| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300024037 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0132900 | Gp0272158 | Ga0233355 |
| Sample Name | Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q75 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 22778671 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → solid layer → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 40.2523 | Long. (o) | -123.026 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008145 | Metagenome / Metatranscriptome | 338 | Y |
| F010196 | Metagenome / Metatranscriptome | 307 | Y |
| F023884 | Metagenome / Metatranscriptome | 208 | Y |
| F036627 | Metagenome | 169 | Y |
| F040609 | Metagenome / Metatranscriptome | 161 | Y |
| F053496 | Metagenome | 141 | Y |
| F079081 | Metagenome / Metatranscriptome | 116 | Y |
| F092928 | Metagenome / Metatranscriptome | 107 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233355_100385 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 935 | Open in IMG/M |
| Ga0233355_100481 | All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium | 878 | Open in IMG/M |
| Ga0233355_101689 | Not Available | 621 | Open in IMG/M |
| Ga0233355_102013 | All Organisms → cellular organisms → Bacteria | 593 | Open in IMG/M |
| Ga0233355_102732 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 548 | Open in IMG/M |
| Ga0233355_102956 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 536 | Open in IMG/M |
| Ga0233355_103107 | Not Available | 530 | Open in IMG/M |
| Ga0233355_103677 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233355_100385 | Ga0233355_1003851 | F079081 | MIESFKHLEALAAERDLADVFLETDEQEHAVPAEMIVEALRKRRAVMRDCVERGRNSDGASMGRLVGGEARLLQQAFTEGRTFLDPLTIKAEL |
| Ga0233355_100481 | Ga0233355_1004811 | F092928 | AAFEEMVLAQGLGDADREAPRDEEGDRGPGAPAGRDHAPHMG |
| Ga0233355_101689 | Ga0233355_1016892 | F010196 | VTGVRLLIGVIVMGIAVPITLFLLLGLHTMPQLFTMATVTLLAWGVADLLSMILEKPRLQGRSPGKALKEDWDRRSQE |
| Ga0233355_102013 | Ga0233355_1020131 | F023884 | FVSNARQRNLGRVAYCESLPHRLWVTLSRVRTAKGAWDIWYLISNRGRRAQATAAEYARRFGCEQGFRDAKWELGFAQARIQNIRAWSRLFALFALALLVVVSLGGKLLVRGGAEAVALLRRVASRRRGRWDLSVVSAIVALLHTDKSLFAHLSPRITLDLEASLANVS |
| Ga0233355_102732 | Ga0233355_1027321 | F053496 | VSVTAEVVWTSLKAITGSAQRTFRAGLLVAEKAELMRLAIGRLSDMNRAALDLHSLRLKLRILRARARQLAPSYPQIEESGIPAEQYLLIQGVREELRLNPEEAMHWYRRARLIINDPATREAAPPIANHPDALAVWEYLDRSVDPSIVSRAFELP |
| Ga0233355_102956 | Ga0233355_1029561 | F008145 | MPVRGEEVASSIDAHVRESIERMVGEIRSSIEDVRVAVDQQLKAALQSVQADVNSITFLPQIRKSVVELEETMAAEAPVAAPAAPSVGGASRVKAAVQAIESGRSQVDVLNALLEQSLQFGSRAALLILRGETFSGWKGVGFSAQGGNDEMVKRFNAAPGLIP |
| Ga0233355_103107 | Ga0233355_1031071 | F036627 | MKSDTEIVETSNQNNQMQDIESFKTNPNSLKLDHRKLR |
| Ga0233355_103677 | Ga0233355_1036772 | F040609 | MQEGDALNALTFPALAFAGLLRRTRLFVPVRLRRGITTTTAAGTARAF |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |