NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020593

3300020593: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C Kraft MG (version 2)



Overview

Basic Information
IMG/M Taxon OID3300020593 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127392 | Gp0191741 | Ga0180221
Sample NameEnriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C Kraft MG (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size275411377
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → anthropogenic environment → compost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000116Metagenome2132Y
F001736Metagenome / Metatranscriptome644Y
F001784Metagenome / Metatranscriptome635Y
F005784Metagenome / Metatranscriptome390Y
F011022Metagenome / Metatranscriptome296Y
F011188Metagenome / Metatranscriptome294Y
F021823Metagenome / Metatranscriptome217Y
F031088Metagenome / Metatranscriptome183Y
F065880Metagenome / Metatranscriptome127Y
F072653Metagenome121Y
F076629Metagenome / Metatranscriptome118Y
F081712Metagenome114Y
F090842Metagenome / Metatranscriptome108Y
F094455Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0180221_1001145All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae18897Open in IMG/M
Ga0180221_1005774All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5737Open in IMG/M
Ga0180221_1007705All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4571Open in IMG/M
Ga0180221_1009848All Organisms → cellular organisms → Bacteria3743Open in IMG/M
Ga0180221_1011004All Organisms → cellular organisms → Bacteria3420Open in IMG/M
Ga0180221_1011994All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3182Open in IMG/M
Ga0180221_1015972All Organisms → cellular organisms → Bacteria → Proteobacteria2505Open in IMG/M
Ga0180221_1018679Not Available2191Open in IMG/M
Ga0180221_1021732All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1917Open in IMG/M
Ga0180221_1026296All Organisms → cellular organisms → Bacteria → Proteobacteria1633Open in IMG/M
Ga0180221_1037909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1174Open in IMG/M
Ga0180221_1071372Not Available669Open in IMG/M
Ga0180221_1091091All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0180221_1001145Ga0180221_100114512F072653MNIRMQLVRAGAALAIIGGIAAAATLSPPATDLDCPFAKAVKPQRILLLDPIQRHPIWIDARRDSDDPQLQSTADAKHPLSHGVVTS
Ga0180221_1002373Ga0180221_10023733F000116MSAPVRPIGLPPLSQHLRELASRRDAWLVIARNLIPVVGIWFFGWSAALSVFNYWFDGLSALAAIVAALVPRALRESQPDTVDPVTRLVLGVFVWAFLVGIVGLPYWIVLIPLHDLLLGDELWHRIATSPSLWVAFGMMASLHLRKALAVGYGALPENELKQRVRWDVYLLMLRGMAMFAMAAHGLAFILVPLMALLLSYFEIWPERVLGAVFGDPSKLYLHDPGGAPTRRRTKRK
Ga0180221_1005774Ga0180221_10057746F094455MYNVTEFPIDRLSDRELRIREWEVVMSGGYGSSEHKRLQSEIRRRTVNLYAAAQPYTTH
Ga0180221_1007705Ga0180221_10077055F001736MPDHGDRTPRSTYLREFFERAQRSAEAERDALAVVRAFNARSSSRRPVWFWPKIAAALVAKHPWLVVVCESCNLVVDLDLRVKPRDSEASIRVALREVRCPRCNGHGRPRIVALSKTPTC
Ga0180221_1009848Ga0180221_10098483F065880MKGELPMDREAVQVKLTDGDWQPAVYQDGQFFDLYGLPLDYRKITSWRPAGGSPNGSAAADRRSARL
Ga0180221_1011004Ga0180221_10110043F090842MLKRFFGSSEEPLIPVCPDHHVEMRLRGKMGKPTRFTDQSSSEYTLIYFCPVEGCNNTATRERQRLQIPAPGVAPERPIFARPNDRQ
Ga0180221_1011994Ga0180221_10119943F031088MKLNVLAIALAATAFSAFGANAQTVIEERRDPAVVIEHDRPASSVTVEKREGLIGEKKTITKETTGSAGCDSKTVHREGIGGSTTVKKTNCD
Ga0180221_1015972Ga0180221_10159723F021823MVMLNFVRRLLMHYGIYRRYPLSRLPALKNAWRMAR
Ga0180221_1018679Ga0180221_10186792F076629VIRTLVVGALLALATAGPVSAYSLVSLAPQERETMLSTCGRLGGNDRALCRQVVDDHHVIANYKRSCLEAMTLLLQGSTWAKVKSLPATLTCREGLAQAGYPVKDIMRKLTGAQ
Ga0180221_1021732Ga0180221_10217321F005784AVERRSEPMICQGARLLHIDGRNLQFDGDAVSAEDGCEIHITNSHIIAGGVGVTARAANVHIKNSVIEGKSGSVSASDGANVYTQSSTFRGLSRRLDTASFHDLGGTVWN
Ga0180221_1026296Ga0180221_10262963F001784MGEVIHATFGTEREWKQTRDKTVDGLLTIGTLFGDDEELMRAKADCVYHILRQIVEGIPTVQITTRLPENLSEEQLAILTESIRQAALKGIEVAMTHSVQVLMSSIYDLCTSKLKDARY
Ga0180221_1037909Ga0180221_10379092F011188VDTYNIYMDELPAGEEIDGEEIIEVEFRVVPGSSDDNDPESNAVIAGLDLVDLINLRDALQQEIDNYALTALEASASQIADIEVGGL
Ga0180221_1071372Ga0180221_10713722F011022MPHPMVKEARAALEEAQSQLDAALSAWDASVSELWRTSIALTQAQKRVTHAHELLREALDAAGLEASSSPND
Ga0180221_1091091Ga0180221_10910912F001736TPRSTYLREFVERAKRGAEAERDALAVVRAFNARSSSGRPVWFWPKIAAALVAKHPWLVVVCESCDLVVDLDLRVKPRDPEASIRVALRDVRCPRCNGHGRPRIIALSKIPSR
Ga0180221_1098155Ga0180221_10981551F081712MSAVLLAVFDDYDAADRVRSALVRDGFPTDRVDLTASREPG
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