NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025323

3300025323: Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.1 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025323 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0056900 | Ga0209542
Sample NameSoil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.1 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size2291696989
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea5
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → TACK group1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1
Not Available3
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Archaea → DPANN group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.534762Long. (o)-107.782602Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000409Metagenome / Metatranscriptome1171Y
F003477Metagenome / Metatranscriptome484Y
F005787Metagenome / Metatranscriptome390Y
F025141Metagenome / Metatranscriptome203Y
F065251Metagenome / Metatranscriptome128Y
F080249Metagenome / Metatranscriptome115Y
F094045Metagenome106Y
F094578Metagenome / Metatranscriptome106Y
F102416Metagenome101N
F103989Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209542_10003260All Organisms → cellular organisms → Archaea34939Open in IMG/M
Ga0209542_10003407All Organisms → cellular organisms → Bacteria34035Open in IMG/M
Ga0209542_10071083All Organisms → cellular organisms → Bacteria4102Open in IMG/M
Ga0209542_10080237All Organisms → cellular organisms → Archaea3742Open in IMG/M
Ga0209542_10189638All Organisms → cellular organisms → Archaea → TACK group1941Open in IMG/M
Ga0209542_10268535All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1485Open in IMG/M
Ga0209542_10273830All Organisms → cellular organisms → Archaea1462Open in IMG/M
Ga0209542_10279480All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1439Open in IMG/M
Ga0209542_10287957Not Available1406Open in IMG/M
Ga0209542_10312529All Organisms → cellular organisms → Archaea1319Open in IMG/M
Ga0209542_10330297All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1263Open in IMG/M
Ga0209542_10341575Not Available1230Open in IMG/M
Ga0209542_10460558Not Available972Open in IMG/M
Ga0209542_10543610All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium852Open in IMG/M
Ga0209542_10666158All Organisms → cellular organisms → Archaea → DPANN group724Open in IMG/M
Ga0209542_10828347All Organisms → cellular organisms → Archaea607Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209542_10003260Ga0209542_1000326010F065251MYLRSFIKGRKRYYYIAKAVRKGLQVIQKSVLYIGTADTLYEKLKNLKKK
Ga0209542_10003407Ga0209542_1000340712F000409MMTNEEKIKAAARLLIRLHGSQAIAIAEIKAEHFLRAGDKLMYVVWCWIAESTAELLRPLPKAGERVH
Ga0209542_10071083Ga0209542_100710833F005787MHQKNTKASLVYSKETMCLHCHLIVIMFHERDADPVKGAWNCPKCGHVYPFAHWKIRKQSDKKKVAS
Ga0209542_10080237Ga0209542_100802371F102416MGEIATNGDITMGEDDWGMISKNPPMYESGVDDAVIEVTDIENKIHKITFKKGGVLNVGREGNTLYIAWDDSDTI
Ga0209542_10189638Ga0209542_101896382F103989MNMEKSAIKESKNHQEFDGEINATDIFMRDLRRSYPEFAKALEEFMKTELQRLDEELK
Ga0209542_10268535Ga0209542_102685351F102416MGEIATNGDITMGENDWGMISKNPPMYESGADNAVIEVTDIENKIHKITFKKGGVLNVGREGNTLYIAWDDSD
Ga0209542_10271833Ga0209542_102718332F003477MKDFEPLEPFENKELLNEILSKLENFEYKLYSRIKIKFFRGKPTKYEFDLNLGVMHFTEKDFSGLSKIFSEINKKWKTQMTYCIYPAKDQRAMIINVRGSPKAPSDLS
Ga0209542_10273830Ga0209542_102738303F065251MYLRHFAKGKKKYYYIAKAVRKGASVIQKSVLYIGTADTLYEKLI
Ga0209542_10279480Ga0209542_102794802F094045MRYASIFFTILFIWLAVVLMALTRHNSSEIFELYIAVMICTVLLFLIGFGKK
Ga0209542_10287957Ga0209542_102879572F065251MYLRSFKKGKKRYYYIAKAVRIKDRVIQKSVLYLGTADKIYKKLKSQK
Ga0209542_10312529Ga0209542_103125293F065251MYLRHFTKGKKKYYYIAKAVRKGVSVIQKSVLYIGTADTLYEKLISLRKK
Ga0209542_10330297Ga0209542_103302972F094578MNNQKERPKWPLQRLKGMYFAMHCWKCRKFELPMEEYKQRCEDNIQKIIDSLEIKEMKFKEFNDIIKGATFCKFDKRDFSNNCPICKKFGIKSWSC
Ga0209542_10341575Ga0209542_103415752F065251MYLRSFKKGKKKYYYIAQAVRKGKRVIQKSILYLGNADNIYKKLHTK
Ga0209542_10460558Ga0209542_104605582F025141TTMITCEYCPRGFVESPNGLVEKTLHEVLHSPEVVNK
Ga0209542_10543610Ga0209542_105436101F080249MADDKNKKKEDANLISFKENYEVYYAVNQLKKEFPDETKADIKEALFDAAKQVKPSEGREKIMRLVRKDLKD
Ga0209542_10666158Ga0209542_106661582F065251KGGKKYYYVAKAVRKGIRVIQKSILYIGTADTLYEKLIHLKKK
Ga0209542_10828347Ga0209542_108283471F094578MDSKKERPKWPLHRLKGMYFAMHCWKCKKFELPMEEYKKRCEENIQKIIDNLEIKEMKFKEFNTIIKNSAFCTFEKREFSNNCPICKKL
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