NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011267

3300011267: Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer-51



Overview

Basic Information
IMG/M Taxon OID3300011267 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121499 | Gp0175552 | Ga0151621
Sample NameAcid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer-51
Sequencing StatusPermanent Draft
Sequencing CenterXcelris labs Ltd
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size280472042
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAcid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → acid mine drainage → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationMalanjkhand , India
CoordinatesLat. (o)22.023017Long. (o)80.732183Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F003800Metagenome / Metatranscriptome468Y
F009230Metagenome / Metatranscriptome321Y
F009579Metagenome / Metatranscriptome316Y
F011449Metagenome / Metatranscriptome291Y
F016087Metagenome / Metatranscriptome250Y
F025496Metagenome / Metatranscriptome201Y
F026036Metagenome / Metatranscriptome199Y
F030236Metagenome / Metatranscriptome186Y
F038611Metagenome / Metatranscriptome165Y
F050246Metagenome / Metatranscriptome145Y
F052268Metagenome143Y
F053654Metagenome141Y
F094256Metagenome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0151621_1065107All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense558Open in IMG/M
Ga0151621_1145890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium511Open in IMG/M
Ga0151621_1155335All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria623Open in IMG/M
Ga0151621_1156905All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium706Open in IMG/M
Ga0151621_1213650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium621Open in IMG/M
Ga0151621_1216045Not Available915Open in IMG/M
Ga0151621_1233635Not Available967Open in IMG/M
Ga0151621_1243667All Organisms → cellular organisms → Bacteria754Open in IMG/M
Ga0151621_1316727All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi727Open in IMG/M
Ga0151621_1323082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila1942Open in IMG/M
Ga0151621_1348594Not Available817Open in IMG/M
Ga0151621_1613715Not Available1745Open in IMG/M
Ga0151621_1660739All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia1349Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0151621_1065107Ga0151621_10651071F094256MGTLTSAEIRIERLRSEIAQLEARYDEVFPPGVYAVLEDLRRQLAALHQAS*
Ga0151621_1145890Ga0151621_11458902F025496MPSLRDHLDRTPEVRSRNLAAWMAPALGERATPMAPRFFEEAALTVLAHVFRDSGPIREALVFERRRFERLVQLIHRLPARGGGA*
Ga0151621_1155335Ga0151621_11553352F026036LALVVLPVTAQAGVSLTEMARLEASEEATIDGTRSLFRGYLSLGLLPEAASLLERRVRMGMFPLQEAIPFFENVVAEQGRFDDPRRLVAVCESAIRSGVRTSAVLYHYGTGLRGIGGRFGDASSALAQVGTESPYRFLAVFSLGQIAAEKGEIPSALD
Ga0151621_1156905Ga0151621_11569051F011449MREIRHTIVDIDAFLEEAARAQQRHEADRWRQELRPRAIRTFAVRAAKLTWSRALLKVVVEELYPDDLFTELVGNLDRVPSRQWPRVLAIA
Ga0151621_1213650Ga0151621_12136501F052268WIGFQYNSANETRKTYPGLPGRWSGRPYDFVAGGAGLKFPGLPAEVTGCLDGT*
Ga0151621_1216045Ga0151621_12160452F009230MKKGADSVIREYLASIGRKGGKARAAKYDKKTLSKWAKKGGRPRKEGAR*
Ga0151621_1233635Ga0151621_12336351F050246GPLAGVNEVMVGAAEVTVNVAPFAVPWGVVTWTGPVVAPAGTVAVI*
Ga0151621_1243667Ga0151621_12436671F000926XXXKSANALVGWLLQQAADRADANYQPKAGQTCKGRETLGVQGLFGGFQLERDYYYHPGKAQGHHPADAALGLEVGYTPALAKLICLEGADEPTYLKAERHLEQTGGMTVS
Ga0151621_1316727Ga0151621_13167272F053654VAETRRHVGMTTNAEDRAMTNFETLTAATIRLDEAERQVRIAAIRLNALVPGTPLRYGVESTRRLRAADAELEAARTAYEAAQDLPAPED*
Ga0151621_1323082Ga0151621_13230822F030236MTIFMVFVCFTSNEGQAPQCHPAYPKPYASADECEAFLQKDAYLKSYLKGVRDGKYQRNMSVEVLCMKKAVAASEPTH*
Ga0151621_1348594Ga0151621_13485941F009579SPMNGLELVVAFLAGVVMGIALDRWLLPPLVDAWIDRLRRHER*
Ga0151621_1348594Ga0151621_13485942F003800MSDERRDDAPERRRADVYSSARIGAAAALTLVLVVLLVLDVAVPDYDISPATLLPLLGAILALLGLEASSVWRGVR*
Ga0151621_1613715Ga0151621_16137153F016087MKGGAMERFWNIMGGLLDYFEYLGLVLLFAALAFSVGYHMGFSVGLDTKVTWVGDQYTMKLTGNGRR*
Ga0151621_1660739Ga0151621_16607394F038611MAWFRMMGVDSVEYHRATVLGRDDDHAGQAVLYYGSRGETPLRWGGALA
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