Metagenome / Metatranscriptome Family F065880

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065880
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	73 residues
Representative Sequence	MKGELPLERQAVQVQINEGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGSANGRTAPNRDLRTESLAQRAN
Number of Associated Samples	95
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.53 %
% of genes near scaffold ends (potentially truncated)	29.13 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.504 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (19.685 % of family members)
Environment Ontology (ENVO)	Unclassified (59.843 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (70.866 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 24.51% Coil/Unstructured: 75.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00873	ACR_tran	5.51
PF16576	HlyD_D23	5.51
PF12700	HlyD_2	3.15
PF00392	GntR	3.15
PF02321	OEP	2.36
PF13091	PLDc_2	1.57
PF13437	HlyD_3	1.57
PF05532	CsbD	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	4.72
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.50 %
Unclassified	root	N/A	31.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.50 %
Unclassified	root	N/A	31.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.50 %
Unclassified	root	N/A	31.50 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.48 %
Unclassified	root	N/A	31.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	34.65 %
Unclassified	root	N/A	31.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	32.28 %
Unclassified	root	N/A	31.50 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.79 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.50 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	26.77 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	3.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.79 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.79 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.50 %
Dokdonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella	23.62 %
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	2.36 %
Luteimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas	1.57 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.79 %
Dyella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	0.79 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.50 %
Dokdonella fugitiva	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	23.62 %
Xanthomonas citri group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group	2.36 %
unclassified Luteimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas	0.79 %
Luteimonas panaciterrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas panaciterrae	0.79 %
unclassified Dyella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → unclassified Dyella	0.79 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.79 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.50 %
Dokdonella fugitiva	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	23.62 %
Xanthomonas citri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri	2.36 %
Dyella sp. OK004	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → unclassified Dyella → Dyella sp. OK004	0.79 %
Luteimonas sp. 9C	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas → Luteimonas sp. 9C	0.79 %
Luteimonas panaciterrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas panaciterrae	0.79 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.79 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459018\|G1P06HT02F8ERF	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	575	Open in IMG/M
3300005328\|Ga0070676_11461765	Not Available	526	Open in IMG/M
3300005329\|Ga0070683_100115160	All Organisms → cellular organisms → Bacteria → Proteobacteria	2538	Open in IMG/M
3300005329\|Ga0070683_100761582	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005331\|Ga0070670_100751696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	879	Open in IMG/M
3300005331\|Ga0070670_101455181	Not Available	629	Open in IMG/M
3300005332\|Ga0066388_102504492	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	938	Open in IMG/M
3300005333\|Ga0070677_10428443	Not Available	703	Open in IMG/M
3300005334\|Ga0068869_100387131	Not Available	1147	Open in IMG/M
3300005335\|Ga0070666_10240157	All Organisms → cellular organisms → Bacteria → Proteobacteria	1281	Open in IMG/M
3300005335\|Ga0070666_10336784	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300005335\|Ga0070666_10739307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri	723	Open in IMG/M
3300005335\|Ga0070666_11259147	Not Available	551	Open in IMG/M
3300005337\|Ga0070682_100477489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	961	Open in IMG/M
3300005337\|Ga0070682_101812003	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300005337\|Ga0070682_102006197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	509	Open in IMG/M
3300005347\|Ga0070668_100019380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	5120	Open in IMG/M
3300005347\|Ga0070668_101901128	Not Available	548	Open in IMG/M
3300005353\|Ga0070669_100925932	Not Available	745	Open in IMG/M
3300005353\|Ga0070669_101014904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas panaciterrae	712	Open in IMG/M
3300005366\|Ga0070659_101762076	Not Available	554	Open in IMG/M
3300005367\|Ga0070667_100060880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3195	Open in IMG/M
3300005367\|Ga0070667_100214008	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300005436\|Ga0070713_102346046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	516	Open in IMG/M
3300005437\|Ga0070710_10022383	All Organisms → cellular organisms → Bacteria → Proteobacteria	3305	Open in IMG/M
3300005439\|Ga0070711_100218689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	1479	Open in IMG/M
3300005455\|Ga0070663_100174265	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300005455\|Ga0070663_100614454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	916	Open in IMG/M
3300005459\|Ga0068867_101353677	Not Available	659	Open in IMG/M
3300005535\|Ga0070684_101799575	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005539\|Ga0068853_100636072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1015	Open in IMG/M
3300005547\|Ga0070693_101334111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	556	Open in IMG/M
3300005548\|Ga0070665_100382710	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300005548\|Ga0070665_100532660	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300005548\|Ga0070665_101174100	Not Available	779	Open in IMG/M
3300005719\|Ga0068861_102627282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas → Luteimonas sp. 9C	508	Open in IMG/M
3300005843\|Ga0068860_102725758	Not Available	513	Open in IMG/M
3300005937\|Ga0081455_10340011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1062	Open in IMG/M
3300005983\|Ga0081540_1004773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10231	Open in IMG/M
3300006237\|Ga0097621_100215157	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300006237\|Ga0097621_101625280	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300006237\|Ga0097621_101695967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	601	Open in IMG/M
3300006642\|Ga0075521_10268188	Not Available	818	Open in IMG/M
3300006755\|Ga0079222_10148640	All Organisms → cellular organisms → Bacteria → Proteobacteria	1328	Open in IMG/M
3300006755\|Ga0079222_11076788	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300006755\|Ga0079222_12232824	Not Available	545	Open in IMG/M
3300006806\|Ga0079220_10217360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1118	Open in IMG/M
3300009174\|Ga0105241_11365262	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300009177\|Ga0105248_11534054	Not Available	754	Open in IMG/M
3300009870\|Ga0131092_10407366	Not Available	1263	Open in IMG/M
3300010359\|Ga0126376_13250740	Not Available	503	Open in IMG/M
3300010362\|Ga0126377_12667869	Not Available	575	Open in IMG/M
3300010396\|Ga0134126_11341101	All Organisms → cellular organisms → Bacteria → Proteobacteria	792	Open in IMG/M
3300012212\|Ga0150985_105514771	Not Available	579	Open in IMG/M
3300012212\|Ga0150985_114888360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	539	Open in IMG/M
3300012212\|Ga0150985_116930456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	616	Open in IMG/M
3300012212\|Ga0150985_118129272	All Organisms → cellular organisms → Bacteria → Proteobacteria	776	Open in IMG/M
