Sample 3300013059

3300013059: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300013059 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0090294 \| Gp0175822 \| Ga0154012
Sample Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33444858
Sequencing Scaffolds	67
Novel Protein Genes	71
Associated Families	65

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	42
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora halophila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces aurantiacus group → Streptomyces aurantiacus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium P201	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia jinanensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	USA: Michigan
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F001233	Metagenome / Metatranscriptome	741	Y
F001862	Metagenome / Metatranscriptome	625	Y
F001975	Metagenome / Metatranscriptome	609	Y
F002020	Metagenome / Metatranscriptome	603	Y
F002562	Metagenome / Metatranscriptome	548	Y
F003193	Metagenome / Metatranscriptome	501	Y
F003269	Metagenome / Metatranscriptome	496	Y
F003383	Metagenome / Metatranscriptome	490	Y
F003699	Metagenome / Metatranscriptome	473	Y
F004214	Metagenome / Metatranscriptome	448	Y
F004459	Metagenome / Metatranscriptome	437	Y
F004678	Metagenome / Metatranscriptome	428	Y
F005458	Metagenome / Metatranscriptome	400	Y
F005880	Metagenome / Metatranscriptome	387	Y
F006338	Metagenome / Metatranscriptome	375	Y
F007446	Metagenome / Metatranscriptome	351	Y
F007670	Metagenome / Metatranscriptome	347	Y
F007821	Metagenome / Metatranscriptome	344	Y
F008406	Metatranscriptome	333	N
F010412	Metagenome / Metatranscriptome	304	Y
F010631	Metagenome / Metatranscriptome	301	Y
F010923	Metagenome / Metatranscriptome	297	Y
F012586	Metagenome / Metatranscriptome	279	Y
F014985	Metagenome / Metatranscriptome	258	Y
F015442	Metagenome / Metatranscriptome	254	Y
F018214	Metagenome / Metatranscriptome	236	N
F021561	Metagenome / Metatranscriptome	218	Y
F021791	Metagenome / Metatranscriptome	217	Y
F023966	Metagenome / Metatranscriptome	208	Y
F029165	Metagenome / Metatranscriptome	189	Y
F029597	Metagenome / Metatranscriptome	188	Y
F031241	Metagenome / Metatranscriptome	183	Y
F031585	Metagenome / Metatranscriptome	182	Y
F032410	Metagenome / Metatranscriptome	180	Y
F035772	Metagenome / Metatranscriptome	171	Y
F037503	Metagenome / Metatranscriptome	168	Y
F039900	Metagenome / Metatranscriptome	162	Y
F041412	Metagenome / Metatranscriptome	160	Y
F043723	Metagenome / Metatranscriptome	155	Y
F043786	Metagenome / Metatranscriptome	155	Y
F048472	Metagenome / Metatranscriptome	148	Y
F049584	Metagenome / Metatranscriptome	146	Y
F050586	Metagenome / Metatranscriptome	145	N
F051345	Metagenome / Metatranscriptome	144	N
F053640	Metagenome / Metatranscriptome	141	Y
F055114	Metagenome / Metatranscriptome	139	N
F057406	Metagenome / Metatranscriptome	136	Y
F061831	Metagenome / Metatranscriptome	131	Y
F065371	Metagenome / Metatranscriptome	127	Y
F067704	Metagenome / Metatranscriptome	125	Y
F067753	Metagenome / Metatranscriptome	125	Y
F068181	Metagenome / Metatranscriptome	125	N
F078550	Metagenome / Metatranscriptome	116	N
F079092	Metagenome / Metatranscriptome	116	Y
F079169	Metagenome / Metatranscriptome	116	Y
F080455	Metagenome / Metatranscriptome	115	Y
F082288	Metagenome / Metatranscriptome	113	N
F083053	Metagenome / Metatranscriptome	113	N
F089744	Metagenome / Metatranscriptome	108	Y
F092500	Metagenome / Metatranscriptome	107	N
F103562	Metagenome / Metatranscriptome	101	N
F104201	Metagenome / Metatranscriptome	100	Y
F105659	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0154012_102103	Not Available	643	Open in IMG/M
Ga0154012_103575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	523	Open in IMG/M
Ga0154012_103969	Not Available	579	Open in IMG/M
Ga0154012_104984	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
Ga0154012_107406	Not Available	507	Open in IMG/M
Ga0154012_109103	Not Available	571	Open in IMG/M
Ga0154012_110028	Not Available	938	Open in IMG/M
Ga0154012_112406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	525	Open in IMG/M
Ga0154012_112457	Not Available	660	Open in IMG/M
Ga0154012_112888	Not Available	949	Open in IMG/M
Ga0154012_114549	Not Available	1107	Open in IMG/M
Ga0154012_116095	Not Available	550	Open in IMG/M
Ga0154012_117998	Not Available	537	Open in IMG/M
Ga0154012_118858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora halophila	579	Open in IMG/M
Ga0154012_119666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1144	Open in IMG/M
Ga0154012_119947	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
Ga0154012_121980	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
Ga0154012_124365	Not Available	752	Open in IMG/M
Ga0154012_124492	Not Available	549	Open in IMG/M
Ga0154012_126420	Not Available	729	Open in IMG/M
Ga0154012_130836	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	524	Open in IMG/M
Ga0154012_130854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	743	Open in IMG/M
Ga0154012_133197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
Ga0154012_134139	Not Available	677	Open in IMG/M
Ga0154012_138114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces aurantiacus group → Streptomyces aurantiacus	618	Open in IMG/M
Ga0154012_139223	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19	1325	Open in IMG/M
Ga0154012_141702	Not Available	603	Open in IMG/M
Ga0154012_142179	Not Available	539	Open in IMG/M
Ga0154012_142744	Not Available	593	Open in IMG/M
Ga0154012_143011	Not Available	706	Open in IMG/M
Ga0154012_143208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	842	Open in IMG/M
Ga0154012_146927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
Ga0154012_147106	Not Available	573	Open in IMG/M
Ga0154012_147398	Not Available	517	Open in IMG/M
Ga0154012_147600	Not Available	542	Open in IMG/M
Ga0154012_148345	Not Available	1002	Open in IMG/M
Ga0154012_148797	Not Available	535	Open in IMG/M
Ga0154012_151148	Not Available	577	Open in IMG/M
Ga0154012_152726	Not Available	604	Open in IMG/M
Ga0154012_153762	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium P201	1263	Open in IMG/M
Ga0154012_155090	Not Available	514	Open in IMG/M
Ga0154012_155837	Not Available	724	Open in IMG/M
Ga0154012_156901	Not Available	521	Open in IMG/M
Ga0154012_159992	Not Available	585	Open in IMG/M
Ga0154012_160654	Not Available	618	Open in IMG/M
Ga0154012_160869	Not Available	791	Open in IMG/M
Ga0154012_161931	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
Ga0154012_162956	Not Available	569	Open in IMG/M
Ga0154012_165795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia jinanensis	593	Open in IMG/M
Ga0154012_167216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	727	Open in IMG/M
Ga0154012_167428	Not Available	764	Open in IMG/M
Ga0154012_170358	Not Available	585	Open in IMG/M
Ga0154012_171109	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
Ga0154012_171786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	808	Open in IMG/M
Ga0154012_172025	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	582	Open in IMG/M
Ga0154012_172889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
Ga0154012_172917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	531	Open in IMG/M
Ga0154012_173714	Not Available	525	Open in IMG/M
Ga0154012_173746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	828	Open in IMG/M
Ga0154012_173984	Not Available	584	Open in IMG/M
Ga0154012_174305	Not Available	676	Open in IMG/M
Ga0154012_174425	Not Available	571	Open in IMG/M
Ga0154012_174473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	807	Open in IMG/M
Ga0154012_174773	Not Available	637	Open in IMG/M
Ga0154012_174978	Not Available	531	Open in IMG/M
Ga0154012_175490	Not Available	501	Open in IMG/M
Ga0154012_175788	Not Available	558	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0154012_101262	Ga0154012_1012621	F000203	LFPMPALGAKLAASFPTLFSTASGVFGLVAGPFSALRPLNLE*
Ga0154012_102103	Ga0154012_1021031	F050586	QMPTKIRTDKVAEQLTPIVNRVKDDDELRAHAKTALDSAKTIYSKVQSDGARKAATNKQVTDEVVKAATELRLTAERLTGKTKRKSHKLRKLLIGAVVAGAAAVGLKKILNRDEDEFEYEA*
Ga0154012_103575	Ga0154012_1035751	F053640	SKRSGLKDVAESTAGIIPGDRGKAGDNWCRPPLPTAKADERHISPVPLAGVVSGQSTHEIGTEPQGAIRNRAEWSQIHGEFRSVNRRSYPRGFWLLLRRPERSRGFRRDDPAKRPSSPHEPGAQRNRDGGERTDLGKVR*
Ga0154012_103969	Ga0154012_1039691	F015442	MSGQSFRASERPRREAGSVQVVRAGGLSSIDPLPSKGGSGESIGTRPGNLFATLGAVHAGGELGCESGHLE
Ga0154012_104984	Ga0154012_1049841	F051345	PRDAETAGGAPADTDAAEEARVQDWQAERLQQLGYGPEIASRVVRAAWLDGNHSDLVHRIEDLVQRGATLDQASRIVASVRTDIEEPAMQGGGSGASS*
Ga0154012_107406	Ga0154012_1074061	F010923	LERAAGSERKSGGFVRRTGRQQTRLNALIPRDVKVPEGSGDRGRGQLNQGGEVQRAPGSEAAATGAIREAVVEPKGRTGTEAIWEEAK*
Ga0154012_109103	Ga0154012_1091031	F002020	MEHCEQKRRTFRLSAPRWLVSPPAGSMLPDSPLTASCSEPVARNGFSLARNSCRLSATSIPGSKLPACYFASSQIASVPVRPFGSTTASRIAPVAAASLPEARCTSTPWFSWPRPRSPLPSGTFTSLGIKAFNRVCCLPVRLTNPPDFLSLPAARSNESLGCGSSFQVRYVSAGLLFL
Ga0154012_110028	Ga0154012_1100281	F083053	ELDGKSGLTGDAGLMETGWTLDAQAEGERSKEIETASSVGQGRLDPLDAKIHPRRKPEDAKFEDSRGFIIDPTVDAYPGQPGGA*
Ga0154012_112406	Ga0154012_1124062	F079169	MASKPSAIRGARVVGERYIRMKRRENPEGRMPLMDHLRELR
Ga0154012_112457	Ga0154012_1124571	F005880	VTFRQLALRPACTARAWHSELARREPFAPRCRLWPTADQCAGACLLAIPIEARFSMRPFALQFRELASRPIPATASTFPAYTFETILRSDPARSAPRSRPRSAFCDLARRDQHAKPVAVPDPRTHDSSSNISSPPGSLDPSGSKPQPDVRTMKLTLAGRPIFLPSPRRGNNFTHHSALRIIGPDPLLPARLAVLR
Ga0154012_112888	Ga0154012_1128881	F029597	MTTEQRQSTGSGVARATFGTVLFIAWGVLSVLWVYDAIYELAHSHLTPAITAVVAILLMLVLAVMEGLEVVMIHDWSRLYPDRTARDLAAWLSARQMFVASICVAATILAARDVIHIPFTSYTIEGAN
Ga0154012_114549	Ga0154012_1145491	F067753	MKKHFSKTKGSKGNGRVARTTKVDRDEDPTVPPQLLDQLSTGFTLRFTTQGTWPGSYTVTYGNLLDAWFVAGTATTAYQLFDFVKVKKVTVRAMGVADGAHFGPSATVGIEFPGLVGGQFGSGKQRQSSAIGETVPAYVSLKPDPMSQAAQFQPSTSNAAFIVRAVDGLRAALYGVIIDVQVVYKNSGDINPAAVTTARAGLTPGLIYFGGIDGLATANTIAKSTFIPIA*
Ga0154012_116095	Ga0154012_1160952	F004459	MQLSTLLAAPLACCRLELESRRMVPPSNEALRLIIETDLDLVSDLNRFYGDATADGGLDKAERDRLLDLLGRHYIGRSWPRSGGMDVTRRFMGTLQRSMTAAGWKLDAFAIAA*
Ga0154012_117998	Ga0154012_1179981	F104201	MLVMGGLLAAVLVGVPQADMIEHVRVACAVETDAVCPEHAPDALESTWGQGAVFLRTFDTSTSNPGNTSSSEHQAAGGTVWGQTMHTAWQVQEDVDRIELGSCAGPIAALYMDPARVDLAWLKVRLWQIPSLQPQRCAMAPGVCLVNC*
Ga0154012_118858	Ga0154012_1188581	F002562	IDVPSAQVLADQASIISELQFVMDCCKRLLADLAKPEEERDPLMPLALWSSAVLAYGRCFSKGKRFTLSNDDVRNLPLHGAVMKFHQWILEERDKLAARAANPAEGAKVGAALSPPEQKDRRVEGIVIFASSREVVDDTGVRQLGGLASELAKQTAEKAQEQQDVVLKDAQQLNLDSLYQQEPIGTWPPGEPE
Ga0154012_119666	Ga0154012_1196662	F007821	MLSRLVTVAIIAVVLVIVIDSLPDIKRYFEIRDMLGTRRR*
Ga0154012_119947	Ga0154012_1199471	F007446	VPDWGGATSHPEEAIVTTPPDFGGHEIEEGLLEDLGGPHERHPVSHQDERETDFSDNELHAAGQTCPRCGTVILPGQDVRRRADHQWIHEDCPASP*
Ga0154012_121980	Ga0154012_1219801	F014985	RGSKEKAMSAVLLAVFNDYETADRIRMALVRDGFPTDRVELTAACEPGRAAYLPAAAPRGKFVQYFRSLFKTDADRQYAENLAERVECGAATVTVHPRGAVETTMAAKIIESGSPSEVAHRDLANQGWEYAAARAEQPWIRHVLLEKSDAHCIYCRLFDSTHHHQHI*
Ga0154012_124365	Ga0154012_1243651	F001233	LRWTEAAERLPQKVSRIIPGDWGKDESGWLTYPLINRAARSGSGGRIHQFLWRRSRAVSDAKKELCGQER*
Ga0154012_124492	Ga0154012_1244921	F068181	RETGRPDGRESRTDQVPAARHLTEEEKMTTPVQWPPCPQPESFPLLTGFITPSSDLPPPPGLSGGISLDVTDPSENNERIRVVETDTAWDLTVKWCICGPFAEYLTGCWCVQVYIDDIDGVGRTSGPLGSKRVDSSTAVVVPTTPPGDDDTSRRCFKWTFRFPAGRVTPGVYNLVVVITFST
Ga0154012_126420	Ga0154012_1264201	F003269	VKTRIRIRRRVLTWFVSRWRNHQFKQAEKPHSKFSARKTLDGPATRPKTPLAVENSV
Ga0154012_130836	Ga0154012_1308361	F003193	IDSTVENVARELAYRLGESLSGLVRATADGASSVDSSVLNQLGATNLTTFTTLSLNQIRNSVQSLAGRSVRPFDEASKAFCGVIHPFALGDVLADTSNNSPIDILKHTPVGQMKMEDLVSVDLTEMIELPGSGVHFFQTNQVTTTSNYKSVSGLTALRTYIFGRDGIYSIKLGA
Ga0154012_130854	Ga0154012_1308541	F007670	MLDPVMSTQREQQKARMAAAASRRATPDAGPAGRTAIRSKPVRITLD
Ga0154012_133197	Ga0154012_1331971	F055114	HDTAWRVTRDGTDVVKVAVRQEQGEVLVLAETSNTEKPYRFDTLQAADAFLSDLMTSLSYLGCDIASTT*
Ga0154012_134139	Ga0154012_1341391	F006338	VVLKNGTLGGPATRPVTSLAVKNSVGKLAAPEMRRQMLAREREPG
Ga0154012_138114	Ga0154012_1381142	F078550	VNPRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM*
Ga0154012_139223	Ga0154012_1392232	F031241	MSSWDAPTGNWGSRQEPDESGRPDEQDYQQGESTSGYGTMHGDEGRLRTGRRGLPGYEQAQNHDQGTAGYD
Ga0154012_141702	Ga0154012_1417021	F080455	SVASSSYKGVAFVGYGGTFNPTNLMNLVQKNLKSSRVVNAGPHGGKMVCGYNTSNNSVASECVWATKTTFGIVEYFRHGQPAKVTNASALALKVRAAVEARAQ*
Ga0154012_142179	Ga0154012_1421791	F089744	HSVKIGLNSITWRLYALLKAYGCRMISDSYCHGDTSIYQLITIIYPTGTVSGVELVG*
Ga0154012_142744	Ga0154012_1427441	F048472	VSPHGVRLSGAPGAPLCNGYSSANRALAGKLLWDGTVAVPEVFAAGCLVLFSAEEPSADEHGQSGGSARSGDAGERHSRPGAPRPISLTCGYMATHGGTQGVAGIV
Ga0154012_143011	Ga0154012_1430111	F021791	VRFCADYRIKPHVPPFEQIPANSVKFQPCDCTAQAEYLSR*
Ga0154012_143208	Ga0154012_1432081	F018214	MCPLLLIAEHEYPTVVSMGLRSRGECVRPLCHGYPFVIQQLTEVRPGCQDPGMAIYQIVLTGYIHGGK
Ga0154012_146927	Ga0154012_1469272	F021561	MDVDSSQQRMAAYMRDHQDKVVGRWSEIVVAGLRGRSSVAEVRRELEDLYSLVVRAMSGADEQVAGELTA
Ga0154012_147106	Ga0154012_1471061	F032410	GSLYQNRIVNLRQASNTRTNEDFIIRQVSDIGHLCGTGGVNSLDPTSYACLNYQDYFPVFQGQFAPNSNETGFCVGAISATEGFKVRLERCGTPRTFWVGDIAASVQVTIVFNNAPFLLFYFPLEFSADTSASNPLVMTLNPNSKNPSNLLTLQQENFSGGLVPDRQMFTLTYPVRNIVVN*
Ga0154012_147398	Ga0154012_1473981	F105659	MTRTTIAGALAINVPSIYWATVLPTAALVVSIVTLAGIGALLGAFTGYAVITGDEPEARVRPDIEERLAA*
Ga0154012_147600	Ga0154012_1476002	F049584	MHQIGVVALSYRHSGIDEVARLSIPKADLESRLASLREALQVS
Ga0154012_148345	Ga0154012_1483451	F039900	MEQFLSEKDEEVRNYVLSDYRTETERDSEADIPVPDRLLPRRKSLELVRALKLSQMIGLLLWLNRANLITLGGRERLLYLQAKASFEAIEAGLRFARRLTQEEKLRSDFRHQMRELNRRPQSKHFRQSEARRIGVGYRDKGMLPGSSSGARTSAQRDAYVPSHLLPRLLKDALQLVAPACLTADEEWVDLSMVAGSFGTQADIGLRPLLPPL*
Ga0154012_148797	Ga0154012_1487971	F004678	LGREKAMRRFLSAAALFGVFSMAALAETYSGKLLDASCYDQQKKATACDATSTTTSFALDASGMVYKLDSAGNSKASAALKNRADRVDPSKPQSKEAMAKIEGTEKGGTITVTSIEIQ*
Ga0154012_151148	Ga0154012_1511482	F010412	MTKAKMLMSLTAAALSLGFSVQPHPAPFWETNIVIAAEDTSPKENVQTDEDNSATKSAKMGKDEGTHSGGDNQGTPPEADTQKIDQPPRQNPTTGQ*
Ga0154012_152726	Ga0154012_1527262	F029165	LGSYFDGSQPGPFGGDPRASGRGQGASGGTPSGFLGLQTSSFTDFLASHSPGLLPGRVMPAAPADP
Ga0154012_153762	Ga0154012_1537621	F037503	VDRLWEVELPIGLGGVKSYQILTNSECPQVEAGVRAGVLRSRSERGRTQTDS*
Ga0154012_155090	Ga0154012_1550902	F031585	PGAILLGMHDISTADGLDPGSLEAALTPVDPSSLMQTLVPTAVAPTGDLGKA*
Ga0154012_155837	Ga0154012_1558371	F003383	QSGLRFRVAPYSAPFLLSRRPNPQVAPWFRLFGCAGDGRSSYPELRMPSAVLVSAGFRVSPVAPTSSCSAPDVGIGFPLLLHLRLYRRWIIESPRFSHLSAVPTCRFSSCPEPQPFGIADDSSPELPRASNPPAPIDGYPSYLGSRTIRFSLVRSPSCPGHLPLGYSNRPISRLP*
Ga0154012_156901	Ga0154012_1569011	F043723	LISNADLESVLSGTFDLSRIEPNKHRNVFIMAAHCCLNGPVGTNKPTTFPLIQETISISGYIGARVSNNSWKSFCRHIAETLVQKFPGVVARSQQQTVMGGLWPIMPSISEKRVVA*
Ga0154012_159992	Ga0154012_1599921	F035772	MLLARCKTADQLYRLLFRFPLPFGIFESLRIKAFHRTRNRSARLPNPPDHLSLPAASSISRFGYGSSFLVRYVSGGLLFL
Ga0154012_160654	Ga0154012_1606541	F043786	PLVRLDAPVAPILDLSVAANPRAALAALRGIIVFRRFPAMGRTVRAADSNPG*
Ga0154012_160869	Ga0154012_1608691	F103562	AHQDYPTTEIYEGPLASTSRAYEVDGIPLEQHVTVYHSGRSDEVAPKEEPAPKEPSTDAFARLAGLFRKGTAHQDYPTSEVFEGPLATTSRAYDVEGIPLEQHVSVYHSGRSDEVLPKEAEVKHVEPEKEPGESLVDRLTGLFKRGAAHQDYPTSEVYEGPLASTSRAYEVDGVPLEQHVTAYHSGRSDEVLPKEEPVAKEPSKDAFERLAGLFKKGTAHQDYPVSDVYEGELASTSRAYDVEGIPLEQHVSVYHSGRSDEVL
Ga0154012_161931	Ga0154012_1619312	F079092	AATLALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH*
Ga0154012_162956	Ga0154012_1629561	F015442	VIGQSLRASERPLRASGSGQEVRADGLGSVNPLPSKGGCGESTRICPGNLSAMLSAEYAGGGQSCESDHLE
Ga0154012_165426	Ga0154012_1654261	F061831	GPFCTYPWYALNSKAFTYGADYPGTKFDYGQGFQFATTPLCGGPFGPDSTFCDTTLTPVP
Ga0154012_165795	Ga0154012_1657951	F051345	ETAGATEADAAEEARVQDWQEERLGQLGYGPEIASRVVRAAWLDGNHSDLVHRIEDLVQRGATLDQAARIVASVRTDFDEPVAQGGGRNAAS*
Ga0154012_167216	Ga0154012_1672161	F041412	MVRVTGSAELARPRPGQPAREAALLLITAAGAWAATVALARGMT
Ga0154012_167428	Ga0154012_1674281	F021791	TLVRFCADYRIKPHVPPFKQIPANSVKFRPCDYTAQAEYLRVS*
Ga0154012_170358	Ga0154012_1703581	F035772	MLLARCKTADQLHRLLFQLPLPFGTLTSLQIKAFRQIRNRSARLPNPPDSLSLPAAGSISRVGYGSSFLVRYVSGGLLFL
Ga0154012_170402	Ga0154012_1704022	F001862	LFWTVPLQSGREDDGHGGVRVDLDDGKARMRAKNLRVRDFFNIPNALFRFQSPASVRATVSFDIRWLGPATGRSAVTSPPGSSGRLLMSPATMRWSAQNAQGFSFKSNPS
Ga0154012_171109	Ga0154012_1711091	F005458	GHDEPELNPVSSASRSAQNITWRVQLPADGTFPVSGVGPTFWFGGTVKDSNPHKIGQEGFLELQFYPDSVTKNCGSNGSFSLVHAPDVYTACSPVWTLAKQGQQIAEPAAFNGMLTDAGGKAPFVMHALDIVDVHIWAPGPSSPYQEQVTDETSGQTSSVLVLISPKDGPLTPEYSTQEIGNALDWGGVWDTPMAFV
Ga0154012_171603	Ga0154012_1716031	F008406	MGMLRESESLDTLSKGFDDFIAGLKGSLRFRAAMAWFSWNIGKIRPLGLTTWDLGFRGPLAYRATKKFGLRLGPSLQSIPSLKVENGLSLDCEYVDPDLLDQDEKKENLAELAAWKWRTAFQVSSRPRRYFIFYLAVSATRRDEPDFKPYLYGGESGVLSRNVGGAKIFRQRVQRKDRGFPLLIPMRGKLPSYEEFLAGEVDVGSVELHAKDKK*
Ga0154012_171786	Ga0154012_1717861	F065371	GLYDATRGLTTAVAAGVAGLLLWLATLVGVQSVTRFWESMGIVAAAGLVVALSQVIGGWTKGGGLRVSPATFLLAFLPVLVCVGWILMATQPGHGWHEGTITSWSHSIGIMGLVHALGLWHGVLAFGFGLMLGMTLDTVPAPVVEPVGAPATAVVRDDETMAADRRGPRWRRRPAAVDDADEPVTAERDAAYAEPNTVTVGPHSRPETDE*
Ga0154012_172025	Ga0154012_1720251	F012586	AQFQKDWKAKYGHDFHIMKDDVVFGNPNFTVARGEIGTDAQLAGKQLPAGEKVTSDDVKNAAKDNSGNTKLDQNLEKGRNVAIVTVAESHGLPQLKVPLIHELPDLWKIDVPDSVSGQKLYDNLLKHLTMANEQKDQWPADENDAYRAVTHHVLMAVLDVDAHAGHGGASIGADSAKQAK
Ga0154012_172889	Ga0154012_1728891	F065371	AAGVAGLLLWLATLVGVQSVTRFWESMGIVAAAGLVVALSQVVGGWTKGGGLRLSPGTFLLAFLPVLVCVGWILMATQPGNGWHEGTITSWSHSIGIMGLVHALGLWHGVLAFGFGLVLGMTLDTVPAPVVEPAGAPATGVVRDDETMVADRRGRTWRRRPAAGDDADEPLTAERDAAYTAEPNTVTVGPRSTSDAGE*
Ga0154012_172917	Ga0154012_1729171	F010631	RLRSAAQKTDAKITEETMRKSLILVVTAIGGGVSYAAGVTELATGASTDDPSTWRWQVSSILAAQNDTATQRAETVADAFSQRYERYTPSGLPRPRSDSR*
Ga0154012_173714	Ga0154012_1737141	F082288	KTKNMMSFLFLSSILGIAIVSTNAILTAQTVNAQFVVKLGGPDTDQVSSRIIGTLLKPGFTNKYNLTVNGKTIPIDYSVLDGSLVGILSDPARKSLDLAVNPQANGAALEVNVPRHVIDSKNAAGKDAPFIVKVDGNRISGEPSGICVGTCPNILNSFKETHNTNTDRVLTVLV
Ga0154012_173746	Ga0154012_1737461	F000344	MRPRHPHAAESGVGKHTARESESAQACAAGKERVANAHPQKLAP
Ga0154012_173984	Ga0154012_1739842	F001975	MASTTSTQQELQDQFLSIVRKSQEMALDAIKSMVDTVQTITPRIPTVDVPFADQLPKPQDVVASGYDFAQKLLTSQRKFADEVVKAAAPLLPGNSSSK*
Ga0154012_174305	Ga0154012_1743051	F023966	MDQDNRVLTRRGARELSEQEVESVTGAFKARRTLTPCFVDSKQQFLNGDTAIGECGP
Ga0154012_174425	Ga0154012_1744251	F004214	MRRIRVILAAVAVPVTVAALVLTAQGAQASTPECLNGTYHGYCGTQIDNGTPALVLDNSKQREAVNNPVIGWTDSSTDPATDWFQLAFAGDNALGVMFFWAPTGVNLDLCMADPGNGHVVLRQCNGSDWQRWIATQVGTTSFFTWTNRATHRILQSGAKGAQLVTVTQSATTSGNQEWKF
Ga0154012_174473	Ga0154012_1744731	F000344	MRPKHPHAAESGVGKYIARESERAQACITGKERVANA
Ga0154012_174773	Ga0154012_1747731	F092500	IGGVILVVVGVIVVALSINSLTSLSISMPDDISTKSLIKSALNINQTAVKETVKTVGISLGLAFSGMLVAAILIVNGIIALIGGTVVSFADRRHKKVNKTQQHLGSPIG*
Ga0154012_174978	Ga0154012_1749782	F057406	MPKRRIIIGALIGAGSFAGTIFYRRRSARNRTRVDLYFDDGSMLSLATGAPDADRL
Ga0154012_175490	Ga0154012_1754901	F067704	MQVKTINSEQVWQSSDGQRTIWEVTLKADDGKEYRLKTYSAKIAQMGFDGEVRSYVNPRGERFVRQVPTNTKPSFGRDDSAIRAQWAIGQAINLASVKMDKEAITLPVIEKY
Ga0154012_175788	Ga0154012_1757882	F003699	MTTPNGPGFGDSAASDPLPEATTLVRGAAEAGQQLKILGGLGVRVLCPDFPPRLRAGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013059: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences