Sample 3300016680

Basic Information
IMG/M Taxon OID	3300016680 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0126301 \| Gp0197885 \| Ga0180046
Sample Name	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES103 metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0126301 | Gp0197885 | Ga0180046

Sample Name

Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES103 metaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	34553700
Sequencing Scaffolds	24
Novel Protein Genes	24
Associated Families	19

Dataset Contents

Total Genome Size

34553700

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	3
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	2
Not Available	14
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → PX clade → Phaeophyceae → Ectocarpales → Ectocarpaceae → Ectocarpus → unclassified Ectocarpus → Ectocarpus sp. CCAP 1310/34	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → PX clade → Phaeophyceae → Ectocarpales → Ectocarpaceae → Ectocarpus → unclassified Ectocarpus → Ectocarpus sp. CCAP 1310/34

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → humic lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → humic lake → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	6
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F000396	Metagenome / Metatranscriptome	1185	Y
F004452	Metagenome / Metatranscriptome	437	Y
F008512	Metagenome / Metatranscriptome	332	Y
F010032	Metagenome / Metatranscriptome	309	N
F010305	Metagenome / Metatranscriptome	305	Y
F012351	Metagenome / Metatranscriptome	281	Y
F017072	Metagenome / Metatranscriptome	243	Y
F028687	Metagenome / Metatranscriptome	190	Y
F032673	Metagenome / Metatranscriptome	179	Y
F038944	Metagenome / Metatranscriptome	164	Y
F047451	Metagenome / Metatranscriptome	149	N
F055378	Metagenome / Metatranscriptome	138	Y
F057844	Metagenome / Metatranscriptome	135	N
F061430	Metagenome / Metatranscriptome	131	Y
F061495	Metagenome / Metatranscriptome	131	N
F070806	Metagenome / Metatranscriptome	122	N
F087216	Metagenome / Metatranscriptome	110	N
F092159	Metagenome / Metatranscriptome	107	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0180046_100824	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	541	Open in IMG/M
Ga0180046_103552	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	560	Open in IMG/M
Ga0180046_107180	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	991	Open in IMG/M
Ga0180046_108079	Not Available	729	Open in IMG/M
Ga0180046_108326	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → PX clade → Phaeophyceae → Ectocarpales → Ectocarpaceae → Ectocarpus → unclassified Ectocarpus → Ectocarpus sp. CCAP 1310/34	852	Open in IMG/M
Ga0180046_108439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	707	Open in IMG/M
Ga0180046_114047	Not Available	780	Open in IMG/M
Ga0180046_124030	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	775	Open in IMG/M
Ga0180046_125268	Not Available	808	Open in IMG/M
Ga0180046_127491	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	505	Open in IMG/M
Ga0180046_128983	Not Available	610	Open in IMG/M
Ga0180046_133225	Not Available	520	Open in IMG/M
Ga0180046_134799	Not Available	549	Open in IMG/M
Ga0180046_135164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	800	Open in IMG/M
Ga0180046_136530	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	797	Open in IMG/M
Ga0180046_137091	Not Available	807	Open in IMG/M
Ga0180046_139627	Not Available	570	Open in IMG/M
Ga0180046_141151	Not Available	727	Open in IMG/M
Ga0180046_143378	Not Available	668	Open in IMG/M
Ga0180046_147831	Not Available	975	Open in IMG/M
Ga0180046_148042	Not Available	1000	Open in IMG/M
Ga0180046_149918	Not Available	536	Open in IMG/M
Ga0180046_151643	Not Available	639	Open in IMG/M
Ga0180046_152768	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180046_100824	Ga0180046_1008241	F012351	MFADLHHLHQFVSLDQGGSVTGASWVGGTHATDANIYFGALHINNDNVKEDWLDDDQVSDMSTGGNGPVTRNEGMYNAYTAVKTYWSDTIVMDNLRGADATGVATPGAQEVTSTAAAVSGNGNTTHTYSGDSFY
Ga0180046_103552	Ga0180046_1035521	F012351	PRWVFDSENNALSQQMFADLHHLHQFISLDQGGSVTAASWVGGTDAGEANIYFGALHIDSTNVAEDWLSDDQVSAMNVGGNGPVLRNEGMYNNYTAVHTYWSDTTVMDNLRGGDATGVATPGAQEVVSTSDGVSGFGNTTHSYSGDSFY
Ga0180046_107180	Ga0180046_1071801	F032673	AVPIDQVKPEASAPQPGRQTRLIACIVGCIAVLALIAMAYQFSMEDDGTATLAALKAQEINDILSKAKHMSTAQLQAEVDSLESRKARPLRTTSLVASEDTEANPLGGVLENVPATIVAPVPGPPDFNGASAVVARLPNIGFAPSMLEEKGFESRGTFTVRQSRAGESFYLRIYGKLNHNIRCTIRGYRNLMGDFTGNTIYTGFKLIYTGKSQIHTGHIPRGIQGEFDIMTCRDLGNGEVQYFRIRYD
Ga0180046_108079	Ga0180046_1080791	F047451	RMGVHCFGFLCVKGVDKWCAHCIIDEWVCYAKGFGITFEVGLLFPRLKGKGQVNCNKRWKAKNILESLERDLRRYTLYQGETAQSFRHGGTVDSLETGQNLERTMYLAFMKNKTTAQNYAKGLCYLFPKQNWERAGVDTSEIDSVTLALQMQSWRAWKNEGPPLSAIPLSL
Ga0180046_108326	Ga0180046_1083261	F055378	MEHIKEILAQGLEVSLEDAIFRNCDSFQPANLKNNIPFWEEEILKDHPHKDTILRWLQGVKIEEFLNSFTTGSFQDIELNSFYPAPQQFDNYVPEEFIQFMEENIQEWINLGVLERWDDVRSAEDPLTPRVVCPLGVEPKKPRGLWDGRYVNEFCRDIPFTMDNAARVAEVSWVNSYLFKLDHKNGYFHVPLHKDSRKYFGVFWKGVYYVLTGFHLGGNLVPSSTTLLLRQLICISGLLVFPCWDGLTICWE
Ga0180046_108439	Ga0180046_1084391	F000344	MRPKHPHAAESGVGKHTARESERAQACAAGKERVANAHPHNLALEPQGF
Ga0180046_114047	Ga0180046_1140471	F017072	MRMRDLAARNDEKPFRVESSSSSWFRAWTNRSHPEGEKLLLWISTLRATLAGSSQIGTAQRKTPKGGQKERTHREEHGNSAGSVKNFQALAMLKTTPLDCEKKSNLRDERRDPWQGANALSKAAADPVLMVKTRTTKSQACLDLVCRPVAQPPAEAS
Ga0180046_124030	Ga0180046_1240301	F010305	LKRAEKPHSKFRRRKALDGLATRPETPLAVENGVGKLTAPEKGAPNV
Ga0180046_125268	Ga0180046_1252681	F057844	KSAATMERCKMDRFMKTMENDIHGYRGVRKLRMKQRRAIYAFCYIAIKRLAGAGHVIAPNTIRIPGDTGLVFNCTWDKTLRMGVHCFGFLCVKDKAFGWCAHCIIDEYVNFARTFSISFDEGLLFPRLHSNGSVKPGKRWTAKVVLDSLVRDLKRCNLYAGETAQSFRHGGTVDSLQTGKSLEQTMYLAYMKNVSTAKIYAKGLSVLFPKLDWSSLGVDVAATDNVTLALQMQGWRAFASKGLPL
Ga0180046_127491	Ga0180046_1274911	F092159	SVESGADVPVQQTSMLNRVVATTMPVQQTTMLNWANLSDRAQKVKGLNFCASQFVTEDEVKYCVAKLFSGDVKFATPADY
Ga0180046_128983	Ga0180046_1289831	F087216	EVCEPIHLDQQLALDPYQTCSRCFQLIRLAAPRGLGSSSGLTDQSGKSIRSSGLYLAFNNLLFASTSSSL
Ga0180046_133225	Ga0180046_1332251	F070806	MDWFHKLSTVILIILAHYYDFVLGRRACCAHFCITDDLEKSNEMITHCVDHVREFYDRKNAAAVPVQPPNAHLFLGSDNAASQAKNNYHFAWMVDYVEEDHGLQT
Ga0180046_134799	Ga0180046_1347991	F000396	PISQPNSPPACNGTELCSQNHRALSLQLPAAFFRTRRINASRLTCQLSWLEPASRSGLSLSRNDCPFPGHHFEVKAPDLLLRRTAVRSSCPFGPRFPRALRFAPARARSLPKSRCPTPVRHSQPFFGSPLPFGAFRTLKDQSVQPDSWPGSSPSERSRLPITPRHRFYFISADARSPLQA
Ga0180046_135164	Ga0180046_1351641	F038944	MRSRTSHAAKSGVGEHRARESESAQRCATGKSAWR
Ga0180046_136530	Ga0180046_1365301	F010032	PRMVSASSRLVNTLAASVLLGCIAFVAWRVNESQSAEELFQAAALEKQQTTELSFLQTSAFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVIRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVVFIGNYVAVQFMNDVYGFQLMDDYQNGPYYRNDRNVRNTPFQFLPSRIEQASIETYAVNTRSIPPGGKSMLDTLGATVAFVVRYDLGTVCWIGYNYNTPFHADQWTRVLHAAIDM
Ga0180046_137091	Ga0180046_1370911	F061495	MSDQSLAVKSSSGTQMKKKIFRQQKVIKQDLFIPAPSAKTFVGVHYYMHGRFALYDQECLRRNLLPYIRGAFYDHGFSPVDASKVLKLVIGFSQKRSMQFKGPIDFSGVFADSAADYSGQFMLQDRSMVDQLVDVIFSMQETVARNQTAVPLAPRIISAAFSVESRYRKVVIMYTAYSPDDCLRVTIEGERNKPNTFTFEPTATWIQNRYSNSSSLAAAND
Ga0180046_139627	Ga0180046_1396271	F004452	VCREALILGQTKRPWGSETAKHPALLNALLRAVHAGGGLSWKS
Ga0180046_141151	Ga0180046_1411511	F008512	LLLCISTVRTALAGLSKIKTAQRKTPKGGQKERTHREEHGNSAGSVKNFRVPAMLKTTPLDCEIKRNLREKRRDPWFRANAPSKAVADPEPVVKTRMKIAGVS
Ga0180046_143378	Ga0180046_1433781	F028687	MVINYIQEDPKAVQRQEHAATMRLLLEETLGTFPGYFFVTLFLNQAVQRVTFGYVTRATSFNDVRFHLHVLEAYVEPGKEASNYFNFHSFLMPTQICYNRNCACPLQHTQLVEYSKILTICVATTSAGNMVHTVGQIDNLSNGANA
Ga0180046_147831	Ga0180046_1478311	F061430	GVILSNDVSSLPTGTVCLANDSLLRGVEQIQELNLFAASYDSMVGNGLARLRDFLAPPRPSNSRIVRLTTYNENEPWETVDYNKVKRGLLADFAEVRQRVISKSDFQINNRGLSVILDRDELKDKPEWQQVHTKWLIDLLNRATVQEAIAILQAAAITTGRTWDSASNPDLDIVNLLLVLANTTGFYPQNVAYGDAAHFKRQNAYESQLTAGSLARASQFTEEQLATALGVATVLINAERYQNTSTAKQELIGQNVLIFTSIKDTTPMDASNVVRHIVSGAGASGEYAVYITDLGIKKIMLTVENYEYLHTQHTSGIAWVPIS
Ga0180046_148042	Ga0180046_1480421	F057844	SVHYRDCPNIGAPTFERCPDRVLCAKRHQAASMRIGIVSKLRRGFEDVGRKGVYNPRTLQGDPTRSAIVSEYLGFIRMEQGMSGVVPNQAVTMTKGKMDKFMDAMGLDIEGRRGLTRLRMRERRAMYAFCFSAIKRLAGAGHVVASNTIRIPINEGLVFNCTWDKTLRMGVHCFGILCVKETDKWCTHCIIDEWVLYARTWGISFETGLLFPRLKKEGKVDHRKQRWKSKNISDSLVRDLKRYALYQGETPQSFRHGGTVNSLETGHDLERTMYLAYMKNRTTAQNYAKGLCFLFPKFNWKKAGVDTADIDSVTLAMQMQSWKAWRNQGPPL
Ga0180046_149918	Ga0180046_1499181	F055378	LQGVEIEEFLNSYTKGTFQQITLDSYYPSPQQFDNYVPEQFEQFMEENVQEWINLGVLQRWNDVRRPEDPDIPQVVSPLGVEPKKPRGLWDGRYVNEFCRDIPFSMDSAAKVAEVAWVNSYLFKLDHKNGYFHVPIHEKSRKYFGVFWKG
Ga0180046_151643	Ga0180046_1516431	F047451	KTMENDIHGYRGVRKLRMKQRRAIYAFCFTAIKRLAGAGHVIAPNTIRIPGDTGLVFNCTWDKTLRMGVHCFGFLCVKGKIFGWCAHCIIDEYVVFARTFGISFNEGLLFPRLHSDGSVKPGKRWTAKVVLDSLVRDLKRCNLYGGETAQSFRHGGTVDSLQTGKSLEQTMHLAYMNVSTAKIYAKGLSVLFPKLDWSSLGVDVTAIDNVTL
Ga0180046_152768	Ga0180046_1527681	F012351	DLHHLHQFVSLDQGGSVTGASWVGGTHATDANIYFGALHINNDNVKEDWLDDDQVSDMSTGGNGPVTRNEGMYNAYTAVKAYWSDTIVMDNLRGGDATGVATPGAQEVTSTAGGVSGNGNTTHTYSGDSFY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300016680: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES103 metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences