NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300025220

3300025220: Marine microbial communities from the Deep Pacific Ocean - MP2159 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025220 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0053876 | Ga0208055
Sample NameMarine microbial communities from the Deep Pacific Ocean - MP2159 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85082372
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F142
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
Not Available8
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthwest of Acapulco, Mexico, North Pacific Ocean
CoordinatesLat. (o)12.0Long. (o)-108.06Alt. (m)N/ADepth (m)3103.11
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000060Metagenome / Metatranscriptome2944Y
F005684Metagenome / Metatranscriptome393Y
F006552Metagenome370Y
F013190Metagenome / Metatranscriptome273Y
F013420Metagenome271N
F014192Metagenome265Y
F031535Metagenome182N
F032810Metagenome179N
F040684Metagenome / Metatranscriptome161N
F041257Metagenome / Metatranscriptome160N
F041826Metagenome / Metatranscriptome159Y
F049047Metagenome / Metatranscriptome147N
F060979Metagenome / Metatranscriptome132Y
F065861Metagenome / Metatranscriptome127Y
F066848Metagenome / Metatranscriptome126N
F071317Metagenome / Metatranscriptome122N
F076171Metagenome118N
F076187Metagenome118Y
F078841Metagenome / Metatranscriptome116N
F080654Metagenome / Metatranscriptome115N
F082562Metagenome113N
F089571Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208055_1000452All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix10475Open in IMG/M
Ga0208055_1000711All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F148155Open in IMG/M
Ga0208055_1000827All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F147491Open in IMG/M
Ga0208055_1001897All Organisms → cellular organisms → Bacteria4385Open in IMG/M
Ga0208055_1002655All Organisms → cellular organisms → Bacteria3513Open in IMG/M
Ga0208055_1003448All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus2966Open in IMG/M
Ga0208055_1004351All Organisms → cellular organisms → Bacteria2529Open in IMG/M
Ga0208055_1006540All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1929Open in IMG/M
Ga0208055_1006823All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1873Open in IMG/M
Ga0208055_1008304Not Available1632Open in IMG/M
Ga0208055_1009651All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1470Open in IMG/M
Ga0208055_1010878All Organisms → cellular organisms → Archaea → Euryarchaeota1355Open in IMG/M
Ga0208055_1015132All Organisms → cellular organisms → Archaea1070Open in IMG/M
Ga0208055_1016416All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1011Open in IMG/M
Ga0208055_1016535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium1005Open in IMG/M
Ga0208055_1027165Not Available699Open in IMG/M
Ga0208055_1028401Not Available676Open in IMG/M
Ga0208055_1033357Not Available598Open in IMG/M
Ga0208055_1034621Not Available581Open in IMG/M
Ga0208055_1035186Not Available574Open in IMG/M
Ga0208055_1038015Not Available539Open in IMG/M
Ga0208055_1039982Not Available518Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208055_1000452Ga0208055_10004526F089571MIKKERKMYQNIIVLMIPILFLIAPAKSQHVKQKYATTEMDEKVILNENGTWEYLGEDKQDYTLKKVPPKIYNYDSTPQTWEERTEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIHEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN
Ga0208055_1000711Ga0208055_100071117F013190RTPNFMSLSQLYFSNAELGQEISISATCDGSIPLNEMPSTVASKVASSTNVDIAEIMAFHSSEVFVLAENSNLIK
Ga0208055_1000827Ga0208055_10008271F078841MFDDSDVVHSESRSDKAKRAISEYLDEYGQVRATELKKEVCDELGICSEKIFYRCLFELVKSKRIIKNEQNRGNVSYYKPDWGVYENMINTDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFSNIMGMYASMTLITQQPSKAKTSAVITSTLKNTIPELLEMFSIALEKCGKNRSRILSSLMDYRDGNMGGGWVLENHPDFKK
Ga0208055_1001897Ga0208055_10018971F065861LIYRENSFIFNLPFRVVLFMIRGEIIGRNNISAAIPTLEEGLLHKNKL
Ga0208055_1002655Ga0208055_10026553F071317MLKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKSELKSSDSISQRFVTDLDIFKIETNYIACFGNYDPGPMASLNLPLLI
Ga0208055_1003448Ga0208055_10034485F006552MNQYPTVWEATPNVEIPLLISPVLKIKSSRINPAANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPTRFKIISKKNSNYADSVTVLNKV
Ga0208055_1004351Ga0208055_10043514F060979VTTTTEDEQLASIALGDGDDDSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSKLLGGLLRFLGGTGFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLEWSSPTTGGPAEKYVLEGRKDGRWGELLDFDAENTRAAVPTSEVEGAEAWRLRAVNDHGMGKPSDAPLTDTPKRAGNDTPDE
Ga0208055_1006540Ga0208055_10065401F089571MLKNIIVIVFTVLFLVVPASSQHAQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNAEYENLIKHIDKLEGHGPIKVSYDMGDGIIETVTFEEVWLKINPYNGEPTRILRKINLLKNE
Ga0208055_1006823Ga0208055_10068231F014192FFFLYLDCIPFLTRKIKNNKIENEKKFINVKLYGEKPSIVTAPSKKGAKNITKNLLFNKAIKIKSLLLRN
Ga0208055_1008304Ga0208055_10083044F013420MDQPSDIRQVRIPTVAVGLMLSVAVIVGTVTWSSARLVARIDHLEATVSSIEQTMDMNAYARAADLEDLQITVNYLSVALDDLGDMIDDDWSVED
Ga0208055_1009651Ga0208055_10096511F031535TRAYVAIASANQLRGLTNEVNHFQVPFKTFEFSTVNIK
Ga0208055_1010878Ga0208055_10108782F005684RVQRPLGEGAGGSLTVFDTEESPLSLMQVVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPHRSKSKQVRMASTGPGRMHS
Ga0208055_1015132Ga0208055_10151321F076187SVIICPDGLVSVAITHFFEFISTEKFFENFKTSRNVKSFPNIPLIPDTDIFNASNLDTLFINSERK
Ga0208055_1016416Ga0208055_10164161F082562QASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKLFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLISQLTLGVKI
Ga0208055_1016535Ga0208055_10165351F066848MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDSVLRTVLKGARQIAADQRLPVDPVAKGAGSEPELNLVA
Ga0208055_1027165Ga0208055_10271652F041826RENFLRTRNSPMALQRMEMAIPDTSVCGIDSYDTASKVILHQW
Ga0208055_1028401Ga0208055_10284012F040684MKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNRANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNTSINKKNCTNCAKSPWWKFWGKKKGC
Ga0208055_1033357Ga0208055_10333571F041257MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSP
Ga0208055_1033692Ga0208055_10336921F000060MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLDEAFELTHDEIKILKKLIKELYAVAEPTRIKGYTDEQMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLI
Ga0208055_1034621Ga0208055_10346211F032810MTDDKRKKIELCFDSVEKIVSLKAALTRAVANISDNLETAIERLEHRQFVLEGDPYADCALNEGLMKLDSKDIEYIQRQYTDSLWETMQILLPHYRTTKE
Ga0208055_1035186Ga0208055_10351861F076171IAFPDLNLSWFLTGKGEMFTENLDYAEKTILENYRKLPDEGKIGFEVRAKQYEREYLEYKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFFTNTNE
Ga0208055_1038015Ga0208055_10380151F049047MLCRAFSNPQMNXKFISRRNLIFFTSKTLGKAFIPDYPSLDEEQSKEVMLVTNDFIKEQLSSTPFHVRLGLTFIGFIFLCLILAIKSVQSFKKEKHSDGSIILSVIPLNKYLSSFARVYRTLTVLAFYEHPKVIKIIDSQHGVTRKLD
Ga0208055_1039982Ga0208055_10399822F080654VAEIISEETAESEPVGKTNLEERQDLWNKIQKFDPEASAMDYYDNGEWDLEKRRSDLKVLLEKKRFGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.