| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300024997 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053054 | Gp0053702 | Ga0209334 |
| Sample Name | Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1335093 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Rifle, Colorado, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → land → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Rifle, Colorado, United States | |||||||
| Coordinates | Lat. (o) | 39.55 | Long. (o) | -107.97 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017153 | Metagenome / Metatranscriptome | 242 | Y |
| F042088 | Metagenome / Metatranscriptome | 159 | Y |
| F083517 | Metagenome | 112 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209334_1024 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 9125 | Open in IMG/M |
| Ga0209334_1101 | Not Available | 7368 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209334_1024 | Ga0209334_10243 | F042088 | MSLLRVRCYSDDRDHSSLRTVIPEDPVGSWCFLLDIRLEDLFPVRPFERPKFVRLQRGMAQVGFKKPQAFPDGFKNIPLRGIVFNLPKVGVGLRRENQFVHRLLFSVPGERSALDGSLLRKPGQDFL |
| Ga0209334_1030 | Ga0209334_10308 | F083517 | LGRARMFGARLWARMPPEYLAGLKAFAFQSGVPLAEYVRGMVHDHILQRGAAFRERGAALRALINAGKAWVIAYHECVAIAGVLPGKERRAELERLTWEAVKKAHEFIQTEEAAKNAKHRMLAIQAVALITRAEAEILADMDKAEVDQVVQRIEAALNVMDKIAGSAPAKGARSK |
| Ga0209334_1101 | Ga0209334_11016 | F017153 | MTIVVGDRVKNKLTQDLFKITKIENERVVMLEDEKGLVHIWFPKQHLGSFFEEVKGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |