Sample 3300020690

Basic Information
IMG/M Taxon OID	3300020690 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053536 \| Ga0214223
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 hypolimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300020690 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0053536 | Ga0214223

Sample Name

Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 hypolimnion

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	59027541
Sequencing Scaffolds	22
Novel Protein Genes	24
Associated Families	23

Dataset Contents

Total Genome Size

59027541

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → hypolimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007127	Metagenome / Metatranscriptome	357	Y
F010394	Metagenome / Metatranscriptome	304	Y
F036523	Metagenome	169	Y
F044899	Metagenome	153	N
F049275	Metagenome	147	N
F050937	Metagenome / Metatranscriptome	144	Y
F051688	Metagenome	143	N
F051902	Metagenome / Metatranscriptome	143	Y
F054608	Metagenome	139	N
F060550	Metagenome	132	N
F061495	Metagenome / Metatranscriptome	131	N
F065359	Metagenome / Metatranscriptome	127	Y
F074376	Metagenome	119	N
F075599	Metagenome	118	N
F076852	Metagenome	117	N
F083675	Metagenome	112	N
F088136	Metagenome	109	N
F088241	Metagenome / Metatranscriptome	109	N
F088285	Metagenome / Metatranscriptome	109	Y
F091305	Metagenome	107	N
F096088	Metagenome / Metatranscriptome	105	Y
F098677	Metagenome	103	N
F100346	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214223_1000697	Not Available	4489	Open in IMG/M
Ga0214223_1000754	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	4210	Open in IMG/M
Ga0214223_1001135	Not Available	3050	Open in IMG/M
Ga0214223_1001242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	2851	Open in IMG/M
Ga0214223_1002246	Not Available	1911	Open in IMG/M
Ga0214223_1004131	Not Available	1343	Open in IMG/M
Ga0214223_1005167	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1194	Open in IMG/M
Ga0214223_1005224	All Organisms → Viruses → Predicted Viral	1185	Open in IMG/M
Ga0214223_1006129	Not Available	1089	Open in IMG/M
Ga0214223_1006323	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1071	Open in IMG/M
Ga0214223_1006591	Not Available	1048	Open in IMG/M
Ga0214223_1007404	Not Available	982	Open in IMG/M
Ga0214223_1008352	Not Available	924	Open in IMG/M
Ga0214223_1010293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	829	Open in IMG/M
Ga0214223_1012880	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	733	Open in IMG/M
Ga0214223_1013913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	705	Open in IMG/M
Ga0214223_1013940	Not Available	704	Open in IMG/M
Ga0214223_1015045	Not Available	676	Open in IMG/M
Ga0214223_1015962	Not Available	656	Open in IMG/M
Ga0214223_1018022	Not Available	613	Open in IMG/M
Ga0214223_1018380	Not Available	607	Open in IMG/M
Ga0214223_1021555	Not Available	556	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214223_1000697	Ga0214223_10006973	F044899	VKKRKVNRHGLVTLTNGVVSMRELGLSIAVPSKCRDDNALTLFNATLSWGQAYALCTLVMCGKDHPVEKAKDMETRMKIMYSAQPYSISEEMLNEILEADPEQRLPYLHGMSKSAQQKLRYALYGQVGNLFNEKVFTKTGVQPSEMVKLHLGLKDLVPERGLMDM
Ga0214223_1000754	Ga0214223_10007542	F054608	MKSYSDIMPELIVLQGHGPKTKAGRKGAAFRHHYRGKECLDIHLLKPAQAWAQMATDHGPGSQQVLGVGGAPDAAADGEWVTYPYREAHPILRWLPSKLAEWIGDNYGAALGIPPKHHADGWTVGELNAILDNNLVPGTHGHLRTFGCIQWESEVFNGRPKARCYPFDLPGHRFRGKNPQVCT
Ga0214223_1000754	Ga0214223_10007544	F074376	LKVCSNLGQVGDKERELKHKLRPRNAFLQAEGLNLPAACPREELHQFLIGLYGEYVIPSSMHKFIQVLRGKELYLGQGDTKRPLVTDQMLRAVWARLRDRLSSLDSPSSMVEVTTAYATHFTDMYVDKHTGKHMTGDRVRILLLTLPFLLRDLIAPEVWP
Ga0214223_1001135	Ga0214223_10011355	F091305	PGLPLFTMQAPASKRRYLNEVFLLVLDDLPTWRSMNTYAVDTEAQLKLLAAAEHPAIPATSSGPAFVAVPKLSKTLVSYIVGLMVTTPYFRGSCDERAKGLAEQHVTSTLASLNTLNGARYKTFLQETIGGWYSLFPEVRAAPRAGRASLDGEEGVDVEEPEEGEEGFIGGEVPVL
Ga0214223_1001242	Ga0214223_10012422	F007127	MKQSEIAATLRKEIGELEVAIHKLEARCERLKKFVLDLEAEVAGPVAPAPLGEESKFRKVIDQVFGEKPKRGKR
Ga0214223_1002246	Ga0214223_10022461	F044899	VVGPKKTTPPSVRTASGKKRVVVDFEGDDEEVSGGGSPQASDSVKKRKINKNGLVTLTNGVVSMRELPLSTAVPTKGRDDDARTLFDAKPSWGHSYALFTLVICGKEHPVEKARDLGTRMKIMYSAAPYSISDASLSEILEAEPEQRQAYLHGMSKAAQQKLRYALYGQVSNLFNEKVFTKNGVQPSETVKLYLGLSGLVPERSLMDM
Ga0214223_1004131	Ga0214223_10041313	F098677	VLTLASGSITGFTKDEEPITETMNVLSPAVRAAPDLMAFMAVFGTDTIFREKVPAGNRSAFKDHIMKLHSAESALGEFKEAWKTWLEDNQDELSDMEADEEVNPAAMDFYGGAAPPTPDT
Ga0214223_1005167	Ga0214223_10051672	F075599	MKGAGHFRVFGTVAIGHELHQGCQRVQCWPFKKMVYYGSNRQDFVFIRPPGIEEGGFRLSPDNVWYCKVLLLFTIQAQTDMGGSTAEFECAFVSVMETMEPRDGDNLSDLRKRGSRVIYEIDPQVLPKYKYLRKTVMFA
Ga0214223_1005224	Ga0214223_10052241	F088241	NSMDPINDIAADTIAIGDTVKVAAADSFNAKVIDLQNYQKLTRGFTIGDTGAGQAGNCTTGTVGSNYQQAAIPNAGAIAADTPSFTFSNINFTITRYEFGDSSYYDALNRALDSGHQFQIYFKNYQTFTGTSTLDKNQSMRITVSSQSLNYLIGTFQAPNRTTITQPINTLISPPQAGETGVYSATFDNQVDSGMPRTFNNALYFVRNGSKLVSSKWSVDQQDFPVKDIYDIYNENLRHWGKFGKPDTIYKGIQSIYHFQETFFTDVLSLEIPDQYNDGIYNVSGVNCKGVPLNIIYNTVGGADTSFYQYTDVSTAANIYGANKKGFSAHNLYLDTGSTYTPVIIANFTSKLVLSKGRNVDYYNXVNNSNFIYNIISSLTNNILYLNYYIYMNSD
Ga0214223_1006129	Ga0214223_10061291	F061495	MSDQSLGVKSSSGTQMKKKIFRQQKVIKQDALDLFIPDPSAKTFVGVYYYMHGRFALYDQECLRRNLLPYIRGAFYDHGFSPVDASKVLKLVIGFSQKRSMQFKGPIDFSGVFADSAADYSGQFMLQDRSMVDQLVDVIFSMQETVARNQTAVPLAPRIISAAFSVESRYRKVVIMYTAYSPDDCLRVTIEGERNKPNTFTFEPTATWIQNRYSNSSSLAAAND
Ga0214223_1006323	Ga0214223_10063231	F083675	VHTAFAPGSCRGQPIVDANDVAKLLLALVFVLDGLGYAERERFNARQARLRDRVQDPFRPIIRAIQGYLRAYHVYRAEALTVREIKQLDTMSRDALEGLQRVFPYGVTYTNGAFRSFFCCEKPHSMTHWADNYATVGRIRTMSTQVTESRYKSSVKTKARKTNNQASFGGSLLQNNMEVEAAIELARHLDETGLHRVRTGFDQTWSGLVGLYHSNRPVWVCTKFSPSSCYVRVVCTKFVLSSAINGPFFWGKRPVDKSANLVQTVVKLMHFTQT
Ga0214223_1006591	Ga0214223_10065912	F076852	MVDVNRLKKDGKTKYVKLLGKGILTLVDHLFWNLPFCSVKQSQAVRKKAGVTEEERSTKWEEIVAEHDLPGAREQLASGWKEYLGKRAGEAARGAGAVRPACLSTVVLDTP
Ga0214223_1007404	Ga0214223_10074041	F088136	MCELLVGCLGKIGQEAIGAAMESVTLDGSTRLGRRRAIALKKRGPFSNFRHCVGQHNL
Ga0214223_1008352	Ga0214223_10083521	F065359	CMHDCNFADEVCVWVMSTLLWTCPQNHGHMDGLNVGSISCYFMLQITNLGVCKCILCLCVMILHTPHMYFRLQPVLRANLCSVGFANVDVFFSKCVLQKWP
Ga0214223_1010293	Ga0214223_10102932	F096088	MIPVKIQCSCGQKYAFDAEPLCGRLAGRVLCPVCGTDGTSAANEVIAFALARDLCEHNEGRQTVMVFAVIGCLGAGLAGVLKAINMTGGFDVLLCLLGAIAAFGLALAVYFWKR
Ga0214223_1012880	Ga0214223_10128802	F100346	VLCQVEFLNAAIDRAPRGSRLHGLHRVSDPSDQIVEVLIKCMEWNIMTRSRSIPESELPEVHLAAVDLLELLRRNLPDKCGEESGWNFEKAHSILHKVREIVMWGNSDNTSCQGAEHAHIELIKSVAHLTNNKDVFLCILRFHTRVGFLQHYERLLSELEGLPDAPGDKYVADSQVLCDRNFNVACETGIRYPTLPAMLNRDTM
Ga0214223_1013913	Ga0214223_10139132	F051902	MQNRVFRSIGRFFAGTGDVVGTPSGDARGLVRVYINDADNVSRGRSF
Ga0214223_1013940	Ga0214223_10139402	F060550	MSAQSLGDKSSSESSASEDDGQERSQLTTKPKRKTVDRFCAWTFRSNIETDLLSAEAVPVDEKTKLLSEHIRNRISHTQPHNVLCVVAFADMTKAITRLPHQSPSISIPVAWFVQCRKCTEYMMRNWLQEAWEPLPGGLAD
Ga0214223_1015045	Ga0214223_10150451	F049275	PLRVLDPEVMGLIARDTINPTVERPIYPFQNPNDPNDTVDLSPRGRPQSPYVCTIVDDGVVVFRGAVPLPDLGNLKPSRLTYTSRLKEDMCVRFYVTLHMSTKKDVLKISEILYEGDSMQTWSHPPCSTEAELKAFRASNKIGVELYLSMTKPMEVQRGPWTPIEVHR
Ga0214223_1015962	Ga0214223_10159621	F051688	MRRLDGTNKAIEGRKAGDPMAPDKVSKFCIAGSATPLYGYFFYLFMDKVMSVALKPILDTALVVNSEKALDELLKARFAM
Ga0214223_1018022	Ga0214223_10180221	F010394	MSETRNLRHPEPGDVDTWRQQFDELDLRMDALRQAFLDGVRSFNMTDEIVERIHARFDDVGVQVHEMHCTYPFGGWPGQEDCRFEPA
Ga0214223_1018380	Ga0214223_10183801	F050937	MNSDYIYNSVATKELNKFSYRPYPLNEEPYNKLKSLNYHKKWDDIYKPYPIKDLKKVYHWSLPFNHGHYNEFEHLNTYSTHNYIPVTHPVNMLFPSVGTMGSVMKRRNL
Ga0214223_1021475	Ga0214223_10214751	F088285	KINDTESTFNEHVQEVMDSPLAQTHAFVEKAYFKPLEEDKIIYSIDINKCRKNILYYGDYDYCVFTVFDKVEEFKGSRIKPGLYYVESDNYMPLRCNGWYYHNMIVYCLQNDIIKLENIKYVIKSSLTLKKDYYNKFIDYCYSNIQDYNKLAINSMIGNFKPNKTKNERWFSSVLTHDSCEAFNS
Ga0214223_1021555	Ga0214223_10215551	F036523	AVVNVPNVVYPASLVLNSSNGSRAIQFSFDGGVTYYAAVTPTYTETSQIVYVLNFPVTTVKFTGAAADTYRIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020690: Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 hypolimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences