NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019076

3300019076: Metatranscriptome of marine microbial communities from Baltic Sea - GS683_0p8



Overview

Basic Information
IMG/M Taxon OID3300019076 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129055 | Gp0214184 | Ga0188856
Sample NameMetatranscriptome of marine microbial communities from Baltic Sea - GS683_0p8
Sequencing StatusPermanent Draft
Sequencing CenterJ. Craig Venter Institute (JCVI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9329727
Sequencing Scaffolds16
Novel Protein Genes20
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
Not Available5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Marine Microbial Communities From Baltic Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)N/ADepth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F001881Metagenome / Metatranscriptome622Y
F004988Metagenome / Metatranscriptome416Y
F006322Metagenome / Metatranscriptome376Y
F009839Metagenome / Metatranscriptome312N
F014004Metagenome / Metatranscriptome266Y
F015080Metagenome / Metatranscriptome257Y
F023097Metagenome / Metatranscriptome211Y
F027828Metagenome / Metatranscriptome193Y
F033401Metagenome / Metatranscriptome177N
F034907Metagenome / Metatranscriptome173Y
F036207Metagenome / Metatranscriptome170Y
F042350Metagenome / Metatranscriptome158Y
F049595Metagenome / Metatranscriptome146N
F050990Metagenome / Metatranscriptome144Y
F058516Metagenome / Metatranscriptome135N
F084181Metagenome / Metatranscriptome112Y
F090883Metagenome / Metatranscriptome108Y
F098220Metagenome / Metatranscriptome104N
F100975Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0188856_1000008All Organisms → Viruses → Predicted Viral3165Open in IMG/M
Ga0188856_1000018All Organisms → Viruses → Predicted Viral2554Open in IMG/M
Ga0188856_1000031All Organisms → Viruses → Predicted Viral2034Open in IMG/M
Ga0188856_1000069All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1529Open in IMG/M
Ga0188856_1000075All Organisms → Viruses → Predicted Viral1450Open in IMG/M
Ga0188856_1000106All Organisms → Viruses → Predicted Viral1243Open in IMG/M
Ga0188856_1000116All Organisms → Viruses → Predicted Viral1204Open in IMG/M
Ga0188856_1000123All Organisms → Viruses → Predicted Viral1181Open in IMG/M
Ga0188856_1000177All Organisms → Viruses → Predicted Viral1032Open in IMG/M
Ga0188856_1000236Not Available900Open in IMG/M
Ga0188856_1000299Not Available823Open in IMG/M
Ga0188856_1000359Not Available763Open in IMG/M
Ga0188856_1000407Not Available720Open in IMG/M
Ga0188856_1000579All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus618Open in IMG/M
Ga0188856_1000648Not Available589Open in IMG/M
Ga0188856_1000761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium554Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0188856_1000008Ga0188856_100000810F001881MTERSQNFMNKIWELRNAGADTEEKLVAAILKVVAENTKSYTAQDNLIVLDKNDILELAEELEE
Ga0188856_1000018Ga0188856_10000188F058516MSNARHCITCNKKYYPKAWNSYPEDSYYYENGETTRFAVRPQDKRFHSLGCMKEWIAINSIAFANLVDSISYNKIQDINNNQTIEKG
Ga0188856_1000031Ga0188856_10000311F009839CDGGVDYSDLCEKYKVNYVHSYMRIGRRNSGHPSGVYGFTKDESLHWIHMFREAARHVKANGGTHMIMMEDDVLTQGEVNINPIWECAGFEVPGNTIAPALLDFIRDKYGANPNVNWYGAGGGSIYNIETFLDNYHKIYDFIDFDFENILSNMDYRFGWLDLYMQIAYFIIGKHYSINTNLTEVWKTPNFRESDFTLVHAYKELY
Ga0188856_1000069Ga0188856_10000694F000720MTLQDDKIMRHKIPNRMMSATFTLPIDDRKVVGIVNYIATEEGIIPMALWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVHYFVKNIEEIITGVQPNKKQRMLSTDPYAAQMKE
Ga0188856_1000069Ga0188856_10000695F090883MVTIALKMKRINNCRDMLSKVTCPRMRLMWKRNYEKLLREYWEETGERILNAAGQVH
Ga0188856_1000069Ga0188856_10000696F004988RCNGNGYIRIMPVVAGVFDKATETDCPMCEEIVTHMGQRITTHSGYVKLPIKDTRKNIEGGRESKTKWSGETLPEVGKGCP
Ga0188856_1000075Ga0188856_10000757F027828MKTNTMLDTVMTIEDILTEKQLLVLQDMLYVYKELQEEVHNYPEPDTLFTKTQFELFDLFDI
Ga0188856_1000106Ga0188856_10001062F034907MITLAIGGGIITLFSILFYLEDRDGVGIYDPDPSASYRHNQKRKNRN
Ga0188856_1000116Ga0188856_10001161F033401MSNLVDLHNLVTTECKRRRLELIYLPEKLVRRSTDVIVSCPCTGKRNMSIRNFIVTYEKGGEAFCCKRKSKVGKNNPSFGKPTWNAGTVGVSKSYGFFGFKEEWADREDYLYFIETIYGTYKIGRSFHGIKYRFTETVKELGEWKASHKEVFDCERYILDTYKHHQNKIDGIIGGSEHFVKELPIQEVVDYANEKLKVSRNTY
Ga0188856_1000123Ga0188856_10001233F036207MINFISGTIFGIIVATIGFSSVATTLDSIMFNLQKTTVELNRPQLPAPVAAE
Ga0188856_1000177Ga0188856_10001771F100975AGMKKAFEKLGCEVHWFSDKSFPSQSQFDYSNCIFFVDNQGPLDWNVPIVDTGIYFAYDKFTNLDKYLDKVKCLINYRVAEFKHPIIDGDRYVEVERGVVFDTQAPEPYNVIYFNYATNLLPEEIDLGFSKKKRNDEYNFVGTIHTPRPNADPLHQQFIEIVKNKNIPFNHYNPNINPATDQEHVEILQNSMFVPDFRPAEQKIQSYVSDRIMKAISYGCLVVSDCHYTKDFISKDLLTSENSQEIFDLGMSNQYNIELITHLMEIIKRDHTYMNRCRGILSIVEEIQS
Ga0188856_1000236Ga0188856_10002362F014004MTTLTLQVTEVRFDFDDEDFTLEEQQAVLDDVLGNVFEVEVDDGYDDEVVADALVEEVTDYAGWCVCSLDFRHVLNTF
Ga0188856_1000236Ga0188856_10002364F050990MTPDSLNFTGDAVTFLGLIGVTSTLIILVSVFRSYFNSPLRK
Ga0188856_1000299Ga0188856_10002992F098220MRTDKQIMATALKNIQSLTDAEYDRYIEIKKERSTQTRRNGGMIKGFSPIARPQRFKGIF
Ga0188856_1000359Ga0188856_10003592F015080MFDLLNFRPHNLLHCVHAQYKFENDWEISVVAGPPNCGLYGNLNDGTYEVAIIRPNGNMTDDVNGWNTKQEVSAMMWVLAQL
Ga0188856_1000407Ga0188856_10004072F006322MPAKRNSFGKVISGRGSELTDLQSQFLEGIRDNGMDASSKISKELGYTNYYRDRRTTGTAFHKALMEIANSELKSIEAAKGTNLTALIRIRDMAISNDDMKVAMEAIKIINDMQGYKAPTKVEQTKIDITATIDLTAPDEEQDYLDIDAD
Ga0188856_1000579Ga0188856_10005792F023097MKSYCVKDHLTGHVFKVLFTEQDFQEFLKSHPDIDECIDCIECDDAPSICIE
Ga0188856_1000648Ga0188856_10006481F042350MPGRESDYERGFIRGVSSMMNLITSDKVKRLDKSNVLRYAKELVESEKERETNAPY
Ga0188856_1000761Ga0188856_10007611F049595SKGGEVMQQVDYRFENHGSIWLCHPMTADAKDNLRQACDADDAPFNISWCDALVVDPRFVNDVAKQLTDKGWIIE
Ga0188856_1000761Ga0188856_10007612F084181MKTKTYDVQIEAIVTKTIRVNAIDENAAYELAHEIFTVTRDNHEERYEQHTLNILEVSDEDRNEKPAWERGDR
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