3300012469\|Ga0150984_106364450	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300012469\|Ga0150984_111577835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	578	Open in IMG/M
3300012469\|Ga0150984_123226928	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300013069\|Ga0164282_173978	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300013296\|Ga0157374_12194154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	579	Open in IMG/M
3300013297\|Ga0157378_12342575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	586	Open in IMG/M
3300014325\|Ga0163163_12562835	Not Available	568	Open in IMG/M
3300014968\|Ga0157379_11543435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	647	Open in IMG/M
3300020021\|Ga0193726_1028781	All Organisms → cellular organisms → Bacteria → Proteobacteria	2769	Open in IMG/M
3300020027\|Ga0193752_1017593	All Organisms → cellular organisms → Bacteria → Proteobacteria	3490	Open in IMG/M
3300020034\|Ga0193753_10037538	All Organisms → cellular organisms → Bacteria → Proteobacteria	2681	Open in IMG/M
3300020034\|Ga0193753_10234122	Not Available	824	Open in IMG/M
3300020060\|Ga0193717_1001445	All Organisms → cellular organisms → Bacteria → Proteobacteria	14596	Open in IMG/M
3300020060\|Ga0193717_1016406	All Organisms → cellular organisms → Bacteria	3305	Open in IMG/M
3300020061\|Ga0193716_1065264	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300020593\|Ga0180221_1009848	All Organisms → cellular organisms → Bacteria	3743	Open in IMG/M
3300021475\|Ga0210392_10529132	All Organisms → cellular organisms → Bacteria → Proteobacteria	870	Open in IMG/M
3300021475\|Ga0210392_10829407	Not Available	691	Open in IMG/M
3300022467\|Ga0224712_10512914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	580	Open in IMG/M
3300022878\|Ga0247761_1060876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	726	Open in IMG/M
3300023079\|Ga0247758_1201646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	553	Open in IMG/M
3300023267\|Ga0247771_1233389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	542	Open in IMG/M
3300024055\|Ga0247794_10349766	Not Available	506	Open in IMG/M
3300025321\|Ga0207656_10049080	All Organisms → cellular organisms → Bacteria → Proteobacteria	1819	Open in IMG/M
3300025321\|Ga0207656_10374363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	713	Open in IMG/M
3300025903\|Ga0207680_10104241	All Organisms → cellular organisms → Bacteria → Proteobacteria	1828	Open in IMG/M
3300025904\|Ga0207647_10588327	Not Available	615	Open in IMG/M
3300025907\|Ga0207645_10496338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri	826	Open in IMG/M
3300025911\|Ga0207654_10757710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	700	Open in IMG/M
3300025914\|Ga0207671_10061588	All Organisms → cellular organisms → Bacteria → Proteobacteria	2784	Open in IMG/M
3300025914\|Ga0207671_10686656	Not Available	814	Open in IMG/M
3300025916\|Ga0207663_11442282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	554	Open in IMG/M
3300025917\|Ga0207660_10852263	Not Available	744	Open in IMG/M
3300025919\|Ga0207657_11159649	Not Available	589	Open in IMG/M
3300025920\|Ga0207649_10752527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	758	Open in IMG/M
3300025923\|Ga0207681_10795617	Not Available	790	Open in IMG/M
3300025925\|Ga0207650_11308444	Not Available	617	Open in IMG/M
3300025925\|Ga0207650_11522550	Not Available	568	Open in IMG/M
3300025932\|Ga0207690_11328841	Not Available	601	Open in IMG/M
3300025934\|Ga0207686_10516188	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300025939\|Ga0207665_11576499	Not Available	521	Open in IMG/M
3300025942\|Ga0207689_10495879	All Organisms → cellular organisms → Bacteria → Proteobacteria	1023	Open in IMG/M
3300025945\|Ga0207679_10084405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2437	Open in IMG/M
3300025972\|Ga0207668_11851818	Not Available	544	Open in IMG/M
3300025986\|Ga0207658_10007412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	7482	Open in IMG/M
3300026035\|Ga0207703_12056145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	547	Open in IMG/M
3300026041\|Ga0207639_10618269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1000	Open in IMG/M
3300026067\|Ga0207678_11152260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	687	Open in IMG/M
3300026078\|Ga0207702_10101384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → unclassified Dyella → Dyella sp. OK004	2542	Open in IMG/M
3300026118\|Ga0207675_101701934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas citri group → Xanthomonas citri	651	Open in IMG/M
3300026142\|Ga0207698_10595715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	1089	Open in IMG/M
3300027266\|Ga0209215_1046849	Not Available	595	Open in IMG/M
3300028379\|Ga0268266_10084255	All Organisms → cellular organisms → Bacteria → Proteobacteria	2776	Open in IMG/M
3300028379\|Ga0268266_10627346	Not Available	1033	Open in IMG/M
3300028379\|Ga0268266_11909004	Not Available	568	Open in IMG/M
3300028379\|Ga0268266_11960937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	559	Open in IMG/M
3300028380\|Ga0268265_10039654	All Organisms → cellular organisms → Bacteria → Proteobacteria	3473	Open in IMG/M
3300028381\|Ga0268264_11109029	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300028381\|Ga0268264_11745478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	633	Open in IMG/M
3300028786\|Ga0307517_10604177	Not Available	540	Open in IMG/M
3300030959\|Ga0102747_11312675	Not Available	575	Open in IMG/M
3300031039\|Ga0102760_10038657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	609	Open in IMG/M
3300031058\|Ga0308189_10364096	Not Available	586	Open in IMG/M
3300031231\|Ga0170824_115694969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	511	Open in IMG/M
3300031616\|Ga0307508_10412627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	942	Open in IMG/M
3300031720\|Ga0307469_10832624	All Organisms → cellular organisms → Bacteria → Proteobacteria	849	Open in IMG/M
3300031730\|Ga0307516_10410347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	1013	Open in IMG/M
3300032782\|Ga0335082_10343016	Not Available	1362	Open in IMG/M
3300032828\|Ga0335080_10377559	Not Available	1525	Open in IMG/M
3300032954\|Ga0335083_10675084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	842	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.42%
Environmental	Environmental	37.01%
Engineered	Engineered	1.57%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.42%
Terrestrial	Environmental → Terrestrial	37.01%
Solid Waste	Engineered → Solid Waste	0.79%
Wastewater	Engineered → Wastewater	0.79%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	37.80%
Soil	Environmental → Terrestrial → Soil	34.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.11%
Roots	Host-Associated → Plants → Roots	5.51%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.36%
Grass	Engineered → Solid Waste → Grass	0.79%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.79%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	30.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.47%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.96%
Loam	Environmental → Terrestrial → Soil → Loam	11.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.15%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.36%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.36%
Unclassified	Host-Associated → Plants → Roots → Unclassified	2.36%
Composting	Engineered → Solid Waste → Grass → Composting	0.79%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	30.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.15%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.36%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.36%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.57%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.79%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	19.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.09%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.30%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.15%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.15%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.15%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.36%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.36%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.36%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.57%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.79%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013069	Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C Kraft MG (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020593	Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C Kraft MG (version 2)	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022878	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L111-311C-4	Environmental	Open in IMG/M
3300023079	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L156-409C-4	Environmental	Open in IMG/M
3300023267	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L197-509C-6	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300030959	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 2A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031039	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2MG_02480380	2170459018	Switchgrass, Maize And Mischanthus Litter	MKGELPLERQAVQVQINDGDWQAATYQDGQFVDLYGLPLDHRKITGWRPAGGTANGRTAPNRSIRAESPAQRAN
Ga0070676_114617651	3300005328	Miscanthus Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGEMGSEKRAVVHPISPRAH*
Ga0070683_1001151602	3300005329	Corn Rhizosphere	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTLPNRDLRTASISPRAN*
Ga0070683_1007615822	3300005329	Corn Rhizosphere	MKGELPLERQAVQVQINNGEWQPATYQDGQFVDLYGLPLDHRKITSWRPAGGSTNGRAAPNRTLRPESPTQRAN*
Ga0070670_1007516961	3300005331	Switchgrass Rhizosphere	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTSPNRDLRTASISPRAN*
Ga0070670_1014551812	3300005331	Switchgrass Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGGMGSEKRAVVHPISPRAH*
Ga0066388_1025044922	3300005332	Tropical Forest Soil	MKGELPMERQAVQVQINNGDWQAAVYQDGQFVDLYGLPLDHRKITSWRPAGGAANGSAASNRTLRAQQSDAHRPN*
Ga0070677_104284431	3300005333	Miscanthus Rhizosphere	MKGELPMDRQAVQVKINDGDWQPAMYQDGQFVDLYGLPLDHTKISTWRPAGGSASSAASGSREFHAPRVSQRAN*
Ga0068869_1003871312	3300005334	Miscanthus Rhizosphere	MKGELPMDRQAVQVKINDGDWQPAMYQDGQFVDLYGLPLDHTKISTWRPAGGSASSAVSGSREFHAPRVSQRAN*
Ga0070666_102401572	3300005335	Switchgrass Rhizosphere	MKGELPMDRQAVQVQLNDGDWQTATYQDGQFVDLYGLPLDHHKITRWRPAGGAANGSGVATNRELRTESRVPH*
Ga0070666_103367841	3300005335	Switchgrass Rhizosphere	MKGELPMERQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRELRPESRVA
Ga0070666_107393072	3300005335	Switchgrass Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGGMGAEKRAVVHPISPRAH*
Ga0070666_112591471	3300005335	Switchgrass Rhizosphere	MKGELPMDRQPVQVKVDDGDWQAAVYQDGQFVDLYGLPLNHRKITSWRPAGGAANGSAAERRVMGPQAHSPN*
Ga0070682_1004774892	3300005337	Corn Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTASGRTAPNRSFSAESPASRAN*
Ga0070682_1018120031	3300005337	Corn Rhizosphere	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGSTNGRAAPNRTLRPESPTQRAN*
Ga0070682_1020061971	3300005337	Corn Rhizosphere	MKGELPMDRQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRDIRPEPRATH*
Ga0070668_1000193806	3300005347	Switchgrass Rhizosphere	MKGELPMDRQPVQVKVDDGDWQAAVYQDGQFVDLYGLPLNHRKITSWRPAGGAANGSAAERRVMRPQAHSPN*
Ga0070668_1019011281	3300005347	Switchgrass Rhizosphere	MKGELPMERQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRELRTESRVAH*
Ga0070669_1009259321	3300005353	Switchgrass Rhizosphere	MKGELPMERQPVQVKLGEGEWQAAVYQDGQFVDTYGLPLDHRKITSWRPAGGSANGSAASEQRSLRGGHHGTARTLQ*
Ga0070669_1010149042	3300005353	Switchgrass Rhizosphere	MKGELPMERQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRELRPESRVAH*
Ga0070659_1017620761	3300005366	Corn Rhizosphere	MNGELPVDRQAVQVKVDDGDWQPAVYQDGQFVDLYGLPLDHRKIKSWRPAGGAANGGGASEPRSVRGPQHHARPS*
Ga0070667_1000608802	3300005367	Switchgrass Rhizosphere	MNGELPVDRQAVQVKVDDGDWQPAVYQDGQFVDLYGLPLDHRKIKSWRPAGGAANGSGASEPRSVRGPQHHARPS*
Ga0070667_1002140082	3300005367	Switchgrass Rhizosphere	MKGELPMERQAVQVQLNNGDWQAATYQDGQFVDLYWLPLDHHKITSWRPAGGAANGSGVATNRELRPESRVAH*
Ga0070713_1023460461	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTGWRPAGGTANGRTAP
Ga0070710_100223832	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKGELPLERQAVQVQINDGDWQAATYQDGQFVDLYGLPLDHRKITGWRPAGGTANGRTAPNRSIRAESPAQRAN*
Ga0070711_1002186891	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKGELPLERQAVQVQINDGDWQAATYQDGQFVDLYGLPLDHRKITGWRPAGGSATGTGAANNRNLHTEQRISH*
Ga0070663_1001742652	3300005455	Corn Rhizosphere	MKGELPMDRQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRDIRPEPR
Ga0070663_1006144542	3300005455	Corn Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTASGRTAPNRSFSAELPASRAN*
Ga0068867_1013536772	3300005459	Miscanthus Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGGMGSEKRAIVHPISPRAH*
Ga0070684_1017995752	3300005535	Corn Rhizosphere	ERQAVQVQINNGEWQPATYQDGQFVDLYGLPLDHRKITSWRPAGGSTNGRAAPNRTLRPESPTQRAN*
Ga0068853_1006360722	3300005539	Corn Rhizosphere	MKGELPLERQAVQVQISNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTANGRPAPDRNVRAESPLPRAH*
Ga0070693_1013341111	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHQKVTSWRPAGGSANGRTAPNRNLRTESPSPRAH*
Ga0070665_1003827102	3300005548	Switchgrass Rhizosphere	MKGELPMDRQTVQVQLNNGDWQAATYQDGQFVDLYGLPLDHQKITSWRPAGGAANGSGVATNRDIRPEPRATH*
Ga0070665_1005326602	3300005548	Switchgrass Rhizosphere	MKGELPMDRQAVQVKIDDGDWQAAVYQDGQFVDLYGLPLDSHKISSWRPAGGSADGRAAANRPLREQRPAQRSN*
Ga0070665_1011741001	3300005548	Switchgrass Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYHKITSWRAAGGGVNGGMAPEKRAVVHPISPRAH*
Ga0068861_1026272821	3300005719	Switchgrass Rhizosphere	MKGELPMERQAVQVKLGEGDWQAAIYQDGQFVDTYGLPLDYRKITSWRAAGGAVNGATATDKRVVANSPAQRVH*
Ga0068860_1027257582	3300005843	Switchgrass Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGGMGSEKRAVV
Ga0081455_103400111	3300005937	Tabebuia Heterophylla Rhizosphere	MKGELPMDRQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITRWRPAGGAANGSGVATNRELRTEPRAAH*
Ga0081540_10047735	3300005983	Tabebuia Heterophylla Rhizosphere	MKGELPMERQAVQVKINNGDWQAAVYQDGQFVDLYGLPLDHRKVTSWRPAGGAPNGSAANNRTVRTPQHDVHRPN*
Ga0097621_1002151571	3300006237	Miscanthus Rhizosphere	MKGELPMDRQAVQVKINDGDWQPAMYQDGQFVDLYGLPLDHTKISSWRPAGGSASSAVSGSREFHAPRVSQRAN*
Ga0097621_1016252802	3300006237	Miscanthus Rhizosphere	TMKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTASGRTAPNRSFSAESPASRAN*
Ga0097621_1016959671	3300006237	Miscanthus Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTASGRTAP
Ga0075521_102681882	3300006642	Arctic Peat Soil	MKGELPLERQAVQVKLNEGDWQSAVYQDGQFVDLYGLPLDHQKVTSWRPAGSSADGRATASRDLRSEHRPA*
Ga0079222_101486402	3300006755	Agricultural Soil	MKGELPLERQAVQVKLNDGDWQPAVYQDGQFVDLYGLPLDHLKITSWRPAGGNADGRVTPNRNLRNEHRPV*
Ga0079222_110767882	3300006755	Agricultural Soil	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTSPNRDLRTASVSPRAN*
Ga0079222_122328242	3300006755	Agricultural Soil	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHHKVASWRPAGGGANGRASQNRNLRA
Ga0079220_102173601	3300006806	Agricultural Soil	MKGELPLERQAVQVKLNDGDWQPAVYQDGQFVDLYGLPLDHLKITSWRPAGGNADGRLTPNRNLRNEHRPV*
Ga0105241_113652621	3300009174	Corn Rhizosphere	LKRFSTRSTTMKGELPLERQAVQVQISNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTANGRPAPDRNVRAESPLPRAH*
Ga0105248_115340542	3300009177	Switchgrass Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGGMGSEKRAVHPISPRAH*
Ga0131092_104073662	3300009870	Activated Sludge	MKGELPLERQAVQVQLNNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGSANGSPAHHRNLRAESPGPRAN*
Ga0126376_132507402	3300010359	Tropical Forest Soil	MKGELPMERQAVQVQINNGDWQAAVYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSAASNRNLRAPQRDAHRPN*
Ga0126377_126678691	3300010362	Tropical Forest Soil	MQSMRSNIMKGELPLERQAVQVQLNNGDWQPATYQDGQFVDLYGLPLDHRKITSWRPAGGAASGSGAAGNRHLRADNRGAAR*
Ga0134126_113411011	3300010396	Terrestrial Soil	KGELPLERQTVQVKLNDGDWQPAVYQDGQFVDLYGLPLDHLKITSWRPAGGNADGRVTPNRNLRNEHRPV*
Ga0150985_1055147711	3300012212	Avena Fatua Rhizosphere	MDRQAVQVKINDGDWQAAVYQDGQFVDLYGLPLDHRKISSWRPAGGTANGSAAGDRTLRAQTSQRPN*
Ga0150985_1148883601	3300012212	Avena Fatua Rhizosphere	CALPISRCKEQENSMKGELPMDRQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGAANGSGVTTNRDLRTEPRATH*
Ga0150985_1169304561	3300012212	Avena Fatua Rhizosphere	QEISMKGELPMDRQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKVTSWRPAGGAANGSGVATNRELRTEPRATH*
Ga0150985_1181292722	3300012212	Avena Fatua Rhizosphere	MDRQAVQVKINDGDWQAAVYQDGQFVDLYGLPLDHRKISSWRPAGGTANCSAAGDRTLRAQTSQRPN*
Ga0150984_1063644502	3300012469	Avena Fatua Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRAAPNRSLRAEPSSPRTH*
Ga0150984_1115778351	3300012469	Avena Fatua Rhizosphere	GDAYGDSRTSSRTRCKEQENSMKGELPMDRQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGAANGSGVTTNRDLRTEPRATH*
