NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022751

3300022751: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L212-509R-1



Overview

Basic Information
IMG/M Taxon OID3300022751 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0290987 | Ga0247817
Sample NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L212-509R-1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size677246339
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU1571
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas1
Not Available3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003605Metagenome / Metatranscriptome477Y
F010082Metagenome308Y
F027599Metagenome / Metatranscriptome194Y
F034190Metagenome / Metatranscriptome175Y
F041209Metagenome / Metatranscriptome160Y
F046210Metagenome / Metatranscriptome151N
F051903Metagenome / Metatranscriptome143Y
F060965Metagenome / Metatranscriptome132Y
F092248Metagenome / Metatranscriptome107Y
F094045Metagenome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247817_10003934All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU1577452Open in IMG/M
Ga0247817_10023934All Organisms → cellular organisms → Eukaryota2568Open in IMG/M
Ga0247817_10032795All Organisms → cellular organisms → Eukaryota2090Open in IMG/M
Ga0247817_10052638All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria1538Open in IMG/M
Ga0247817_10062590All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria1378Open in IMG/M
Ga0247817_10152533All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas797Open in IMG/M
Ga0247817_10156168Not Available786Open in IMG/M
Ga0247817_10164998All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes760Open in IMG/M
Ga0247817_10183427All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria715Open in IMG/M
Ga0247817_10218999Not Available645Open in IMG/M
Ga0247817_10283779Not Available555Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247817_10003934Ga0247817_100039348F010082VLLDQKNNNMLTPRLTNCKECITISNLIKDIDCKLSDLANLLYNNIVFMLNHPVEYSVYLDLLNYKRILLFKYCNPSYAGCYTVEMIASKVKLLKYK
Ga0247817_10023934Ga0247817_100239342F046210MKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAEAALKSCNVNS
Ga0247817_10032795Ga0247817_100327952F092248LLRLLLPLSDKVYLTSHDQVKPAHSPEGSPDHSKSVGATGGVYKGQGRNQHKLMTYAY
Ga0247817_10052638Ga0247817_100526381F041209VDPALCEQIASLRRKLRHQSGKHVLFLDETALRLSAAPNHTIVLPGEKPFIVAEETSAYSKRFDMIACCVGDRVLLPKIFTPKERAGADVKGINGPMLLQFIDDVLAQAVEGLDRYPLTLVLDRAPIHRDVDSIRQAFRDRGSESIKDIILLPPNAAKRVSPLDNALFHDWKEECRKHCPVTLRTIQRVMSDAWMKMKPGPHYRGSGITRTKDPYFDCPAPHEHRHGS
Ga0247817_10062590Ga0247817_100625901F051903MCEEIATVRRKFQRIGTRRILVLDETHRRIGDVTERTIVLPGEPSTIETSATTHYAPRYDMIACCTSKEVMPPMIYAPKERGKGIDTEMLLQYIRNLLAQSAGALDRYPLFLMLDKSTIHNEGKIIETFHDWGCQELVEVIKMPTAAAKRLSPLDNSLFNVWRQRALNGPPLTRTNIKQRMSDAWNSITERDLLPQYRHCGLMRRQDVYFDCPNPATHRHGS
Ga0247817_10152533Ga0247817_101525331F060965VPFVIPQINNVKLTLALLMTRFDANYSNDALALDDLTV
Ga0247817_10156168Ga0247817_101561681F034190VPTPLHLYLGIGNRIILEAFSELFGQERLQSALTSITTIHSAGCSGKSDLYDLNGPEISKFIKKECSTSILAAAGATSTITDSVKASHSVLSRWLRQLHHALLHSGDWTATDIDAWRMAVDDIQRHWQAEACSKPFPQLHMLRHSVDFAERYRFLGRASEAQIESCHATLNALFHRQHRNQSGNVSERLRRSLADAALRAVQPFLQQ
Ga0247817_10164998Ga0247817_101649982F003605MAVGDDANAAGLPLVPNTGEEGRVRWGAREINRTRDFIANVKSLIPIGKAAFRAAAGISQGTGDPTGGDDGDIYHKIV
Ga0247817_10183427Ga0247817_101834271F041209YVLATETSAYSKRYDMIAVCTGDRVLVPTIFTPKERKDADVRGINRSMLLQFIDDVLAQAVEGLDRYPLTLVLDKATIHLDTDAIRQAFHDRGSQSIKDILIMPPNAAKRMSPLDNALFHDWKEECRSQCPMTARTIQRIMNDAWERMKPGPHYRHCGLTRSKDPYFDCPAPAVHRHVS
Ga0247817_10218999Ga0247817_102189991F027599VLIDGVVNEAPVCKAVPPVEAANQESVPAEAVAANVTVPVPQRLPGVVPVIVGAALTVATTAVLAEVHPPLVTCT
Ga0247817_10218999Ga0247817_102189992F027599VDAANQEIVPPEAVAANVTVPVPQREPGVVPVIEAPAVTVATTAVLAEVQPPFVVCT
Ga0247817_10283779Ga0247817_102837792F094045MKYLSIFFTILFIWVAVILMAITRDDSAEIFQLYLAVMVSTLVLFLIGFAKK
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