| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020683 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0053560 | Ga0214234 |
| Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 08JUL2008 hypolimnion |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 50543708 |
| Sequencing Scaffolds | 33 |
| Novel Protein Genes | 39 |
| Associated Families | 32 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 12 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 5 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → hypolimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000324 | Metagenome / Metatranscriptome | 1299 | Y |
| F004124 | Metagenome / Metatranscriptome | 452 | Y |
| F006255 | Metagenome | 377 | Y |
| F007405 | Metagenome | 351 | Y |
| F008619 | Metagenome | 330 | Y |
| F011148 | Metagenome / Metatranscriptome | 294 | Y |
| F011648 | Metagenome / Metatranscriptome | 288 | Y |
| F015336 | Metagenome / Metatranscriptome | 255 | Y |
| F017785 | Metagenome | 238 | Y |
| F018653 | Metagenome | 234 | Y |
| F021463 | Metagenome | 218 | Y |
| F024029 | Metagenome | 207 | Y |
| F025204 | Metagenome / Metatranscriptome | 202 | Y |
| F031339 | Metagenome | 182 | N |
| F033682 | Metagenome | 176 | Y |
| F034043 | Metagenome / Metatranscriptome | 175 | N |
| F035159 | Metagenome | 172 | Y |
| F040982 | Metagenome / Metatranscriptome | 160 | N |
| F042065 | Metagenome | 159 | N |
| F045569 | Metagenome | 152 | N |
| F048971 | Metagenome | 147 | Y |
| F051645 | Metagenome | 143 | Y |
| F051875 | Metagenome / Metatranscriptome | 143 | N |
| F075594 | Metagenome | 118 | N |
| F080800 | Metagenome | 114 | N |
| F082043 | Metagenome | 113 | Y |
| F086511 | Metagenome | 110 | N |
| F091219 | Metagenome / Metatranscriptome | 107 | N |
| F094846 | Metagenome / Metatranscriptome | 105 | Y |
| F098526 | Metagenome | 103 | N |
| F100440 | Metagenome | 102 | Y |
| F104339 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214234_100130 | Not Available | 23331 | Open in IMG/M |
| Ga0214234_100179 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 17765 | Open in IMG/M |
| Ga0214234_100207 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 15830 | Open in IMG/M |
| Ga0214234_100298 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 12160 | Open in IMG/M |
| Ga0214234_100412 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 9511 | Open in IMG/M |
| Ga0214234_100485 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 8202 | Open in IMG/M |
| Ga0214234_100739 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 5758 | Open in IMG/M |
| Ga0214234_101188 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3859 | Open in IMG/M |
| Ga0214234_101310 | Not Available | 3603 | Open in IMG/M |
| Ga0214234_101713 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2959 | Open in IMG/M |