Ga0150984_1232269282	3300012469	Avena Fatua Rhizosphere	AVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRAAPNRSLRAEPSSPRPH*
Ga0164282_1739782	3300013069	Soil	AIRSTPMKGELPMDREAVQVKLTDGDWQPAVYQDGQFFDLYGLPLDYRKITSWRPAGGSPNGSAAADRRSARL*
Ga0157374_121941541	3300013296	Miscanthus Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKITGWRPAGGTASGRTAPNRSFS
Ga0157378_123425751	3300013297	Miscanthus Rhizosphere	MKGELPLERQAVQVQINDGDWQAATYQDGQFVDLYGLPLDHRKITGWRPAGGTPNGRTAPNRSIRAESPAQRAN*
Ga0163163_125628351	3300014325	Switchgrass Rhizosphere	MKGELPMERQAVQVKVDNGDWQAAVYQDGQFVDLYGLPLDHRKITSWRPAGGAVNGSAAERRAVRPTQPHSPN*
Ga0157379_115434352	3300014968	Switchgrass Rhizosphere	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTSPNRDLRTASISP
Ga0193726_10287812	3300020021	Soil	MKGELPMDRQAVQVKISDGDWQPAVYQDGQFVDLYGLPLDASKISSWRPAGGSADGRVAQNRNLRGDARTGQRSN
Ga0193752_10175933	3300020027	Soil	MKGELPMDRQAVQVKISDGDWQAAVYQDGQFVDLYGLPLDHGKISSWRPAGGSADGRAAQNRNLRGDVRTAQRSN
Ga0193753_100375382	3300020034	Soil	MKGEIPMDRQAVQVKISDGDWQPAVYQDGQFVDLYGLPLDASKISSWRPAGGSADGRVAQNRNLRGDARTGQRSN
Ga0193753_102341221	3300020034	Soil	MKGELPMDRQAVQVKISDGDWQPAVYQDGQFVDLYGLPLDASKISSWRPAGGSADGRAAQNRNLRGDASTAQ
Ga0193717_10014454	3300020060	Soil	MKGELPMERQAVQVKLGEGDWQAAVYQDGQFVDTYGLPLDHHKITSWRPAGGSAAGSAATEPRALRSGTRPASGSLH
Ga0193717_10164063	3300020060	Soil	MKGELPMERQAVQVKLGEGDWQAAIYQDGQFVDTYGLPLDHLKITSWRPAGGSATGSAATEPRSLRSGTRPATGSLH
Ga0193716_10652642	3300020061	Soil	MKGELPMERQAVQVKLGEGDWQAAIYQDGQFVDTYGLPLDYRKITSWRAAGGAVNGAAATDKRIVAGSSAQRVH
Ga0180221_10098483	3300020593	Compost	MKGELPMDREAVQVKLTDGDWQPAVYQDGQFFDLYGLPLDYRKITSWRPAGGSPNGSAAADRRSARL
Ga0210392_105291321	3300021475	Soil	VQVQIDNGDWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGTANGRTAPNRNIRAESSAQRAN
Ga0210392_108294072	3300021475	Soil	MKGELPMDRQAVQVKISDGDWQAAVYQDGQFVDLYGLPLDHGKISSWRPAGGSADGRAAQNRNLRDNARPAQRSN
Ga0224712_105129141	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MKGELPLERQAVQVQINNGEWQPATYQDGQFVDLYGLPLDHRKITSWRPAGGSTNGRAAPNRTLRPESPTQRAN
Ga0247761_10608761	3300022878	Plant Litter	MKGELPMDRQTVQVQLNNGDWQAATYQDGQFVDLYGLPLDHQKITSWRPAGGAANGSGVARNRDVRAEPRTAH
Ga0247758_12016461	3300023079	Plant Litter	MKGELPMDRQTVQVQLNNGDWQAATYQDGQFVDLYGLPLDHQKITSWRPAGGTANGSGMASNRTLRTDQRVAH
Ga0247771_12333892	3300023267	Plant Litter	MKGELPMDRQTVQVQLNNGDWQAATYQDGQFVDLYGLPLDHQKITSWRPAGGAANGSGVARNRDVRAEPRTA
Ga0247794_103497662	3300024055	Soil	QAVQVQINNGEWQPATYQDGQFVDLYGLPLDHRKITSWRPAGGSTNGRAAPNRTLRPESPTQRAN
Ga0207656_100490802	3300025321	Corn Rhizosphere	MKGELPMDRQPVQVKVDDGDWQAAVYQDGQFVDLYGLPLNHRKITSWRPAGGAANGSAAERRVMRPQAHSPN
Ga0207656_103743631	3300025321	Corn Rhizosphere	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTSPNRDLRTASISPR
Ga0207680_101042413	3300025903	Switchgrass Rhizosphere	MKGELPMDRQAVQVQLNDGDWQTATYQDGQFVDLYGLPLDHHKITRWRPAGGAANGSGVATNRELRTESRVPH
Ga0207647_105883271	3300025904	Corn Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGGMGAEKRAVVHPISPRAH
Ga0207645_104963381	3300025907	Miscanthus Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGGMGSEKRAVVHPISPRAH
Ga0207654_107577102	3300025911	Corn Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTASGRTAPNRSFSAESPASRAN
Ga0207671_100615883	3300025914	Corn Rhizosphere	MKGELPMDRQSVQVKVDDGDWQAAVYQDGQFVDLYGLPLNHRKITSWRPAGGAANGSAAERRVMRPQAHSPN
Ga0207671_106866562	3300025914	Corn Rhizosphere	MKGELPLERQAVQVKLNDGDWQPAVYQDGQFVDLYGLPLDHLKITSWRPAGGNADGRVTPNRNLRNEHRPV
Ga0207663_114422822	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHQKVTSWRPAGGSANGRTAPNRNLRTESPSPRAH
Ga0207660_108522631	3300025917	Corn Rhizosphere	MKGELPLERQAVQVQINNGEWQPATYQDGQFVDLYGLPLDHRKITSWRPAGGSTNGRAAPNRTLRPESPTQRANCAT
Ga0207657_111596491	3300025919	Corn Rhizosphere	MKGELPMERQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRELRTESRVAH
Ga0207649_107525272	3300025920	Corn Rhizosphere	MKGELPMDRQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRDIRPEPRATH
Ga0207681_107956171	3300025923	Switchgrass Rhizosphere	MKGELPMERQPVQVKLGEGEWQAAVYQDGQFVDTYGLPLDHRKITSWRAAGGGVNGGMGSEKRAVVHPISPRAH
Ga0207650_113084442	3300025925	Switchgrass Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYRKITSWRAAGGGVNGGMGSEKRAVVHPI
Ga0207650_115225501	3300025925	Switchgrass Rhizosphere	MKGELPMERQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRELRPESRVAH
Ga0207690_113288411	3300025932	Corn Rhizosphere	MNGELPVDRQAVQVKVDDGDWQPAVYQDGQFVDLYGLPLDHRKIKSWRPAGGAANGGGASEPRSVRGPQHHARPS
Ga0207686_105161882	3300025934	Miscanthus Rhizosphere	LPMDRQAVQVKINDGDWQPAMYQDGQFVDLYGLPLDHTKISTWRPAGGSASSAVSGSREFHAPRVSQRAN
Ga0207665_115764991	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKGELPLERQAVQVKLNDGDWQPAVYQDGQFVDLYGLPLDHLKVTSWRPAGGNADGRAMPNRNLRNEHRLV
Ga0207689_104958792	3300025942	Miscanthus Rhizosphere	MKGELPMDRQAVQVKINDGDWQPAMYQDGQFVDLYGLPLDHTKISTWRPAGGSASSAASGSREFHAPRVSQRAN
Ga0207679_100844053	3300025945	Corn Rhizosphere	KGELPLERQAVQVQINNGEWQPATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTSPNRDLRTASISPRAN
Ga0207668_118518181	3300025972	Switchgrass Rhizosphere	MKGELPMERQAVQVKLGEGDWQAAIYQDGQFVDTYGLPLDYRKITSWRAAGGAVNGAAATDKRVVANSPAQRVH
Ga0207658_100074126	3300025986	Switchgrass Rhizosphere	MNGELPVDRQAVQVKVDDGDWQPAVYQDGQFVDLYGLPLDHRKIKSWRPAGGAANGSGASEPRSVRGPQHHARPS
Ga0207703_120561451	3300026035	Switchgrass Rhizosphere	VQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTSPNRDLRTASISPRA
Ga0207639_106182692	3300026041	Corn Rhizosphere	MKGELPLERQAVQVQISNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTANGRPAPDRNVRAESPLPRAH
Ga0207678_111522603	3300026067	Corn Rhizosphere	MKGELPLERQAVQVQINNGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGTANGRPAPDRNVRAESPLPRAH
Ga0207702_101013843	3300026078	Corn Rhizosphere	MKGELPLERQAVQVKLNDGDWQPAVYQDGQFVDLYGLPLDHLKITSWRPAGGNADGRAMPNRNLRNEHRPV
Ga0207675_1017019341	3300026118	Switchgrass Rhizosphere	MKGELPMERQAVQVKLGEGDWQAAIYQDGQFVDTYGLPLDYRKITSWRAAGGAVNGATATDKRVVANSPAQRVH
Ga0207698_105957151	3300026142	Corn Rhizosphere	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTSPNRD
Ga0209215_10468492	3300027266	Forest Soil	MKGELPMDRQAVQVKINDGDWQAAVYQDGQFVDLYGLPLDHKKISSWRPAGGSVNGGGAGNRDLRGVQRPLQRAN
Ga0268266_100842552	3300028379	Switchgrass Rhizosphere	MKGELPMDRQPVQVKVDDGDWQAAVYQDGQFVDLYGLPLNHRKITSWRPAGGAANGSAAERRVMGPQAHSPN
Ga0268266_106273462	3300028379	Switchgrass Rhizosphere	MKGELPMDRQAVQVKIDDGDWQAAVYQDGQFVDLYGLPLDSHKISSWRPAGGSADGRAAANRPLREQRPAQRSN
Ga0268266_119090041	3300028379	Switchgrass Rhizosphere	MKGELPMDRQAVQVKLGEGDWQPATYQDGQFVDTYGLPLDYHKITSWRAAGGGVNGGMAPEKRAVVHPISPRAH
Ga0268266_119609372	3300028379	Switchgrass Rhizosphere	MDRQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHHKITSWRPAGGAANGSGVATNRDIRPEPRATH
Ga0268265_100396543	3300028380	Switchgrass Rhizosphere	MKGELPMERQPVQVKLGEGEWQAAVYQDGQFVDTYGLPLDHRKITSWRPAGGSANGSAASEQRSLRGGHHGTARTLQ
Ga0268264_111090291	3300028381	Switchgrass Rhizosphere	RNPLKEYDMNGELPVDRQAVQVKVDDGDWQPAVYQDGQFVDLYGLPLDHRKIKSWRPAGGAANGSGASEPRSVRGPQHHARPS
Ga0268264_117454782	3300028381	Switchgrass Rhizosphere	MKGELPMERQAVQVQLNDGDWQTATYQDGQFVDLYGLPLDHHKITRWRPAGGAANGSGVATNRELRTESRVPH
Ga0307517_106041772	3300028786	Ectomycorrhiza	MKGELPMDRQAVQVKISDGDWQAAVYQDGQFVDLYGLPLDHGKISSWRPAGGSADGRAAQNRNLRGDARTT
Ga0102747_113126751	3300030959	Soil	MKGELPMDRQTVQVQLNNGDWQAATYQDGQFVDLYGLPLDHQKITSWRPSGGAANGSGVAANRTVSPERRVAH
Ga0102760_100386572	3300031039	Soil	RQAVQVQLNNGDWQAATYQDGQFVDLYGLPLDHRNVTSWRPAGGAANGSGVATNRDLRTEPRATH
Ga0308189_103640961	3300031058	Soil	SRTMKGELPMDRQSVQVKINDGDWQPAVYQDGQFVDLYGLPLDHGKISGWRPAGGSADGRPAQNRNLRGDVRTTAQRSN
Ga0170824_1156949691	3300031231	Forest Soil	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRAAPNRNIRPESTAQRAN
Ga0307508_104126272	3300031616	Ectomycorrhiza	MKGELPLERQAVQVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSVNGRTAPNRNIRPESTAQRAN
Ga0307469_108326242	3300031720	Hardwood Forest Soil	MKGELPLERQAVQVKLNDGDWQPAVYQDGQFVDLYGLPLDHRKVTSWRPAGGNADGRATPDRNLRNEHRPV
Ga0307516_104103471	3300031730	Ectomycorrhiza	QVQIDNGEWQAATYQDGQFVDLYGLPLDHRKVTSWRPAGGSANGRTAPNRNIRPESTAQRAN
Ga0335082_103430162	3300032782	Soil	MKGELPMERQAVQVKINDGEWQPAIYQDGQFVDLYGLPLDHRKITGWRPAGGAAGGQPATNRDLRAQRSI
Ga0335080_103775594	3300032828	Soil	MKGELPMERQAVQVKINDGEWQPAIYQDGQFVDLYGLPLDHRKVTSWRPAGSSTGGHPATNRDLRGAQRSL
Ga0335083_106750842	3300032954	Soil	MKGELPLERQAVQVQINEGEWQAATYQDGQFVDLYGLPLDHRKITSWRPAGGSANGRTAPNRDLRTESLAQRAN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065880

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences