NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022144

3300022144: Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_31 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300022144 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114818 | Gp0238668 | Ga0213855
Sample NameMetatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_31 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56951643
Sequencing Scaffolds12
Novel Protein Genes19
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida2
All Organisms → Viruses → Predicted Viral1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → bayou → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Pennsylvania
CoordinatesLat. (o)41.5097Long. (o)-76.4485Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000212Metagenome / Metatranscriptome1580Y
F000251Metagenome / Metatranscriptome1457Y
F000344Metagenome / Metatranscriptome1257Y
F001602Metagenome / Metatranscriptome664Y
F001633Metagenome / Metatranscriptome660Y
F002706Metagenome / Metatranscriptome535Y
F020183Metagenome / Metatranscriptome225Y
F033681Metagenome / Metatranscriptome176Y
F046210Metagenome / Metatranscriptome151N
F056350Metagenome / Metatranscriptome137Y
F058120Metagenome / Metatranscriptome135Y
F065810Metagenome / Metatranscriptome127Y
F071274Metagenome / Metatranscriptome122Y
F082052Metagenome / Metatranscriptome113Y
F087278Metagenome / Metatranscriptome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0213855_1007451Not Available578Open in IMG/M
Ga0213855_1010136All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei641Open in IMG/M
Ga0213855_1021409All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1223Open in IMG/M
Ga0213855_1030310Not Available792Open in IMG/M
Ga0213855_1035243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1348Open in IMG/M
Ga0213855_1035560Not Available618Open in IMG/M
Ga0213855_1039435All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida776Open in IMG/M
Ga0213855_1070926Not Available591Open in IMG/M
Ga0213855_1074304All Organisms → Viruses → Predicted Viral3951Open in IMG/M
Ga0213855_1118277All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida834Open in IMG/M
Ga0213855_1119790All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales3974Open in IMG/M
Ga0213855_1121591Not Available779Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0213855_1006385Ga0213855_10063851F000212LSLLVITLLTTYTYAASLKTSCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPNCPKPKCELVCENPNCVPKVECCPCNNGGARVATALPFFKESETNKQCCSCAK
Ga0213855_1007451Ga0213855_10074511F033681YVLLIVYITSAFCGLPTTPKAADLNDHFGTEPTLGIYGPKPPTIGPSLMRRGAAAGLPITPIRNFEREIFPPNVKSGDLTNTSYDASRILTPTIARPKAEIKAQFLHAAVVKTPVQLGTVVQENTVTTLNRLDGKIYTKKVVAEKPVLGVLHTTKNVWTPHSATVDLLSGKLLGGADKPKYHGLK
Ga0213855_1010136Ga0213855_10101362F001633LPDATLRGMRMSRSHGGTVLTVAGRDLSSEASAPSSDAPCRERLAGRGADTPAISIVSRLHLYHGDGASFWLAVGPALRV
Ga0213855_1021153Ga0213855_10211531F087278ILNWIRSPCETESPKTLPFKKIDQLLPKKPMQTPEDRAKDIDNTLTWLRDRGVNLVAEQAPKFQGVDTISIDHRTPEQKARDVDDILNWMRNPRENDSPKAEPFKRIDQLLPKKPGQSPEDRANDIDNTLTWLRNRGVDEPQFGPEEPFKNAKNVPVPDNRSPEEKLADLDDILNWVRNPKENDTPQTEPFKRIDQLLPKKPGQSPEDRAKDIDNALTWVRNRGVDQPE
Ga0213855_1021409Ga0213855_10214091F056350KLSLFSFVGYFVTLGVSFHDFMSLFGFFTFLIIANQLVSGTMLAFSLVPESMMVPIVRDEEDLEDLYTDDFFWLHERGVDLLFIFVFFHLLRKLYLVILDYEQEFA
Ga0213855_1030310Ga0213855_10303101F000344MRPKHPPAAESGVGKHTARESERAQACANGKERVAHAHPQIWPR
Ga0213855_1035243Ga0213855_10352431F065810LNSFQNKYIYYAIDDILETFQNSPVERDQLLGLIYSPILSLQNHFSINFFDIWIRQVYIEEIVKPNKFLTKESEGFIQFTSITIEFIYNVKAPVKKPEALW
Ga0213855_1035560Ga0213855_10355601F082052ECEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPNCPKPKCELVCENPNCTPKVECCPCQGGASGVSPAFPFFKETETNQQCCGCGKFRTGSGAPSENPSIVGVNGSLTNTFPSTQIVDNGTHFLRLDKRAKVEMFKTGRPIGTGQYGGTNGNNRDWETARPSLNLDLVHKDRY
Ga0213855_1039435Ga0213855_10394351F001602IFFLGMLSIAHSSLLKSQCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPNCPKPKCELVCENPNCVPKVDCCPCGQGGSRVANPLPFFKESERNPTCCGCSKPLRLVSPDNANTSKSTQIHDYGTHVVQYDSVSTQRPFKNPRQIGDAFYDRPDNLFKSFDQTAAPRIVN
Ga0213855_1051248Ga0213855_10512483F071274VTNLWTNVEDLGDYAESDYAYDAVKTASFLMWALSGRKFSGVTTVTERYVSTQDPY
Ga0213855_1070926Ga0213855_10709261F046210IVANIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAGVAVKGCNVNS
Ga0213855_1074304Ga0213855_10743047F058120MIPAGEFGETLLETIKSKDALKSFTQVQQFRESMRDTTVGADYVAWISEPVNLTRVHKALAEDLSVPPRAMAIKRVLMSRTQRAVLLTQAMEIAIKRVYNL
Ga0213855_1095729Ga0213855_10957291F000212KIYVLLVILLTSYASATFMNTQCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPNCPKPKCELVCENPNCVPKVECCPCGMGGARVANPLPFFKETESNKQCCSCNK
Ga0213855_1096598Ga0213855_10965981F000251GFGEVWVKTMSDPKAFKIIHNIDRAGCCWFPTLCFCAKGQKARSYMVISENFIHGNNSCPVGVCCCLRDIPYTMYYDRQPFAETMCERSCKSILGGGDFVTEHDLCYCCYVIPCMPVYDILCRPCWGGYVARVSSNRSKELCFLLETRCCGHTAVPIMNFVGDSVKAKDAMTIELAMFRKNGGGEWALP
Ga0213855_1107470Ga0213855_11074701F000212LTLIFVVLLSSYVQSSSLKSTCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPNCPKPKCELVCENPNCVPKVECCPCNNGGARVASPLPFFKETEMNKQCCSCAK
Ga0213855_1118277Ga0213855_11182771F002706FVIKAALLLIFTTNILASMLKTGCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNALCDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPNCPKPKCELVCENPNCVPKVECCNCNNGYPRVNTQLPFFKETENNSACCGCGAPSEIPNIDGINQALLLKQPKTTFIDSGSHLIRHEKTYDVQLLKSGVPLNQGQYIRTTGKNPHFDRQQPLLNLNLAHRDILNH
Ga0213855_1119790Ga0213855_11197903F020183MSLTVNAKTYNADSFQQNAVGYIGTLKTVSVKDDLALRRTSPKSTDAFSGVGRTSAKLTRTLTLTGAKTLAGDCIAEMSVSVPVGYAGADVDAVLNDMGAFIASASFKAHVKSQQVSF
Ga0213855_1121517Ga0213855_11215171F000212MVYSKCHPQCAWKCDDPKCPAICEPVCEQPKCHTSCAEPRNAVCDVKCEQPHCTIKCPDKGCSALDCPKCVTVCSQPNCVTHCQALKPECEAVCEEPRCDWKCHKPQCPVPKCELVCENPNCSPQVNCCACNNAAVGVYNGMMFKETEKNPTCCSCNGNNAPQQ
Ga0213855_1121591Ga0213855_11215911F000344MRPRHPHAAESGVGKHTARESERVQACAAGKEHVTNAH
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