| Ga0214234_102131 | All Organisms → cellular organisms → Bacteria | 2518 | Open in IMG/M |
| Ga0214234_102230 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2447 | Open in IMG/M |
| Ga0214234_104245 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1594 | Open in IMG/M |
| Ga0214234_104797 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1467 | Open in IMG/M |
| Ga0214234_104983 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1433 | Open in IMG/M |
| Ga0214234_105126 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1406 | Open in IMG/M |
| Ga0214234_105164 | Not Available | 1399 | Open in IMG/M |
| Ga0214234_105165 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → unclassified Methylococcales → Methylococcales bacterium | 1399 | Open in IMG/M |
| Ga0214234_106886 | All Organisms → Viruses → Predicted Viral | 1154 | Open in IMG/M |
| Ga0214234_107104 | Not Available | 1127 | Open in IMG/M |
| Ga0214234_107465 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1090 | Open in IMG/M |
| Ga0214234_107572 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1079 | Open in IMG/M |
| Ga0214234_107940 | Not Available | 1042 | Open in IMG/M |
| Ga0214234_109462 | All Organisms → cellular organisms → Bacteria | 924 | Open in IMG/M |
| Ga0214234_114553 | Not Available | 685 | Open in IMG/M |
| Ga0214234_115899 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 644 | Open in IMG/M |
| Ga0214234_116551 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 628 | Open in IMG/M |
| Ga0214234_117892 | Not Available | 595 | Open in IMG/M |
| Ga0214234_118392 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 582 | Open in IMG/M |
| Ga0214234_120939 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 530 | Open in IMG/M |
| Ga0214234_121001 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 529 | Open in IMG/M |
| Ga0214234_121325 | Not Available | 523 | Open in IMG/M |
| Ga0214234_122012 | Not Available | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214234_100130 | Ga0214234_10013039 | F024029 | MNNDHIYTPSGTDIEERWIKQYGWVRPSEQPEYQAKYKYFQELPLRKLDDKAKIEYETVLRRAKVTRIK |
| Ga0214234_100179 | Ga0214234_10017917 | F035159 | VFQTAFQANAFQNNAFQIVITPTNVKNGGDDAPWTKEELKRLKGIQKKLRLAEAKRIAALKADQEARKQTITDLVNPKPVAKTQQSNIQSNQEVSVDIPSNLANIDRYIANLEQQQQDLQNAVLIRSAKLRLEQELAILEAKRQAELDDEEALLAIIL |
| Ga0214234_100207 | Ga0214234_10020710 | F045569 | VEIDPVKFGVTWQKVENMEYEVAELRKDVKALLELANKGRGGLWAGMMVISAVSAFIGFISHYITGK |
| Ga0214234_100207 | Ga0214234_10020725 | F006255 | MSQLHQLMLEHEEFLEKALDDMEFSNEFMSQSQVDCIRQACGKPSKNVVLKELFNDFGAIFGNPLESFPTIRGAK |
| Ga0214234_100298 | Ga0214234_1002982 | F011148 | MAVFNKNTLTQVSGFDNQIIAGELVYQQKTFWNLALTNSDGTPMDLSTATIDAQIIRRELTNVRDSRYGLAFDINDYTPTPDPISLTITNVDGTHGSFTLVIDDSSWDLVAGQIGLDIANINGTGFSGRIKISFPEEGSTPANDLIIFLLFLVRSDAIVNN |
| Ga0214234_100298 | Ga0214234_1002985 | F008619 | MAGFQDIFEIQQKMTVNNRRLIAQQVSRSGQLRIAQYLTSVPWVFSVTPHNYLYYPTARAIIQQIDNLDRQLPQTITFNSPNLSWFTAMQGTATAATLASTPLPNSQVLTLSSNGTFKAGDFIEIGGYVYKVTADSSGTTVYINRPIIGSPSAGATVTMGNAVSFNLIAEQCPTYTLTPMTNGAFVEWSGPFVFREDITN |
| Ga0214234_100412 | Ga0214234_10041211 | F040982 | MTRKKKRDLKAEGKWWSESQKIEAATTFLALGNATQTAAVLNIPKATFDRWRYSEWFKKIVDDLKAEDNLKLNSRLTKIISKALDVTEDRLEKGNYQYDPKTSELVRVPVSLKDATKVANDMLERRDVIESKPMQEQIEKTVDDRLAKLAEQFKSFAGKSREKDITPKPLTIDV |
| Ga0214234_100485 | Ga0214234_1004853 | F021463 | MSEGLENRVVRLEVKTDNHEDDIRELRETSIDLKTTMHSIEKSLNQIKYLAIGALAVVIAQTIGLDKAIKIMFGV |
| Ga0214234_100739 | Ga0214234_1007394 | F033682 | MFPLPISTYIYIAIALGTAFITHRVDGYYSEKEKLEAVQHVVEVQNKVVNDQAMISQQTQKDKDDLQTRYDDAIAELRGLRNTHTADGKPTSLAISNQGLRLLESDAEVLIGFARQCQTSEIERNDVINKYNALMVTK |
| Ga0214234_101188 | Ga0214234_1011882 | F082043 | MAESFSYKITTESELFTFDFTQVLSSSETISTAICTVIVMNGVDPTPNNIIIGAAVINNQTASQRIANGVDNVTYRLSMTITTSQGNTYVGVGDLNIYTVANV |
| Ga0214234_101310 | Ga0214234_1013102 | F080800 | MRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSVKIHHTKSLSHTRKGSGRKHQQGKA |
| Ga0214234_101713 | Ga0214234_1017132 | F040982 | MTRRKKRDLVASGKWWSDSQKLEAATTYLALGNGAQTAAVLDIPIQTFNRWKYTDWFKKIVEDLKSEDSLKLNARLTKLVSKALDVTEDRLDKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIESKPQQEQIEKTVDDRLAKLAEQFKAFAKPKEKDITPSPLVIDN |
| Ga0214234_102131 | Ga0214234_1021311 | F100440 | MALYPSLTQQDFSTVITLQNDSDGKGDYIAKWEHPT |
| Ga0214234_102230 | Ga0214234_1022304 | F021463 | MPDPLETRVVRLEVTQANHAEDIKELRDTTVDLASTMHSIEKNLSQIKYIAVGALVVIVAQTIGLDKAVRILFGS |
| Ga0214234_102230 | Ga0214234_1022305 | F075594 | MSSVFTVTRDQVIQLALRKLGVLELGSTPDPETIANASLALNLLIKQMATEGLKIWKVNELTVPFVQNKTKYTIGPATLTPTTDLDTAKPLKVIQAWIRNISVTPFIDTPIQLLSKQEYDILGSKFSTGTGNSMYANVRRDSTDLYMYLTPDYNTATTYVLYFVCQQPMEDINTGSQTPDFPTEWMNTLIWNLADQLAIEYSVPQNHRMEIAQRAKMYQDQLCDWDIESTSTFFQADMRMSNVVFGNLNS |
| Ga0214234_104245 | Ga0214234_1042452 | F040982 | MPRRRKKRSLETAGKWWSESQKIEAVTTWLALGNLAQSAAVLDIPIATIKRWRYSDWWKKIEEDLRQEESLGLNARLKKVISKALDVTEDRLSNGNYQFNQKTGELVRVPVNIKDASRVANDMMNRSDIIEEKPIQQQIEKTVDDRLAKLAEDFKRFATAKEVKSEPLTIDMVK |
| Ga0214234_104797 | Ga0214234_1047972 | F031339 | MVEQWIVAATGIGYLVTGILQLQKGAYANAIIWVGYAIGQTGLWLNLK |
| Ga0214234_104983 | Ga0214234_1049834 | F000324 | MTTPITPAHSFVYDGARINIFHANKGEGLPKHEHNFAHATFCMSGSCYIRKENKDIIADKFTQPVNLVANEWHEIEAAEDNTVFCNVFAEGKY |
| Ga0214234_105126 | Ga0214234_1051263 | F021463 | AEALENRVVRLEIKTDNHEDDIKELRKSANDLSKAMASIEKNLAQIKYIAIGALAVVITQSLGLDRAIKLLFGG |
| Ga0214234_105164 | Ga0214234_1051642 | F024029 | MNEHIWTASGTDIEERWKLQGWIRPSETPETQAKFKYYQELPLRKLDDVAKVRYEEVLKRNKVVRIK |
| Ga0214234_105165 | Ga0214234_1051655 | F086511 | MKIIVKIIKENEDGSANAQVDFDKEGLETLVQWGLVALLTKAVDEYRITPEKDGSPTIARAKAVAQKRTKKQK |
| Ga0214234_106537 | Ga0214234_1065372 | F104339 | MTDYADSLLKLNRLTKSFLNAVLKNKKTEAYLIACSITETAQELEDWASHNSVH |
| Ga0214234_106886 | Ga0214234_1068863 | F098526 | MAYSIFTAAETEKFYNSNPDVGVINRTGNTTGHKIVLNNITYSISYDQGSGMWSIYEHPNGTYDRQTRVLQRIHQAYTTYCCGIWQLGSFYCPFDVPHEIEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNMIKGLVRPCQPPKEKRATRAMLQQRLDNILGVIHGNT |
| Ga0214234_107104 | Ga0214234_1071044 | F018653 | MDEFGGACRKFVSKLEATPYLTAGMSLVTLPREPKANPYQVAVVMLQEAPF |
| Ga0214234_107465 | Ga0214234_1074652 | F042065 | MWNNVQEFRDWYMSSGMPLRPPFKNPVFHTDNAMSLCMFREGRFQVELYLTEPYSTTPPHTHPGVESAFVYLAGNIQFYLEGRDNPDVQQWQKSNENGNHFLLGTTVDSSDMTPHWLNIGPEGGAFLSFEYWKNEDPVSVTVNWQGQTVGTEHDKTIESVKHE |
| Ga0214234_107572 | Ga0214234_1075722 | F017785 | MSQVIAPIQNTNNIRYADFVRIVTPSTEYRFSTAPTAITVPAVDALPFDGLGQLIGIGKIQRDIKSTANQTTITLVGIDTALLGVVLNGNLKGAQITMWKGFFNTDGSLITSGGAGGLYQYFYGFINTFNIGEQWMEEVRMYVGTVTVSAANIQMILQNRTVGRFTNDSSWEYFTPGDTSMNRVATISTIYYAFGQNS |
| Ga0214234_107572 | Ga0214234_1075723 | F015336 | MTSSQISACQWETASAGKNLVLGSLPSISSTSYIVKAGDFCQVDRYAYIATADVMRGSGTTVTIPVHRTLLTTLVSPEYAVIGQYGTTVALGGNTYTGCTFPIILQQYPTYNLIPMTNDSFIQWSGPFKAFESVL |
| Ga0214234_107940 | Ga0214234_1079401 | F048971 | MPICHNMSHQLNLQEKIAIFLKMRNDVLKVPLKKIINNMINKCKYINGESLERHNFGNRPIKLTNIPKDINSASFEEDLLNALGSDENEKSIVELLWGDIQLGKRVHACIIMWISVYILKRPVLYIFRNLSIDQKQLQDDITGTEKYNFNVQFIKSFFDTFNVELQECFEDLGLSIYEEYKLPELKDINSNDIINKLSNKDAMNSNDIFCCLMNNVQLAKINMKFSEYIYYNDELVNITTLVDESDLMSPTSSNDRSNDNDKKDSTASEILLAKIYKKVKYALHITGTAHSLLYNITTRLSDQTDIQIKISKVHKMKRSDDYYGLFNN |
| Ga0214234_109462 | Ga0214234_1094621 | F004124 | VWQDGRVKRKSSPSRPPRRHLTAKEKAEVLREHRRSGLSLLAFVRKHGLCYSTLLRWRSRPGQGALVVAPPDLEADPRFVPVKVEGEVLSGDYVLSWAGGRSLKIPPQFETDSLRRLLGVLEALR |
| Ga0214234_114553 | Ga0214234_1145531 | F091219 | MQDMLKSRCKFVTLFGKYAQQKQVGWEVIFSELGFAGSGARKP |
| Ga0214234_115899 | Ga0214234_1158991 | F031339 | MLEKYIVGATGFGYLVTGVLQFQKGATANAVIWIGYAIGQTGLWLNLK |
| Ga0214234_116551 | Ga0214234_1165511 | F082043 | MAESFSYKITTESEVFTFDFSQVLLESETILTATCIAIVMNGVDNNPSAIVIGVPVIFNKTASQRIANGVSEVTYRLEMTITTSLGNTYVGVGDLDIYNADLV |
| Ga0214234_117892 | Ga0214234_1178921 | F051645 | VQIYFVVYSLILDIGENVETGTTDRFYLPLIYVVKKHGSLNASAKALGVSQQRIFHWNKVKAIPDEYKILLHKKYGVPYKSFFTQLE |
| Ga0214234_118392 | Ga0214234_1183921 | F007405 | MVTHIGTAHQFTYDGAQLNIYHANKGEGLPKHDHIYSHATVCHAGSCLISLEGRSYTIDKNSTPLNLPAGEWHEIEALEDGTVFVNVFAEGKY |
| Ga0214234_120939 | Ga0214234_1209392 | F025204 | MNAMDPITTARELATHANDIQHLQADMDKMVDEMKQIKEAIQAIQKTLAEAHGGWRLLLGVGGAAALIGAIMANLFQGFWSK |
| Ga0214234_121001 | Ga0214234_1210011 | F094846 | MAYSNTTGQTTINVDQLISYAFRDAGKTAEEITPEYIQAGKQALFYNLQNLSNLGVNLWLLENQLYGALTQQQQLVLPKTTIDVREANWVYIQNIEASEYLPADNPESP |
| Ga0214234_121325 | Ga0214234_1213252 | F011648 | MSEQDKDFNSFQEHLERIFKDIEDGVFLSADEIGDLRYACGLPANAKQNPVLKSLFEQFSQTFRNAK |
| Ga0214234_121411 | Ga0214234_1214111 | F051875 | KAHARQLLTSYSISQVAAALNISRSFLYNIQKDKISLLDNKNQQTSGTESLNFIPFNFVDPNQQKKNHLINPAPPLKFTCEIIKPNGIKLIIHTSDPTSIINTFLCSN |
| Ga0214234_122012 | Ga0214234_1220121 | F034043 | AFYGDLAGANDWTVFFELPELKTFSIKHFPQDICQTKKQVDAFVISQSRKICLVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQHFGFTSKELKTLVDECSLVSRRSRYYIWLNRFHQSFIPFQMVQIDIAAYKSIAVV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |