NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020308

3300020308: Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556085-ERR599046)



Overview

Basic Information
IMG/M Taxon OID3300020308 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0117271 | Ga0211693
Sample NameMarine microbial communities from Tara Oceans - TARA_B100000530 (ERX556085-ERR599046)
Sequencing StatusPermanent Draft
Sequencing CenterCEA Genoscope
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size113369491
Sequencing Scaffolds43
Novel Protein Genes48
Associated Families44

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available20
All Organisms → Viruses → Predicted Viral7
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Chaetocerotales → Attheyaceae → Attheya → Attheya septentrionalis1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2 → Prochlorococcus phage P-SSM21
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationTARA_078
CoordinatesLat. (o)-30.1495Long. (o)-43.2486Alt. (m)N/ADepth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002240Metagenome / Metatranscriptome579Y
F005533Metagenome / Metatranscriptome397Y
F005684Metagenome / Metatranscriptome393Y
F006348Metagenome / Metatranscriptome375Y
F008889Metagenome / Metatranscriptome326Y
F011088Metagenome / Metatranscriptome295Y
F013839Metagenome / Metatranscriptome268Y
F014155Metagenome / Metatranscriptome265Y
F018738Metagenome / Metatranscriptome233Y
F019562Metagenome / Metatranscriptome229N
F020709Metagenome / Metatranscriptome222Y
F020898Metagenome / Metatranscriptome221Y
F022899Metagenome212Y
F023616Metagenome / Metatranscriptome209Y
F024331Metagenome / Metatranscriptome206Y
F024413Metagenome206Y
F025308Metagenome202N
F026027Metagenome199N
F028529Metagenome / Metatranscriptome191N
F029596Metagenome188Y
F036277Metagenome / Metatranscriptome170Y
F039149Metagenome / Metatranscriptome164Y
F039165Metagenome / Metatranscriptome164Y
F041166Metagenome160Y
F045808Metagenome / Metatranscriptome152N
F047107Metagenome / Metatranscriptome150N
F052648Metagenome / Metatranscriptome142Y
F053343Metagenome / Metatranscriptome141Y
F056672Metagenome / Metatranscriptome137N
F057676Metagenome136Y
F061913Metagenome / Metatranscriptome131N
F065212Metagenome128N
F066124Metagenome127N
F077772Metagenome / Metatranscriptome117N
F078737Metagenome / Metatranscriptome116Y
F080481Metagenome / Metatranscriptome115Y
F082817Metagenome113Y
F084249Metagenome / Metatranscriptome112N
F087327Metagenome / Metatranscriptome110Y
F091389Metagenome107Y
F103399Metagenome101Y
F103426Metagenome101Y
F103879Metagenome / Metatranscriptome101N
F105867Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0211693_1000275Not Available7470Open in IMG/M
Ga0211693_1001455All Organisms → Viruses → Predicted Viral2784Open in IMG/M
Ga0211693_1002113Not Available2271Open in IMG/M
Ga0211693_1002337All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2147Open in IMG/M
Ga0211693_1002508All Organisms → Viruses → Predicted Viral2073Open in IMG/M
Ga0211693_1002862Not Available1931Open in IMG/M
Ga0211693_1003158All Organisms → Viruses → Predicted Viral1828Open in IMG/M
Ga0211693_1003216All Organisms → cellular organisms → Archaea → Euryarchaeota1814Open in IMG/M
Ga0211693_1004218All Organisms → Viruses → Predicted Viral1587Open in IMG/M
Ga0211693_1004850All Organisms → Viruses → Predicted Viral1470Open in IMG/M
Ga0211693_1005039All Organisms → cellular organisms → Archaea → Euryarchaeota1444Open in IMG/M
Ga0211693_1006656All Organisms → Viruses → Predicted Viral1255Open in IMG/M
Ga0211693_1006819Not Available1238Open in IMG/M
Ga0211693_1007176All Organisms → Viruses → Predicted Viral1209Open in IMG/M
Ga0211693_1008162All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Chaetocerotales → Attheyaceae → Attheya → Attheya septentrionalis1137Open in IMG/M
Ga0211693_1010576All Organisms → cellular organisms → Bacteria1000Open in IMG/M
Ga0211693_1010698Not Available995Open in IMG/M
Ga0211693_1011691Not Available953Open in IMG/M
Ga0211693_1013329All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium894Open in IMG/M
Ga0211693_1015270All Organisms → cellular organisms → Eukaryota835Open in IMG/M
Ga0211693_1015563Not Available828Open in IMG/M
Ga0211693_1017070All Organisms → cellular organisms → Archaea791Open in IMG/M
Ga0211693_1019900Not Available734Open in IMG/M
Ga0211693_1020280Not Available726Open in IMG/M
Ga0211693_1020333Not Available725Open in IMG/M
Ga0211693_1020724All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium718Open in IMG/M
Ga0211693_1021081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus713Open in IMG/M
Ga0211693_1022019Not Available698Open in IMG/M
Ga0211693_1022414All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes693Open in IMG/M
Ga0211693_1023190Not Available681Open in IMG/M
Ga0211693_1024550All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2 → Prochlorococcus phage P-SSM2662Open in IMG/M
Ga0211693_1026204Not Available641Open in IMG/M
Ga0211693_1027718Not Available625Open in IMG/M
Ga0211693_1028116All Organisms → cellular organisms → Bacteria621Open in IMG/M
Ga0211693_1029398All Organisms → cellular organisms → Bacteria608Open in IMG/M
Ga0211693_1030304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium599Open in IMG/M
Ga0211693_1033839Not Available567Open in IMG/M
Ga0211693_1033872Not Available567Open in IMG/M
Ga0211693_1034176All Organisms → cellular organisms → Archaea → Euryarchaeota565Open in IMG/M
Ga0211693_1034435Not Available562Open in IMG/M
Ga0211693_1034868Not Available559Open in IMG/M
Ga0211693_1036666Not Available545Open in IMG/M
Ga0211693_1039380Not Available526Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0211693_1000275Ga0211693_10002753F057676MGDVIKFTNSTMVNTDGTLNQEGKEQALQHIEKCANLLQERVDNKEVDGAVMLLFKDGDLTEDIMAGNIRSTSLLFVLEYIKHQIITGAELFTEEVIEDD
Ga0211693_1001455Ga0211693_10014555F105867MSFSERERFIYHAATLMTMQHLQVLSKSDLQKNLKAVQNNRCVGLTDKQVEEIFLDVEYEALAMMSDAQEKLEKSCAKRQGYKKREFAEDVQEDYK
Ga0211693_1002113Ga0211693_10021135F065212MNLLPEKRKSTKISEKEELFLQNLFENGGHVVAAAENAGYTKGSAGYLRSKLADEIIKRSKNLLASASVKATNRLISMIDSPQIERGDDVRLKAAESLLNRVGLGREETHNHNVQ
Ga0211693_1002337Ga0211693_10023372F091389MVIFELIAEACCSFLFYPAVEAVREGKSQETKIVPINNNCSIDGCNAMRYEESIYCLRHKPSKESKEETQQEENWWEDQKE
Ga0211693_1002508Ga0211693_10025083F025308MISDEDFKFLLQESNGCKKALEIGTGTGKSSAALKLNCEVYSIDKDDIFEYNIDINRFNCESKEYWLDYMHYDFDFVFIDGSIEKIDCEEILKRTKNSFKIVFHDYMPKEDKDPGKNKGWYNMKVFKES
Ga0211693_1002862Ga0211693_10028622F103879EEFEARNRASNRLVYDLMAPQKGLMPASDPEYINFVLSVQMTENNPLPFTKETVYHASADALVTWGVFDLLSEFAFFSQMNRKLQGTQNFVIDPQTCYDTYAHEFAEQLGDRLSPYGHHTHLERIDSGLEQHKPESRLMTHFRRVVQKDKTTVGIGKSWVSTTRSGLSRIVDSRGALKHKREKETRLSLRNWSYRQELALDRRTTYWRERKKMRLYSIEYNLKNVTDTDHNQNSRVTRLYFRDALIESRQKRQLRVSLEPSTYDTFATRKLVVRARKPVAEPSELLAGDIISVWFDWAKT
Ga0211693_1003158Ga0211693_10031584F056672MKAQEYNLTGNEKFSVWFTTMMMMTTAQLDSDSKARIMNMAKIMCVGECLDMQKLENEDPAEMEKSKEKQKEFEMMKDAIWKEMDKIQEVLTACYGEPRKGNKHQRCIHND
Ga0211693_1003216Ga0211693_10032163F077772MTEDSNGPQISGEPTTINVNPGPQVMGGQMQSTNAVAGLVLAILGLTTLLGGAAALCCGPSLCFTIPAMFLVSADKKNIGGTHHPDSGMINASNVINIISLIGALLGLGLYLVFFIFLGGIGAFA
Ga0211693_1004218Ga0211693_10042182F019562MWYHKKFKLQYDTNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNLGIPLKGDFENTPQYFYDQFNHPVESFIVDSPVIFNTRMVHAVPRQLTDTGPRWVLMMDLFEWVDKLFDKIDKKTIWTDTKNFKNA
Ga0211693_1004850Ga0211693_10048502F029596MNKYTVVYTAYGRYDTQMDEPTSRVEYIQGETLDKAIEGHIKHMKKWAIRDIIGEVVFLKGHVEQVDIGHGVGHQMNPTHSDVVITNINNSKINAEDKPNS
Ga0211693_1005039Ga0211693_10050392F005684MIRGKFATIAHRWVHSSMPYGEDEGVGGSLTVPDTEESPLSKMQAVRCKPEVREGRLCNRNVPRQAYDDPERVRFPDRGWNEQPRWSKSKQARSASIGPGRMHS
Ga0211693_1006656Ga0211693_10066563F022899ESKRIPEESVTQNYTRHNRSPLSSEHLRQLDCLYQAYNQEGNSEGDRRFYWAKIQQLTNSLTE
Ga0211693_1006819Ga0211693_10068191F087327RCLVGLPSPSSINFHGPDIFGNEFFTKKVEAFSSHKIFGELKSLLFSALTECF
Ga0211693_1007176Ga0211693_10071762F011088MSFVVPEYTCKHPIFPHHNTVDLMYDAINKHECEQYDWYAYLEFISQNQYDFGGG
Ga0211693_1008162Ga0211693_10081623F047107VNRVRGVRGPVGDRTFLGGQGLHDAAQPREHGQSAVLQFLDLQLFQVTRFGQGQRVESATRGDIPDGEFVKDRVNHASSVRFGTANQDGFDDQNVPEGRVARAFRRQRGDGARELVRDGGAVIRGAQGTRGEPRDAGAVFGGPGASDAQHGPSAVDDFTLGVLFVAERDDRGFAPTRVGTEFRVDVSLDNLGDGLGLFLKVEKSTRQYI
Ga0211693_1010576Ga0211693_10105761F039149MAINANQLHVAKIYPGNYTNVLRYWHEEKSVAFQNANGVDSTFTNQPVGGPVGVVFQPGWIAQQAVGYVDLSYQALGTNNQLSYYTKPYGSGQNSAEQPFLNGDVIVPSPDFH
Ga0211693_1010698Ga0211693_10106981F024331MIEDPYKYVPTKPLYMLIKVEVDKEIVYNQTKAGAYAVNHCNNMEYELADWYYPDDVQYPYIAK
Ga0211693_1011691Ga0211693_10116912F039165MLHRISEFCKKIDSIQAQSNRLYNLKYKQPKTTERDAEINHLIEDIQSQCKLLGNDKNPYNT
Ga0211693_1013329Ga0211693_10133293F002240MSDESKPLIVEGEEVGEYSDTHFYFSKWQMATVELWESPKEFDAYQYDWEVFKEFYKEENEDYKYVCECEEEDFTPGMNGVDTIDLEKWLLEFCEKTDWIKDEYYFIVHWRRYASYTKEVYEDGQEEWCLEDMGESNPDRYQYKDGKIEGHWDTPMEEEE
Ga0211693_1015270Ga0211693_10152702F084249YLHFQTNTPAWMKLNDTKIQEFDIRIRDHRGRDIPAEQLPNFNMTLIFETVDEIDYQKEHTKQYLREAYVKEHDYRK
Ga0211693_1015563Ga0211693_10155631F103426MTNIKTVTNIAFGRELHYVLDNNYADAITQLTGKKTINDNDIIALMQLGLTVNDHSLTDLVAV
Ga0211693_1017070Ga0211693_10170701F045808LVIRMRTDLEFHDRVPLEACKANGLYMMNGSYQAGAGREYCDWFYCGSHKRVQQFDPLQVFDDFYADGIRHMHDLVIETLRTLQIPHSVLDLKAWMMDRSKIK
Ga0211693_1019900Ga0211693_10199001F052648LTGNFQNTKAPNTTSINDKTQEKAGLLMLRSVKYI
Ga0211693_1020280Ga0211693_10202801F022899MTSDYTRHGRSPLSDEHLHSLDVLNKCYSDPATSEGDKRFYWAKIQQLTNSLTDTK
Ga0211693_1020333Ga0211693_10203331F020898MQKVKLNKRIENLTENVLRNANFTMQDADKNSCKTIYKNFSFNSKTKCADGDEMHFTATMHNKFYDGRLCMLTFKNDSFVSMYTLN
Ga0211693_1020724Ga0211693_10207242F041166APSTAAAILINKFTVGLSGSTEGLIQRVELPKTIAPVPQVGDTNLLRPIEVGGNEALYLEKGYILGVGYLGDSPVAVSGGLSPSGVSFWAQGGFY
Ga0211693_1021081Ga0211693_10210811F036277LCSNPFVDKSTQYELHSPNKNKIDLNYLGSASLNN
Ga0211693_1022019Ga0211693_10220191F061913MVEQGNFYVKCHHIYYDQQWLRDVLDSLKPSDWVDGTSVTGVTWTVEECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAVLFPVKGKFNLTPQIFATENYTEIERFNFEKSKIHDNGTPVFFDSRVLHAVPTPIDDEEERVVFSVNIHTHPTEMYKRAIDGTWLSKNTKNIGVSSE
Ga0211693_1022414Ga0211693_10224142F080481MYYSVEIIEEFIRNQIAKPSADTTILRSWYKYARECSEWSYLTYGDAPGFCRLAKIAGKNINEEFGFDVIKMHFYGVWKNNEINNPESIVWEKDHSVDN
Ga0211693_1023190Ga0211693_10231903F066124MGRWDQDNRPDVELLADFRNLQLQLLHCKDRRKNALGKYEIEKEDSKIKESYRELRDLYERSNNRILELICQDKAEGFETFAWFLM
Ga0211693_1024550Ga0211693_10245503F103399WIKDEYYFIVHWRRYAIYTKEEYNDEIYWNVEDMGESQPDRYYYKDGKIEYDWTTPMEEDEYE
Ga0211693_1026204Ga0211693_10262041F025308DEDFKFLLQESQGSTKILEIGTGTGKSTAALRLNAEVYTIDRNDIFEYNIDCYRFITESKVYWESYMHYDFDFVFVDGSITKLDCEQILKRTKDSFKIIFHDYIPGEEDPGKGKGYYNMKVFKETALLDYAMQEKLGGSHCALITLKKDK
Ga0211693_1027718Ga0211693_10277181F053343MVRWWDSKRSGTNLPRQFGLGGYNEYIKRNLSFYSNRYFPMNPQAHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREDDFINAHFQVITY
Ga0211693_1028116Ga0211693_10281161F039165IQAQSNRLYNMKYKQPKTPERDAEINHLIQDIQSQCKLLGSDKNPYNT
Ga0211693_1029398Ga0211693_10293982F082817RNKGKPNSTIFLIRSNITPTDNEITVKAEIANIMGGIICPNNHLSIKGSKYQGEMILLIVFLISD
Ga0211693_1030304Ga0211693_10303042F008889MYTTEQFDKDVAGLRALIKMCDDLEKENNKKADALIKQINGENAYYWRAY
Ga0211693_1030304Ga0211693_10303043F006348MNKKYIVENLEFDPKFKNAKEIEDLKFKRDQAIGIWDIEGKTDDDLVAKLFDEVQNYMGVYLCSLSYCNNRPHPLTAFK
Ga0211693_1031959Ga0211693_10319592F013839VASTSTNKQPMMVDRPFLRGAKITSSTNTVSQVNTEFANLVQLVRVGDLPSEDAAIVEDIFVVSNEGYPDDGG
Ga0211693_1033839Ga0211693_10338392F028529MRLSKFLTEDLETKTVNLTLTFDERSELLRHLEMFDEHIDQLHPLVESVQDKLLGID
Ga0211693_1033839Ga0211693_10338393F005533MSYTKNEIALETFISNTNNQFYYIGEEDDQVAPIDVKKFTEH
Ga0211693_1033872Ga0211693_10338723F018738IMTLYRYYCADTECGKHFCLMASDDMEAAYRADSMAKEWYNTTLKDVYLDKHANPHRRYRPYDKEILSQPVE
Ga0211693_1034176Ga0211693_10341762F005684GMPEGAGGLLTVYDTEESPLSMMRVARRKSGIREGRLCNRNELPREYDESERRRFSEGSWNEHPRWSKSKQARNASTGPGRMQS
Ga0211693_1034435Ga0211693_10344351F024413KTLQGEAPVKETINKPSPNPNKDKPKHKKKNVENFGLKFNGFSELQLTFGIFFIFKNINMINYIY
Ga0211693_1034868Ga0211693_10348681F078737RSLININTPKTQKITRGIATEPNLIKSAKLNLIPKKIIPNFKIYCWVKSKPIIIPGLGVKAFPINIPSSIAISTVEIGLFSVPKISIANTLLIPWENKQNIKANTTPGKIDFRY
Ga0211693_1036666Ga0211693_10366661F014155MNHQRFKFYKHSTEYYKQLYNSITHLEQNCKEVNYQVLPSTINYKRKSKFIKSNSNTNKTHKKVGXVSXFSLSSQSVSC
Ga0211693_1036666Ga0211693_10366662F020709MTNIKTQPKTAFGKTLHYVTDEQQADALKSLTGKKTINDSDIICLQMLGLQVNGVNYIEQLQLVGV
Ga0211693_1037438Ga0211693_10374381F026027MKIALCFAGQPRFINLMNFGNLTDGHDVTTYAHFWWDDEYRGDMFAWNSELKYPDDYDPIDDFEYRMKPKKLVWEEYPKFDMSPYKMVSQMEFPLSDDIVRQSIYRQKCQWTSVKKAV
Ga0211693_1039380Ga0211693_10393802F023616VDKPNHPVLKALPLDFVKKREIVVVAVXDIIPWPENLIKKIAINRIVTDEIFEKKKLEKDKSKVTKNANLKILISSIFLPTQISKKLLNKVAEA
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