NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025525

3300025525: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_5A (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025525 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053062 | Gp0055519 | Ga0208244
Sample NameSerpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_5A (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size144067389
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album1
Not Available2
All Organisms → cellular organisms → Bacteria8
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforegula → Desulforegula conservatrix1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSerpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → rock
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: California, McLaughlin Reserve
CoordinatesLat. (o)38.8739528Long. (o)-122.4391613Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018837Metagenome / Metatranscriptome233Y
F025775Metagenome200Y
F040940Metagenome161Y
F045540Metagenome152Y
F048134Metagenome / Metatranscriptome148Y
F048673Metagenome / Metatranscriptome148Y
F050470Metagenome / Metatranscriptome145Y
F077452Metagenome117Y
F079717Metagenome115Y
F084897Metagenome / Metatranscriptome112Y
F089856Metagenome108Y
F098192Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208244_100001All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album1093042Open in IMG/M
Ga0208244_100153Not Available86916Open in IMG/M
Ga0208244_100179All Organisms → cellular organisms → Bacteria80319Open in IMG/M
Ga0208244_100301All Organisms → cellular organisms → Bacteria54810Open in IMG/M
Ga0208244_100399All Organisms → cellular organisms → Bacteria45491Open in IMG/M
Ga0208244_101370All Organisms → cellular organisms → Bacteria13515Open in IMG/M
Ga0208244_101691All Organisms → cellular organisms → Bacteria10572Open in IMG/M
Ga0208244_102391All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforegula → Desulforegula conservatrix7238Open in IMG/M
Ga0208244_103969All Organisms → cellular organisms → Bacteria4279Open in IMG/M
Ga0208244_105096All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans3312Open in IMG/M
Ga0208244_106344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2668Open in IMG/M
Ga0208244_110038All Organisms → cellular organisms → Bacteria1649Open in IMG/M
Ga0208244_114172All Organisms → cellular organisms → Bacteria1178Open in IMG/M
Ga0208244_116031All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1060Open in IMG/M
Ga0208244_117601Not Available981Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208244_100001Ga0208244_100001520F045540MSVISMGGNDMSKYIFTLATLLDSKSKIKKHYSPDTVIADLFDENLDEIDFIKSLPELELIYGFEIPADLYDKTDLTLREFADELSQLTIITEELYPEFFDIKFTSLKLTKRWIELENKTDEDSLREMQIINEKFAELDDRLNVVLGNVLIN
Ga0208244_100153Ga0208244_10015330F025775MKQLFTFQGFPMVVVTAMIIWAWISVLSVLIASFF
Ga0208244_100179Ga0208244_10017960F077452MISITNLNRIKKSVETHLKSGDLELVILPRVEYNALLEKLDDLKDIHDSVEALIEYRSGKRISFDRYDRRRKAKRVQDRPS
Ga0208244_100301Ga0208244_10030129F025775MKQLFTFQGFPMVVVVAMIVWSWISVISVLIASFF
Ga0208244_100399Ga0208244_10039920F089856MRNTALFALPVLAALLLSGCASLGNRTPATGPIPCTYRFKMLTRAEDQARVEAAINAVAVGPVTKSGTVTFPEYRFRVKRLADLDALHPKLLFAKPATAFTPNRQQTVNLKSAGVDVTFDSTDVSASATTTISFNIKPGSRLYYKHPGGVESDITAKVDKNGKVTFPTTIKEGQKHIHARAVKDNVIRYIRVNIFTNEVTDIRKSDY
Ga0208244_101370Ga0208244_1013708F084897MAKSDAFVETSKSRFEVADASEVSLGVGGTFRAEQIGTLGVDSGGSN
Ga0208244_101691Ga0208244_1016919F098192MKCPLRINSEGNALDCYKDECAWWVADAEIEGSKTKGTCAVLEVAVNGIFVTIGDDEEVDFYA
Ga0208244_102391Ga0208244_1023914F040940MGTLNNIFNLVFGINLILVGVVAFISGIVSLAKRNESVRKLTSITYIIAGVAAVYFGVVLTSSAYNM
Ga0208244_103969Ga0208244_1039691F079717MPRGKMVYVSERAHRRLRLLAAQHNRPMGKIVEDLVADEFAEMANPWTGPEGLWLQQQALAEAWDDPALDVHGEA
Ga0208244_105096Ga0208244_1050962F025775MKQLLTFQSFPMVVVTAMIVWAWISILSVLIGSFF
Ga0208244_106344Ga0208244_1063442F048673MRTFAMLLILVAIAASQPHHWLAVLMAAIARCIGR
Ga0208244_110038Ga0208244_1100384F079717MPRGKIVYVSEGAHRRLRLLAAQHNRPMGKIVEDLVADELAEMANPWTGPEGLWLQQQALAEAWDDPALDVYGEA
Ga0208244_114172Ga0208244_1141722F018837MTTIFDDLHKRYGAASAEQKLVVLRRELLRPIITVETSAHLLQTVGDQICNCLPDEISPEEFKNTITWLNEAARDLHQVLDALTADVSQVQGQHGIK
Ga0208244_116031Ga0208244_1160312F048134MNKEKKIQLNLAIPERHRNLLRRMAAERTMENPSQVFSASGIATEMLLSSLNDIGKFNIKKEDEK
Ga0208244_117601Ga0208244_1176013F050470VGLAARGARNLTGKVEKIEDQDALAQVRRQARRVVFKAFLAAIPLTLIAFALPQLW
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