NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020156

3300020156: Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C



Overview

Basic Information
IMG/M Taxon OID3300020156 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128792 | Gp0220311 | Ga0196970
Sample NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size287312560
Sequencing Scaffolds18
Novel Protein Genes20
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia3
Not Available3
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSystems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biome → desert → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003605Metagenome / Metatranscriptome477Y
F005665Metagenome / Metatranscriptome393Y
F007590Metagenome / Metatranscriptome348Y
F008527Metagenome332Y
F013725Metagenome / Metatranscriptome269Y
F018997Metagenome / Metatranscriptome232Y
F020734Metagenome / Metatranscriptome222Y
F023249Metagenome211Y
F032486Metagenome / Metatranscriptome180Y
F036406Metagenome170Y
F056709Metagenome / Metatranscriptome137Y
F064351Metagenome128Y
F067178Metagenome126Y
F069970Metagenome123Y
F077150Metagenome / Metatranscriptome117Y
F093572Metagenome / Metatranscriptome106Y
F094368Metagenome106Y
F100738Metagenome / Metatranscriptome102Y
F102900Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0196970_1000447All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes48044Open in IMG/M
Ga0196970_1000682All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae34456Open in IMG/M
Ga0196970_1009691All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2869Open in IMG/M
Ga0196970_1017280Not Available1869Open in IMG/M
Ga0196970_1019657All Organisms → cellular organisms → Bacteria1708Open in IMG/M
Ga0196970_1021059All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1622Open in IMG/M
Ga0196970_1021973All Organisms → cellular organisms → Bacteria1571Open in IMG/M
Ga0196970_1022391All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1551Open in IMG/M
Ga0196970_1025947All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1394Open in IMG/M
Ga0196970_1026702All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1366Open in IMG/M
Ga0196970_1028359All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1308Open in IMG/M
Ga0196970_1040141All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1017Open in IMG/M
Ga0196970_1051135Not Available854Open in IMG/M
Ga0196970_1060041Not Available761Open in IMG/M
Ga0196970_1061403All Organisms → cellular organisms → Bacteria748Open in IMG/M
Ga0196970_1074100All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes657Open in IMG/M
Ga0196970_1100099All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides534Open in IMG/M
Ga0196970_1105359All Organisms → cellular organisms → Bacteria516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0196970_1000447Ga0196970_100044736F069970MNTGKYSQAIKIGDRVTFDNDRVADFKAETSMDNKEIQQYQKLVLAGIDQVGVVKGFMGNLTNVSYPDGWELPVPAKYLVVLPKSDE
Ga0196970_1000682Ga0196970_100068228F036406MNVSEFTETYARRADDELLALWADRSTLVPEAVIALESELRRRELNKQNAFRIKKRRDALAAREKKGFLINQVAAAKYERSMRHFVGWEEPEFYSPYSGRDIRNTFAYIRHKYRVWKAFRDHTGRWPVYSIWFHFLSWIVFVALVAAVFVWVEAHSWGDGWSFVAIAICILSLLGARSLGARLMRKLDWKRCGTYPPPACRN
Ga0196970_1002700Ga0196970_10027002F018997MEQLRKQPELMERFQTILEISSSADGPIKTADEIEGLLIEEMRRLGNTTMGTWAAGAEERLVKQFKEEHPSARARKKKR
Ga0196970_1009691Ga0196970_10096912F056709MKSLQQHSPHEVHKQLHLRMQRSGLSTVRVHVTRKAGKLQFHFTGSDEEVKKAEKILADW
Ga0196970_1017280Ga0196970_10172805F077150MSVIYTHLTYEQYKSLQEQMKAFSETTHKSEGGFYHKSIRLKIDESLIMEFHGPLVGGYGHLEKSGVKENE
Ga0196970_1019657Ga0196970_10196572F008527MDLTPCAQLAQELSHSQHQRISVVRWQNDVKLTSMKTLPKMEISDELDAHINEGIRVSELCKADVIRQALRIGLPLFASRFQPPPLWLEERILEALAEPAEPTSMKQFEKTMTAIANGR
Ga0196970_1021059Ga0196970_10210593F102900MLHEKTGQLLDRARQGERFRIVRQGRAEAFLIPAGEEVDPEWPEIMGEVWKAQGRPGGKRPNPILKERKARNYAGRLR
Ga0196970_1021059Ga0196970_10210594F093572MPVVYADTSALFAVFHPRDEFAAPVTAAVQKVSPDFVYWPFLRYELRHNLRQARVDSYGELAWKALRAAERTQARLRWQPDLRCDSVVESADEFSGQRALEFSAGSADFLHVSAACRLHRLSAVDEFWTCDSEQSKVAKAAGLKVRLFTI
Ga0196970_1021973Ga0196970_10219733F032486QATLKEMQRLSRQVLFETLPHPPRRKRLGKKALGLM
Ga0196970_1022391Ga0196970_10223912F005665MKTVTVREFYHNAGLVDGLAEGKQLVVTANGKPKFVVSKSTRPKMTRKLAEARSVGNSKASSFDGTAFLVSLKK
Ga0196970_1025947Ga0196970_10259472F100738LAQSIRIEDEAERLVALQALETFRALRQAVKAAPHGKGLATVEAVIRDQGFDHLSTMYQQAVREHPESQKRGPAVSPVNAGKTPPSAV
Ga0196970_1026702Ga0196970_10267021F067178MVASEVAIAVSIELLLRRTGLALAAVLWWRSLLALALLALYLRPGRPDWVPRVPQLAFIRIFTGGLTFVGWFGAIGTLSARVTAAILLLDSLVLAYVRGERRPYERRTIAVLAVALLIFAAQAVREPGTVTSVPRGLMFLGIAIFSRAASYKVWERAQGREEHTFWLIAPALVGGALGGLVLGRFTVQPVSAPMMLLLALVAAIGLIGYFYMNEVMRLVGAFYMRVIELWQVPMLWAIHLLTDKA
Ga0196970_1028359Ga0196970_10283593F094368MPDRTACLDPEVKPPDYRVPRGRSGVGAQTALDTLLRDLERVRLAREAYGDLPAASEQQQFRF
Ga0196970_1040141Ga0196970_10401412F007590MEQAEDPQGRYREQIAVAKRLLEQKEQWADRVEWEVVKSGDGWEVIAWRIEHPERKGPSRYLPWGYSVIQLDSRMVAVGYRRKG
Ga0196970_1051135Ga0196970_10511352F064351VMTMLSPNQGATANGLSAVCSSVAGVRERTVRSTAAAEAVAELGR
Ga0196970_1060041Ga0196970_10600412F077150MSVIYTHLTYEQYKSLQEQMKAFSETTHKSEGGFYHKSIRLKIDESLIMEFHGPLVGGYGHLEKSEVKENE
Ga0196970_1061403Ga0196970_10614032F013725MKMYRNRTLAKGQIWKTKVADFEIVGLGKRLIHYKVIRQFGSKQVSRQLSGIEAMENYLKNNAARLVKGASAN
Ga0196970_1074100Ga0196970_10741002F003605MAIGDAAAAAGYPLVPDSGEEGKVKWGARELNRTRDFIANLAGILPASKSGFRSSSGISSGTAEPTGGTDGDIYFKILP
Ga0196970_1100099Ga0196970_11000992F020734VSLLSEVLLVSGVALDLVGAGVLSHAHNAESIVELREEIGEEGSAVGEPDAISTHAQLLAEKRIGFLLLTVGLVLYLCGLVTKSPEGVATMGLVAVGVVVAGLITVVAFTRVVGSRVRRQVEAAAERRDPDRLPEQ
Ga0196970_1105359Ga0196970_11053591F023249KPLADRLEARLGGNKFKANTVLAIKLARAVYFMLKGKTVFDADRLVAALTNK
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