| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025065 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0067852 | Gp0122836 | Ga0208015 |
| Sample Name | Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 129410472 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 17 |
| Associated Families | 14 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 13 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Caribbean Sea: Cariaco Basin | |||||||
| Coordinates | Lat. (o) | 10.847 | Long. (o) | -65.114 | Alt. (m) | N/A | Depth (m) | 900 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007072 | Metagenome | 358 | Y |
| F008501 | Metagenome | 332 | Y |
| F039402 | Metagenome / Metatranscriptome | 164 | Y |
| F042291 | Metagenome | 158 | Y |
| F044014 | Metagenome | 155 | Y |
| F050310 | Metagenome | 145 | Y |
| F057299 | Metagenome / Metatranscriptome | 136 | Y |
| F060838 | Metagenome / Metatranscriptome | 132 | Y |
| F077964 | Metagenome | 117 | Y |
| F078611 | Metagenome | 116 | Y |
| F085587 | Metagenome | 111 | Y |
| F099149 | Metagenome / Metatranscriptome | 103 | Y |
| F103103 | Metagenome | 101 | Y |
| F105003 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208015_1000152 | Not Available | 47871 | Open in IMG/M |
| Ga0208015_1000222 | Not Available | 36926 | Open in IMG/M |
| Ga0208015_1000340 | All Organisms → cellular organisms → Archaea | 27586 | Open in IMG/M |
| Ga0208015_1000421 | All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon | 23804 | Open in IMG/M |
| Ga0208015_1000553 | All Organisms → cellular organisms → Bacteria | 18391 | Open in IMG/M |
| Ga0208015_1001561 | Not Available | 7988 | Open in IMG/M |
| Ga0208015_1002689 | Not Available | 5162 | Open in IMG/M |
| Ga0208015_1002866 | All Organisms → Viruses → Predicted Viral | 4908 | Open in IMG/M |
| Ga0208015_1003903 | Not Available | 3854 | Open in IMG/M |
| Ga0208015_1016184 | Not Available | 1260 | Open in IMG/M |
| Ga0208015_1020826 | Not Available | 1043 | Open in IMG/M |
| Ga0208015_1032687 | Not Available | 742 | Open in IMG/M |
| Ga0208015_1036062 | Not Available | 688 | Open in IMG/M |
| Ga0208015_1036126 | Not Available | 687 | Open in IMG/M |
| Ga0208015_1036812 | Not Available | 677 | Open in IMG/M |
| Ga0208015_1041669 | Not Available | 615 | Open in IMG/M |
| Ga0208015_1043690 | Not Available | 592 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208015_1000152 | Ga0208015_100015210 | F044014 | MNEDYKPRFSFEITEEQKFRADKLLDTYGLRKAIFGRILDDVLDIIEEYGGMAIGVMMKGKPREIIPSIKGVEEVGKK |
| Ga0208015_1000222 | Ga0208015_100022255 | F103103 | MPCVSLPSGKQGVPDGVICGFHPVYEFDGYLFEVHRYHGPTPLRRKDHEPRLNIPAGFWDMWKVFDALPDAAKRACLFKED |
| Ga0208015_1000340 | Ga0208015_100034027 | F007072 | VENKKGQLTIGDAPNVVLIIGLVFLTMATIAFISEKYGDALTENSTAYNVTQDLESEIGDNTSIAGIVLTISLVGIVLTVLIGIFVGFRGRV |
| Ga0208015_1000421 | Ga0208015_100042112 | F078611 | MVNRTTINIDKEIRDELNKCKKYKRETYDETLKRLIKDKKRLQKAQ |
| Ga0208015_1000553 | Ga0208015_10005534 | F085587 | MALGIEQIDDFVAGIHQKFAGEDRLAAQDISLPLQEYKYASRLFSGNLKKDTMSTSQCKWKVKVDTNDNFQVVGLYHKDTTGRVNVLSEGELKWGLTTNNYHYDIDEEIFQTGGRQIYDYLESLESDLMTSFYTGMEDVIFGAGPAASTTSPFPPVSLLWWITATDDSTSENNSEEGFDGFEPVGWSSAGVGGISCTTYEQWRNRTFPYTNVERDDFVEKTINSMDLCQFQPPVQRPDIVDQTRHDWELLTTHSRVAAGRRLLQLGNDNIGDDMAAHSGTVYIRGVPMNWVPAWTNSASANARTDGVILGVNWASFKCYYAQGRQMRKRKAFQHPEMSNVRVRCMDDSVQLVCFNRRSNFRGYCTATVTETA |
| Ga0208015_1001561 | Ga0208015_10015615 | F050310 | MPNMQAFIVGIVVVGITLVIGIYIAAQIGATMTAGSAERNASDEIVTALSNGTSWITILVVVGFAVIVLGMLTSGLGRAAEGVGPVY |
| Ga0208015_1002689 | Ga0208015_10026895 | F008501 | MQEMLVKKPAVDLTDLAIGIVVLGIVVSIGATILINVRDTSTANTTAYNLSQDAATGLAEYGNWFDIIVIVGVAAVVLSLIFMAFGGRTGGTGTSY |
| Ga0208015_1002866 | Ga0208015_10028666 | F044014 | MPDTGEYKPRFSFEITEEQQQRANKLLATYGLRKAIFGRILEDVLDMIDEFGGVAIGVMMSGKLKPRDVISSMKQAEEVGKK |
| Ga0208015_1003903 | Ga0208015_10039039 | F105003 | MKNENEIGQENYRKLIYFFENKIKVHFKNFDEIFYNGLIIDLDGKKLCMVFKERIRGTLPILLECVNPDSIAEFKEEGE |
| Ga0208015_1016184 | Ga0208015_10161842 | F057299 | NSMTNTKGEKELKTDWDELTASDSTKAVGHEQTLVAEEGTFVPRRNRVGI |
| Ga0208015_1020826 | Ga0208015_10208264 | F042291 | MPIFQAYNKRNKAWVKYKFTRRGWKALDVKQKNPKKPFKGIQIRGKRR |
| Ga0208015_1032687 | Ga0208015_10326871 | F077964 | MKKLLIITAIIFLLIPAMALAKTAESRTSPPTIQKIAPKTYYYNYNIQEIQKVPEGGGEAETFYQYNYVTIKGKPTKLKVQQAIAEASSSDDTAIVEEVAANRTIALERLANISAMTYAQINTHIENTFGN |
| Ga0208015_1036062 | Ga0208015_10360623 | F044014 | MTDEDYRPRFSFEITEEQKQRADKLLDTYGLRKAIFGKVLDDILDLIEDYGGIAIGIMMSGKSKPRDVIPLMKRAEEVGER |
| Ga0208015_1036126 | Ga0208015_10361261 | F039402 | MSLTDYSDLEQEISDAPEPKILARGSEVKARIIAVRSGVSDKNNAKWYQPTFDVPDDPMVVEFNDFFWDLADRDKIDPKQVQRGLHKFQKFATAFGIDYSRPFDWETDLIGLEGWVILGV |
| Ga0208015_1036812 | Ga0208015_10368122 | F060838 | MTMQYVLPTEEQKELMQKFRDKYETLYGELKELEASRGLSLALTKLEESAFWLNKSITKN |
| Ga0208015_1041669 | Ga0208015_10416691 | F039402 | MLTDYSDLEKEIAEAPEPKILPRGTEVKARIIGVREGISEKNDAQWYQPVFDVPAEPLVLEFNGFLWDLKDRDKLSPKMAARALSDFHKFAAAFNLDYSKPFDWVDDLIGLEGWVILGVKKSDEYGDQNTISKYVAGK |
| Ga0208015_1043690 | Ga0208015_10436901 | F099149 | MLVGVLISIMIAIVVGVNLVPSIVEAVNTASNTPNAATGLDGMLDVLEYVYVAVILLGAVAWIGGQS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |