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Sample 3300014121
3300014121: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4 SAF170 SPAdes reassembly
Overview
| Basic Information |
| IMG/M Taxon OID | 3300014121 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0095512 | Gp0111874 | Ga0181457 |
| Sample Name | Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4 SAF170 SPAdes reassembly |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 9462769 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Surface (non-saline) |
| Location Information |
| Location | USA: Jet Propulsion Laboratory, Pasadena, California |
| Coordinates | Lat. (o) | 34.1 | Long. (o) | -118.1 | Alt. (m) | N/A | Depth (m) | 0 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F000313 | Metagenome / Metatranscriptome | 1323 | Y |
| F001245 | Metagenome / Metatranscriptome | 737 | Y |
| F005526 | Metagenome / Metatranscriptome | 397 | Y |
| F056731 | Metagenome / Metatranscriptome | 137 | Y |
| F058758 | Metagenome / Metatranscriptome | 134 | Y |
| F090646 | Metagenome | 108 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0181457_10292 | Ga0181457_102923 | F001245 | MRKQILGNPAPYVEVRAAAISVGLDPGGSECRALVDELLRAGHLQRYPSSSLTAHGLYRLTDSGIVAADEAALLEARRRAQLTDEREQ* |
| Ga0181457_10292 | Ga0181457_102924 | F005526 | MRYVHPADRLRPWFGVAVGLAALVGMLAFGILGRNFGTLKHLKALNDAGAWLTISLIEASAGILALLLAAVALGERIERGVEGPHFISLIRLTARGGFATIAPAVIFDVLKVTTTSVVQEGWLITALVVVQVALLAATIGAFAFMLSCLWATLKVTFVGVPESTPEENEAEESPDARS* |
| Ga0181457_10326 | Ga0181457_103262 | F090646 | MANREQRSNKEKKKPKADKKGAAPAAGGIKAPAYVEPQLIRKPHKGKDWT* |
| Ga0181457_11398 | Ga0181457_113983 | F000313 | MPKTSEQWLLFKYVDGEFTPLSKPFKSKEQAEKARLKYPERERKKIGIGVIRTQS* |
| Ga0181457_12490 | Ga0181457_124901 | F056731 | MEILVDKIIIERHPSKIDTDGRRHYIIRAIPYQDPQQEAERLKAVHEARVKIVPRV* |
| Ga0181457_13430 | Ga0181457_134301 | F058758 | ARRGILKECIAGRGETEYARALMTLPDFILEREN* |
