLMERFQTLLEISANAEGPVKSADEVEGLLIEEMRRLGNTTMGDWATSAEKRLADQLE
Ga0210146_1041309	Ga0210146_10413091	F025881	MNPHVIEVTVGEIAEKLRNLGIGSDETVRLTVEPDRELIPGRRASRANVVAAGLTDSDIDRLIKQAQHEVEPYTTQ
Ga0210146_1041655	Ga0210146_10416552	F027427	MIPKLSDFVDSDRVPKGSAVRRGRRNLFAGRLNGSKAAQILPESPGRQCPTTETADAACEEVLETPGALTKPGWLLRRPMRTADPIGPFGKNPN
Ga0210146_1045662	Ga0210146_10456621	F068997	MTKKVFSVLSMLIITSLVAGIPAIYAQTSPADFTSEPDKTMAAAHESFVKKNLNKAAEQISKAADYVKKDADKVATNA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025963: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences