NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025726

3300025726: Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8d (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300025726 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133460 | Gp0293451 | Ga0255258
Sample NameMetatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8d (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size15686503
Sequencing Scaffolds9
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000191Metagenome / Metatranscriptome1666Y
F000344Metagenome / Metatranscriptome1257Y
F007472Metagenome / Metatranscriptome350N
F023855Metagenome / Metatranscriptome208Y
F036098Metagenome / Metatranscriptome170N
F056317Metagenome / Metatranscriptome137N
F078620Metagenome / Metatranscriptome116N
F082152Metagenome / Metatranscriptome113Y
F082176Metagenome / Metatranscriptome113N
F086577Metagenome / Metatranscriptome110Y
F102558Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0255258_100172Not Available2913Open in IMG/M
Ga0255258_103042Not Available894Open in IMG/M
Ga0255258_103478All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila840Open in IMG/M
Ga0255258_103967All Organisms → cellular organisms → Eukaryota788Open in IMG/M
Ga0255258_105167All Organisms → cellular organisms → Eukaryota693Open in IMG/M
Ga0255258_108585Not Available538Open in IMG/M
Ga0255258_108937Not Available527Open in IMG/M
Ga0255258_109297Not Available519Open in IMG/M
Ga0255258_109497Not Available513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0255258_100172Ga0255258_1001721F056317KSLAIPVRMELLSGFRQQQSQPPPSAAVAAPKTPSPPAESSALTADSELEIISRLPQGKQLDILTKAPSFKLLAETLRGAKFERLRCDFPKREIRAEWFRDLPTDQRLALERLFKTVFSDEVLDKYEEFIRAAFARGEGLSAITYRKSYFSLVSLITSLSGRHNSNVEPRLLASVMQARRRLLDHADSWNKETTLASNLSESDKILRTMNSTPPEVVMKMLYFLLETQKIWFNLNFSKRHVQEHEVKRALGFVQVALLVARPVSRAETLVNVTLATVTKQLRQPGQLCWTFEVIPVCLCS
Ga0255258_103042Ga0255258_1030422F078620VLHAASLKNLNSAAAPHDETFMYHGVDCGPVVMFKNRKQWPTPPTKGFTATIDALDNTAQLLSEYQLKEKLPGTGLDEPFEAGADVTGGGT
Ga0255258_103478Ga0255258_1034781F000344MRPRHPHAAESGVGKHTARESESAKACADGEERVANAHSRPNWAK
Ga0255258_103967Ga0255258_1039671F007472LIAAMAVDWYSYKVEFSYTRVASSDTSLASTLYNYTQTNFDMFGQTVNVQTANNNKIVRTTQQTYAQLGATNVNQQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILIIALLIVVSAEIIAFLAFLGLSDKIASDSPNCLTGPCQKFSDTVTTQLGVNALTIGNEASVLATLQSVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0255258_104622Ga0255258_1046222F000191YTVGNLVNQHVRFIETGEKDPLMTHEKALITQSRGQEIPGLD
Ga0255258_105167Ga0255258_1051671F007472GKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKIEFSYTRVAASDTSLASTLYNYTQTTFDMFGQTVNVQVANTKIVRTSQQTYAQLGASGVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLVVVVAETIAFLAFLGISDKIAKDSPNCLNGPCQKFADTVTTQLGLSDLAISGGNVAVSLQQVATWGPTAGWYLVLATI
Ga0255258_106146Ga0255258_1061461F082176GTSFALSVMSEWPVLDEHYVCLLSLGHLESQASLVWTGSGSVGICAFRDTAMFETGTASLAIRHDVHEFSIDAGTVQFVPAVSVVKISPSAVQAGVKSVLEIEVDVDCDCRAGLECRLGQARAPAVCSAGSRSLRCTIVPVGAGVRAFALMMDGQALSRGTAHAEDATVTNAPPDESTADGRMAILAIELS
Ga0255258_108585Ga0255258_1085851F086577VAGLPDFGSFGLTDLVTEMAAPANGSSFARLKTLGATVIATQSWTVIGDVRVVSFAFSVLMETDAAGNRKFSGSVQGSISIGRFTFGAYVPFNKPGSQMEFVLPEVTVNGVNVNELFGVGTTVSVGADDVENLLAGAGAEVTARVKAELAQKAAELKALAKEQLRANLLAPLQELQARA
Ga0255258_108613Ga0255258_1086131F102558AALLLFEDGAGVAAGMSDRREGSHGSAAVGSAIVSEDDLQCCQNALSIFGDQSIEEVFTDDAEDFTVNVACVARAVQEAAVFSQLRPKLLKPFQGADKMYEVVLVLKRLYEGQGSRSQAVEAVTSSGLEGLEQRTLVAAALLLFEDGAGVAAGMSDRREGSHGSAAVGSAIVSEDDLQ
Ga0255258_108937Ga0255258_1089371F023855VTQYDGNLKTERYGEVRVVSLSSLIELYQGFNFEGVQKYGSRDVTESSLVSSCSKDNLAGRRATTFQIRNQ
Ga0255258_109297Ga0255258_1092971F036098VDVQGKSMLEVLETLSAERKAADDDRKQVQTRLQGVSSDVEAVQAQSAKQAETVSGLLLKVADFEGVKPAVQADMERLQKQMSEEAQGLAGRVETLQAAVEQSGKESEGLLLASLMKLQEEVDGKIGAVKGEVDVQGKSMLEVLETLSAERKAADDDRKQVQTRLQGVSSDV
Ga0255258_109497Ga0255258_1094971F082152PKVPSAVVKKPDGYVSVIVLLVASAPPAVVVNENVAAAPVLPATRSDVAIPNKALVT
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