NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022645

3300022645: Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300022645 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0132838 | Gp0267151 | Ga0232058
Sample NameMetatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size135651365
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Bioreactor Biomass → Anaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8719Long. (o)-122.2585Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000344Metagenome / Metatranscriptome1257Y
F014031Metagenome / Metatranscriptome266Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0232058_1392543All Organisms → cellular organisms → Bacteria817Open in IMG/M
Ga0232058_1428658Not Available811Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0232058_1392543Ga0232058_13925431F014031MRRQRGLIGLMGLAALVGVGFYANPTQALVTTEQSASILVFPKVVADGTRDTVIQITNTSNNMRHAHCFYVDGAAEDPGAPVGPLNPPRCMETDFDIWLTKQQPTHWVVSAGRWDDPTDPTCRTQSCNPATSGQNNGQAAC
Ga0232058_1428658Ga0232058_14286582F000344MRPRSALAALSGVGEHAARESESAQCRAAGKERVANAH

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