| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022041 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110155 | Gp0206241 | Ga0196881 |
| Sample Name | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N (v2) |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 2299817 |
| Sequencing Scaffolds | 26 |
| Novel Protein Genes | 30 |
| Associated Families | 30 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 11 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | N/A | Depth (m) | 108 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000166 | Metagenome / Metatranscriptome | 1810 | Y |
| F001477 | Metagenome / Metatranscriptome | 687 | Y |
| F001808 | Metagenome / Metatranscriptome | 631 | Y |
| F001834 | Metagenome / Metatranscriptome | 628 | Y |
| F003749 | Metagenome / Metatranscriptome | 470 | Y |
| F004639 | Metagenome / Metatranscriptome | 429 | Y |
| F005585 | Metagenome / Metatranscriptome | 395 | Y |
| F007162 | Metagenome | 356 | Y |
| F008551 | Metagenome / Metatranscriptome | 331 | Y |
| F009745 | Metagenome / Metatranscriptome | 313 | Y |
| F013411 | Metagenome / Metatranscriptome | 271 | Y |
| F013635 | Metagenome / Metatranscriptome | 269 | Y |
| F015329 | Metagenome / Metatranscriptome | 255 | Y |
| F016268 | Metagenome / Metatranscriptome | 248 | N |
| F017776 | Metagenome | 238 | Y |
| F018187 | Metagenome / Metatranscriptome | 236 | N |
| F018483 | Metagenome / Metatranscriptome | 235 | N |
| F029798 | Metagenome / Metatranscriptome | 187 | N |
| F032582 | Metagenome | 179 | N |
| F039041 | Metagenome | 164 | Y |
| F039481 | Metagenome | 163 | Y |
| F052458 | Metagenome / Metatranscriptome | 142 | N |
| F057944 | Metagenome | 135 | N |
| F060858 | Metagenome | 132 | Y |
| F063687 | Metagenome | 129 | Y |
| F069849 | Metagenome | 123 | Y |
| F078385 | Metagenome | 116 | N |
| F082384 | Metagenome | 113 | N |
| F088502 | Metagenome | 109 | N |
| F093790 | Metagenome | 106 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0196881_10043 | Not Available | 879 | Open in IMG/M |
| Ga0196881_10059 | Not Available | 818 | Open in IMG/M |
| Ga0196881_10067 | Not Available | 798 | Open in IMG/M |
| Ga0196881_10070 | Not Available | 793 | Open in IMG/M |
| Ga0196881_10072 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi | 790 | Open in IMG/M |
| Ga0196881_10080 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | 769 | Open in IMG/M |
| Ga0196881_10082 | Not Available | 766 | Open in IMG/M |
| Ga0196881_10090 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 756 | Open in IMG/M |
| Ga0196881_10107 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 720 | Open in IMG/M |
| Ga0196881_10138 | Not Available | 667 | Open in IMG/M |
| Ga0196881_10153 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 650 | Open in IMG/M |
| Ga0196881_10174 | Not Available | 629 | Open in IMG/M |
| Ga0196881_10187 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 611 | Open in IMG/M |
| Ga0196881_10202 | Not Available | 596 | Open in IMG/M |
| Ga0196881_10204 | Not Available | 594 | Open in IMG/M |
| Ga0196881_10231 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 570 | Open in IMG/M |
| Ga0196881_10242 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 563 | Open in IMG/M |
| Ga0196881_10248 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 560 | Open in IMG/M |
| Ga0196881_10288 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 539 | Open in IMG/M |
| Ga0196881_10303 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 533 | Open in IMG/M |
| Ga0196881_10309 | Not Available | 529 | Open in IMG/M |
| Ga0196881_10318 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli | 526 | Open in IMG/M |
| Ga0196881_10333 | All Organisms → cellular organisms → Bacteria | 519 | Open in IMG/M |
| Ga0196881_10345 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 514 | Open in IMG/M |
| Ga0196881_10347 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 513 | Open in IMG/M |
| Ga0196881_10368 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0196881_10043 | Ga0196881_100431 | F018187 | TIPSGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFREDIRQAEMGAGAGAELLKRIGANRVIKNFRHVPNLFPPRFSYAGGKYTLVQPFTSTAGTKGTVFSVNPSWTTASYEGAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFVHAPEPIFTNQGMTIIFRRCTGALTQIICS |
| Ga0196881_10059 | Ga0196881_100592 | F032582 | EKRCIRYMKSFEIDAVPMYGFRSHNCGISTDYYHNCEKEKAKVKTIVAGLSHFSVWSAIKWMVEAKVTNHRTFLIVEDDVEFIDKNWKAKANDNLEFLPNDWHVIYLGSCCADPIEDHAYIASNLYKLVRGMCTHAYLVNYEGACKLLETNQKVWCPIDIQIAIDSMPRMNFYGILPRLATQENTNLYP |
| Ga0196881_10067 | Ga0196881_100673 | F013635 | MFNLKQGTKFNITFFAKKYKKFITRAGLWNEKSVEKYCKHNIEKLFTFYDLDAERYTTATGDITVVERKDN |
| Ga0196881_10070 | Ga0196881_100701 | F029798 | MANISCADALALINEAYGASCKSPRERVLLELGLLWEAATLGGTADITADNTVIDSSSTMITADMTEFI |
| Ga0196881_10072 | Ga0196881_100721 | F005585 | MLETHYSTGASSMATRGTIYYAFSKSVKHSVFSSETHLTWQLLLSRPNSQEWWKVQSAKIRISISLDMPLSWVDYDFRVQKIGTTLSLTRNHNSNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLYVELPRXL |
| Ga0196881_10080 | Ga0196881_100802 | F001808 | MRYLAIILLLSSCSAQYHLNKAIKKGYTCEETGDTIRITTLDSIPVIINNDIIWEKFITTKDTIIKYKTTYVPRTRYQERLAYKLKVKTTYKDRIVEKAKAKASQPRPRGNLSLLFVGVGIGLLLSYLFKFVKDKYLL |
| Ga0196881_10082 | Ga0196881_100823 | F078385 | VIEFFRDAYAILASGIVISMIVAALFYWYAIHIDGKQTEDFDKKYRELREENNKFKN |
| Ga0196881_10090 | Ga0196881_100902 | F017776 | MEKITLSTQLINAIMQYLGTRPFAEVFQIIDAVQKEVKEQAPTEPEA |
| Ga0196881_10107 | Ga0196881_101071 | F039481 | MPFIIKTVIAFALFTIGFSGNVLLQEPPLGAVDPVTAPYGPYQSFTAQQKDIYLYVAPSTTTTVPEPVYRHGECDWLPAMALRAGWRIEHLGKLKQIGLRETGCCFNRRGGDSVSADCRITGVTEWNHRSDTGLLQINGVNFDLKRNPYAPICLQMGICTQEPLLDAFTNLKAGLVLFNYWQRVAGNGWIPWDICNRTK |
| Ga0196881_10138 | Ga0196881_101381 | F000166 | MPNIPTPEQSQLFAQSVRKWQQVLSLGDWRIEKGSKPAKAAMASVEFNASARLATHRLGDFGAEKITQESLDQTALHELLHIFLHDLMTVAQDPKSSQDEIEMQEHRVINLLEKLLSKDSYGKQ |
| Ga0196881_10138 | Ga0196881_101382 | F069849 | MGSSNETCTDAEFIQLWGQHESSTKIAEHLGVSIRATHLRRRWIEEHYKMTLPAKDFRGVKYDKTKPK |
| Ga0196881_10153 | Ga0196881_101531 | F001834 | VYAFVPESVIPPAVVVVPDSPYLELETINKSTIHAKINFTISVAVAYNSNPASLDNIEQLIMSVLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA |
| Ga0196881_10174 | Ga0196881_101741 | F016268 | MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWSAITLADGSNAGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSVRAQRSWETRYQNIFAKYAIKAVADSSFTQVETI |
| Ga0196881_10187 | Ga0196881_101871 | F008551 | VYESPQAYMSVNVVSNLQVQVAIYGFMATIAKIPNGICRLNIA |
| Ga0196881_10202 | Ga0196881_102022 | F093790 | INFPCGLRYPPEGGLRKPMVIGWMPLKGRETGARFTASTGAVHPFGLSTSSSMRTDVVQPLLVFDTEHLRDMLSRLRKGDIDREWGVHQDPPSVQAEGAYIAEPDLYWRHLDSHVLRPQANRAGRIKHVWVKRNQKWPDHLHDCEIMQLAMVMLWNDLVTSSESIAS |
| Ga0196881_10204 | Ga0196881_102043 | F082384 | MADTAKYKSLSVSITDWKDLGLIAEKTSRTRSKMINKLIKFYKENRGERTNGQGK |
| Ga0196881_10231 | Ga0196881_102312 | F018483 | MMCLAVEAYIYSKKGVVVKINRIAIISDSRQMEMLAYAY |
| Ga0196881_10242 | Ga0196881_102421 | F004639 | METAGKTLMGHLQFLNQDGEWETFPTEEQQANLRANAEVLEELGYQLTCQLCNQFPNSRQIRERYLKEVWVCEKCSTINSAG |
| Ga0196881_10242 | Ga0196881_102422 | F039041 | AELDKVKAKMAQTSTEYIPVEKAHDPWTTAPAQQAQTLESAVEMVKSGLGGTTPDESCIHGARVWKTGTKKTGGEWGHWKCIAQIMGDAQRCDPIWYEIDKATGQWKPQVKR |
| Ga0196881_10248 | Ga0196881_102481 | F015329 | VTNRASINDLTAPSKEAKSFDAWFFAQPKKVQDKMREQGVLPYREMVQSRHVFCIDANHPKWAFNPTADEHRTEVDAFISRDHVGVMLKAFMDALAGTSSFPFRR |
| Ga0196881_10288 | Ga0196881_102881 | F052458 | MAAAMVTMAELRSNLGIGTLYTDATVEECCQSAEDLISAYLWHNDAPVVGSSISNNVATLVLANPGIFVTGQSIVVSNCGATYNGTYTLTGSFPGTTVPA |
| Ga0196881_10288 | Ga0196881_102882 | F013411 | SAFIVVPSSVSIYESPILRLSTNIPTTGEIETSLYGYMAVGVLVAGGVRRFNLT |
| Ga0196881_10303 | Ga0196881_103033 | F003749 | IQLLEEIEKTGDVLTWQDLTTGESRQAVIKQVTFTRMTPPDKRFDGFGGIIEITVRTV |
| Ga0196881_10309 | Ga0196881_103091 | F063687 | MTQSKLRLNTNIRKKIGGLILSHFENEKTTELENYT |
| Ga0196881_10318 | Ga0196881_103182 | F009745 | VLCEAARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDATCYDVTMQSEDEGIDERSWATSFTFDLLAVFPA |
| Ga0196881_10333 | Ga0196881_103332 | F001477 | MSNIYTIHPPKSDLILFYEIEEPNGGNRWGGGEAKSAMQWLFLAPPGSRLLVSAWDSDEEDAHLVGQTIDITEIIQQAREVGL |
| Ga0196881_10345 | Ga0196881_103452 | F088502 | MATDERLNLVDKVLAYVSSPFRLFAMVLMAVLTFSGYFVYTNQELLIGAYKESKKIPSIAEDRVEDAAAHLFKQSGAL |
| Ga0196881_10347 | Ga0196881_103472 | F057944 | MMQEEVEESHPTVRVFPRTIKEAWPKEYVNEDIFTGAYREPQISDFAILCALIAIVGFFVYMFNKYIWV |
| Ga0196881_10368 | Ga0196881_103682 | F007162 | MRDDRGLYGIGSGGGLALGALVALGSETTTHAKASGAAKKAVNIAIQYNVWCGGIANTKTQFAK |
| Ga0196881_10388 | Ga0196881_103881 | F060858 | SEIIKLTENKATGNITIESTSGGVADSPFEISYTPPKTDINVQTGEPVKYPGDFYVIENRPKPDYNSLGKVEFDYDTFDIDTAYSDLERLEKIGTGKVKDVKKIEQRAAGRKKVEDDPYDDIMDRYPDPNPDNYRADGGLASFENGGKAKKKKIAKDELENLEDEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |