NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300012888

3300012888: Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - R



Overview

Basic Information
IMG/M Taxon OID3300012888 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127370 | Gp0191374 | Ga0160429
Sample NameSolar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - R
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size590103071
Sequencing Scaffolds25
Novel Protein Genes27
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus5
Not Available5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSolar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa
TypeEngineered
TaxonomyEngineered → Built Environment → Solar Panel → Unclassified → Unclassified → Solar Cell Surface → Solar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationUSA: Building 30, Lawrence Berkeley National Lab, Berkeley, California
CoordinatesLat. (o)37.876387Long. (o)-122.246777Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002654Metagenome / Metatranscriptome539Y
F021064Metagenome / Metatranscriptome220Y
F045048Metagenome / Metatranscriptome153Y
F059667Metagenome / Metatranscriptome133Y
F088701Metagenome / Metatranscriptome109N
F104247Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0160429_1000658All Organisms → cellular organisms → Bacteria25531Open in IMG/M
Ga0160429_1000972All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus17586Open in IMG/M
Ga0160429_1002243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus10304Open in IMG/M
Ga0160429_1002683All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus9314Open in IMG/M
Ga0160429_1005603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus6271Open in IMG/M
Ga0160429_1009787All Organisms → cellular organisms → Bacteria4611Open in IMG/M
Ga0160429_1013070All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus3888Open in IMG/M
Ga0160429_1015238All Organisms → cellular organisms → Bacteria3554Open in IMG/M
Ga0160429_1015384All Organisms → cellular organisms → Bacteria3534Open in IMG/M
Ga0160429_1022995Not Available2767Open in IMG/M
Ga0160429_1031585All Organisms → cellular organisms → Bacteria2265Open in IMG/M
Ga0160429_1049317All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya1711Open in IMG/M
Ga0160429_1067212All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae1400Open in IMG/M
Ga0160429_1071179All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales1348Open in IMG/M
Ga0160429_1075010Not Available1303Open in IMG/M
Ga0160429_1086825All Organisms → cellular organisms → Bacteria1185Open in IMG/M
Ga0160429_1106381All Organisms → cellular organisms → Bacteria1035Open in IMG/M
Ga0160429_1108192Not Available1023Open in IMG/M
Ga0160429_1150718All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata821Open in IMG/M
Ga0160429_1166750All Organisms → cellular organisms → Bacteria768Open in IMG/M
Ga0160429_1183593Not Available721Open in IMG/M
Ga0160429_1201941All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota677Open in IMG/M
Ga0160429_1245358Not Available598Open in IMG/M
Ga0160429_1277536All Organisms → cellular organisms → Bacteria553Open in IMG/M
Ga0160429_1292263All Organisms → cellular organisms → Bacteria536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0160429_1000658Ga0160429_100065817F104247MLAGMPDPSHPLRLYPTEAAAKRAGLQLADFSGERLPTTLYALLSEGEKKSIYLLSSAYRLTVAEQHWVAEHRATVTKLGRFHVGRGFSPLQLNMRREPRG*
Ga0160429_1000972Ga0160429_100097216F104247MSSTPFPLRLYPTEATAKKAGLLLADFRGERLSMVLYALLPEGEKKPTYLLSSSIRLTVAEKRWVEEHQATVTKLGSFHPGRNFAPLQTNMVRQRKSAQQE*
Ga0160429_1002243Ga0160429_10022434F104247VPLRLYPTEAAAKKAGLQLADFSGARLCTTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPAGGSFMPLQTNMLRMRKTKP*
Ga0160429_1002683Ga0160429_10026832F104247VTGTPSPLRLFPTEAAAKKAGLVLADFRGERLSVVLYALLPEGEKKSTYLLSSSIRLTVAERRWVEEHQATVTKLGTFYPGRNFAPLQINMLRQRKSTEQD*
Ga0160429_1005603Ga0160429_10056037F104247MSISPPLRRLYPTEIAANKAGLKLADFSGERLATTLYAFLPAGEKKLTYLLSSTYRLTVAEKRWVEEHQATVTKLGQFPAEGNYMPLQTNTLRKKKTE*
Ga0160429_1009787Ga0160429_10097874F104247MPSTPLPLRLYPTEAAARKAGLILADFRGKRLTVVLYALLPEDDKRPIYLLSSSVRLTVPEKRWVEEHRATVTKLGTFYPGRNFAPLQTNMVRGQKLAAQE*
Ga0160429_1013070Ga0160429_10130703F104247MFSTPPTLRLYPTEAAAKKAGLALADFRGERLTLVLYALLPEGEKPIYLLSSSIRLTVAEKRWVEEHRAAVTKLGTYYPGRNFAPLQTNMVRKQKSAEQG*
Ga0160429_1015238Ga0160429_10152384F104247MPSTSPPLRLYPTEAAARKAGLALADFRGERLSMVLYALLPEGEKKPTYLLSNSIRLTVAEKRWVEEHQATVTKLGTFHPGRNFAPLQMNMVRRQKPTEQK*
Ga0160429_1015384Ga0160429_10153841F104247VTSTPSPLRLFPTEAAAKKAGLALADFRGERLVMVLYALLPEGEKKFTYLLSSSIRLTTAEKRWVEEHRAAVTKLGTYHPGRNFAPLQTNMVRQKKPDGQG*
Ga0160429_1022995Ga0160429_10229953F059667MCIKAKAANTKGNTKCKAKNLFKVALLTEKPPQINSTISCPIQGIALIRLVITVAPHSDICP*
Ga0160429_1031585Ga0160429_10315852F104247VAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAEQRWAEEHQATVTKLGRFPVGGNYMPLQTNMLRKKTVE*
Ga0160429_1046411Ga0160429_10464113F021064TNTKNAILLKGLNCIPLKLDKSVKGITSKANIAENIAITPNNLLGIDLKIA*
Ga0160429_1049317Ga0160429_10493171F059667KCNEKNLFNVALFTEKPPQMNSTISCPTQGIALIKLVITVAPHKLICP*
Ga0160429_1067212Ga0160429_10672122F104247VAAKKAGVKLADFSGERLATTLYALLPVGEKKPTYLLSCTYRLTVAEKRWAEEHQATVTKLGRFPVGGNYMPLQTNMLRKKKTAE*
Ga0160429_1071179Ga0160429_10711793F088701VAVVLKRPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEYKIDLSRLSVIELDKSK
Ga0160429_1075010Ga0160429_10750103F045048MDSIPKGGHLAPSSTVGERALWKKDQKIAKKNSASDIINKATPMFIPLCTASV*
Ga0160429_1086825Ga0160429_10868253F104247MPVSPIPLRLYPTEAAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPAGSNYMPL
Ga0160429_1106381Ga0160429_11063811F104247MPVSPIPLRLYPTEAAARKAGLKLAEFSGERLATTLYALLPAGQKKPTYLLSSTYRLTVAEQRWAEEHQASVTKLGRFPVGGNYMPLQTNMLRKKKTAE*
Ga0160429_1108192Ga0160429_11081921F088701VAVVLKGPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEHNIDLSRLSVIELDKSKMIN
Ga0160429_1150718Ga0160429_11507181F002654DKVVCLKGNSPEQELKVPKLLLSEIKEVFFIYNQEIGLEAAIF*
Ga0160429_1166750Ga0160429_11667501F104247MPSTPLPLRLYPTEAAARKAGLALSDFRGERLTLVLYALLPADDKKPTYLLSSSIRLTVPEKRWVEEHRATVTKLGTFYPGRSFAPLQTNMVRGQKPAAQE*
Ga0160429_1183593Ga0160429_11835933F088701VVLKRPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEYKIDLSRLSVMELDKSKKINDVINT*
Ga0160429_1201941Ga0160429_12019412F059667MCIKAKAANTKGSTKCKAKNLFKVALLTEKPPHINSTISCPTQGIALIRLVITVAKS*
Ga0160429_1245358Ga0160429_12453582F059667MCIKAKAANTKGSTKCKAKNLFKVALLTEKPPHINSTISCPTQGIALIRLVITVAPHNDICPYGKT*
Ga0160429_1277536Ga0160429_12775361F104247MAKPPLPLRLYPTEVAAKKAGLQLADFSKARLSTLLYALLPAGEKKPIYLLSSTYRLTVAEKRWAEEHQATVTKLGRFLAGGSFMPLQINMLRTRNAKP*
Ga0160429_1292263Ga0160429_12922632F104247MPSTPPALRLFPTEVAAKKAGLALADFRGERLTIVLYALLPENEKKPIYLLSSSIRLTVAEQRWVEGHRATVTKLGTYSPGRNFA
Ga0160429_1312120Ga0160429_13121201F021064IKKLATKIKKAILLKGLNCKPLLLPRSVKGITNNINIAANIDITPNNLLGIDLKIA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.