| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300019759 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0217627 | Ga0193961 |
| Sample Name | Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_4_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 291638201 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 11 |
| Associated Families | 11 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater river biome → river → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Delaware | |||||||
| Coordinates | Lat. (o) | 38.7906 | Long. (o) | -75.1644 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000898 | Metagenome / Metatranscriptome | 845 | Y |
| F001488 | Metagenome / Metatranscriptome | 686 | Y |
| F004023 | Metagenome / Metatranscriptome | 456 | Y |
| F012917 | Metagenome / Metatranscriptome | 276 | Y |
| F020094 | Metagenome / Metatranscriptome | 226 | Y |
| F020880 | Metagenome | 221 | Y |
| F040603 | Metagenome / Metatranscriptome | 161 | N |
| F041203 | Metagenome | 160 | Y |
| F061006 | Metagenome / Metatranscriptome | 132 | Y |
| F073262 | Metagenome | 120 | Y |
| F087210 | Metagenome / Metatranscriptome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0193961_1053365 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1028 | Open in IMG/M |
| Ga0193961_1087519 | All Organisms → cellular organisms → Bacteria | 748 | Open in IMG/M |
| Ga0193961_1111922 | Not Available | 642 | Open in IMG/M |
| Ga0193961_1115597 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | 630 | Open in IMG/M |
| Ga0193961_1125608 | Not Available | 600 | Open in IMG/M |
| Ga0193961_1134961 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata | 576 | Open in IMG/M |
| Ga0193961_1142077 | Not Available | 559 | Open in IMG/M |
| Ga0193961_1147546 | Not Available | 546 | Open in IMG/M |
| Ga0193961_1151314 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 538 | Open in IMG/M |
| Ga0193961_1165331 | Not Available | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0193961_1053365 | Ga0193961_10533652 | F001488 | LFLQEHLNHILRQIKKQNVKEKINMARLELTLNFPKDFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALHSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQHLEPSEYITIKLAYGSNVSQEKK |
| Ga0193961_1087519 | Ga0193961_10875193 | F012917 | PLNDCGYYDKYSSFGEINQVWDKKKHLRRKRWSQE |
| Ga0193961_1111922 | Ga0193961_11119221 | F061006 | PKDRANDIDNTLTWLRNRGVDEPKDEDSPFQKTQSIPLPDKRSPEQKAKDLDDVLSWVRNPKENEDNPNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFDDTKPFSPMKSIPIDKRTPEQKAKDVDAILNWQRNPKENESPETEPFRKIDQMLPKKPGQSPKDRANDIDNTLTWLRNRGVDEPKDEDSPFQKTQSIPLPDK |
| Ga0193961_1115597 | Ga0193961_11155972 | F040603 | MMYYTKHKTLADTSETSLFTVPTGYVLWVNYIFIANHGNSTNNVSCWWEDGAGVDQLYFLDNNSLNSGAKEILGGQADAPIFVLHNGDVV |
| Ga0193961_1125608 | Ga0193961_11256082 | F000898 | EGKQALITKGVWEEVTEEGVTQMVYINGTRAVVNIGKIVKTPGTYGPDGHEITPPVYYDGWAYDIMSTDTIDFGANEVYPGDSAAHSFFGWPRNAEVPPPAPPVDEEE |
| Ga0193961_1125924 | Ga0193961_11259241 | F087210 | MRFLIAALAFASAETALAHTPDTGFLSNFGHQLTSLHHSPAAML |
| Ga0193961_1134961 | Ga0193961_11349611 | F004023 | TVFFGLVLCCTHLSEITLTIAANIFHTFFDFKGKFYXXIFTDKQLNTDTMIRLAYGHYLIAFYMAYLGLIQGVDMHYDXKNETTFDGLDTEMVXXDEALSQELGHMADVLVIITIICWFLYGEPEALSYEIFMXGDIGIVTDVRFYGVAPHXYFRPFMAXLIACPYHRTGIFGLLFYFLVLFYQPALHGTT |
| Ga0193961_1142077 | Ga0193961_11420772 | F041203 | LAAAGYAAARNNDLTHYFLRPHNQLPQGYLDHCRKFFKELSGKRQASSGKPQALIQKNLHKPGTRVKNRFNRKV |
| Ga0193961_1147546 | Ga0193961_11475462 | F020880 | MIDKWIYNFFAALDKLCLMMDNIFKFMIGLKMNYYFTGLLIIMLVLLAFCGGPSV |
| Ga0193961_1151314 | Ga0193961_11513142 | F020094 | FTNLYNLKVKMNYFMSYMSLSFFNHQKLISYVININLSSTNTLINLNDIKGNPKFFYSAGMFNLQKNQKTRQPKAIITILRALLSKSKIFKTKPVAVHFNNLFFNHQSYIFKKLKQKIFIKLVTSYKYGSHNGCRLKKKKRIKVRTRTRKL |
| Ga0193961_1165331 | Ga0193961_11653311 | F073262 | LLAPQSATNTTGANLNASLNRPKALATLQDKCPMLVATLLAACKVATTAALPLHWSKVHATLKPAEWAACHARALDTAGSEIDKPAPLIPPPLAQDLGNGRFTASSAHNPTEGMSIFCIQPSCMPNSQELCNCNRTFEVLVQGVGMASFKAQQMVLIKDKLDLPQSSEEF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |